{"id":"https://openalex.org/W4297474865","doi":"https://doi.org/10.1093/nar/gkac832","title":"ProPan: a comprehensive database for profiling prokaryotic pan-genome dynamics","display_name":"ProPan: a comprehensive database for profiling prokaryotic pan-genome dynamics","publication_year":2022,"publication_date":"2022-09-28","ids":{"openalex":"https://openalex.org/W4297474865","doi":"https://doi.org/10.1093/nar/gkac832","pmid":"https://pubmed.ncbi.nlm.nih.gov/36169225"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac832","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac832","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkac832","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100330174","display_name":"Yadong Zhang","orcid":"https://orcid.org/0000-0003-0918-5673"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yadong Zhang","raw_affiliation_strings":["CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059770609","display_name":"Hao Zhang","orcid":"https://orcid.org/0000-0001-8873-9229"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Zhang","raw_affiliation_strings":["CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","University of Chinese Academy of Sciences , Beijing \u00a0100049, China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing \u00a0100049, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007855766","display_name":"Zaichao Zhang","orcid":"https://orcid.org/0000-0001-8985-8094"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]}],"countries":["CA","CN"],"is_corresponding":true,"raw_author_name":"Zaichao Zhang","raw_affiliation_strings":["CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","Department of Biology, The University of Western Ontario , London , Ontario \u00a0N6A 5B7, Canada","National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Department of Biology, The University of Western Ontario , London , Ontario \u00a0N6A 5B7, Canada","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zaichao Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Zaichao Zhang","raw_affiliation_strings":["CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","Department of Biology, The University of Western Ontario , London , Ontario \u00a0N6A 5B7, Canada","National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","University of Chinese Academy of Sciences , Beijing \u00a0100049, China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Department of Biology, The University of Western Ontario , London , Ontario \u00a0N6A 5B7, Canada","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing \u00a0100049, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056567029","display_name":"Qiheng Qian","orcid":"https://orcid.org/0000-0002-1930-7171"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiheng Qian","raw_affiliation_strings":["CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","University of Chinese Academy of Sciences , Beijing \u00a0100049, China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing \u00a0100049, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101549724","display_name":"Zhewen Zhang","orcid":"https://orcid.org/0000-0002-9422-822X"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CA","CN"],"is_corresponding":true,"raw_author_name":"Zhewen Zhang","raw_affiliation_strings":["CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","Department of Biology, The University of Western Ontario , London , Ontario \u00a0N6A 5B7, Canada","National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","University of Chinese Academy of Sciences , Beijing \u00a0100049, China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Department of Biology, The University of Western Ontario , London , Ontario \u00a0N6A 5B7, Canada","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing \u00a0100049, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101549724","display_name":"Zhewen Zhang","orcid":"https://orcid.org/0000-0002-9422-822X"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Zhewen Zhang","raw_affiliation_strings":["CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","Department of Biology, The University of Western Ontario , London , Ontario \u00a0N6A 5B7, Canada","National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Department of Biology, The University of Western Ontario , London , Ontario \u00a0N6A 5B7, Canada","institution_ids":["https://openalex.org/I125749732"]},{"raw_affiliation_string":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009289581","display_name":"Jingfa Xiao","orcid":"https://orcid.org/0000-0002-2835-4340"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jingfa Xiao","raw_affiliation_strings":["CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","University of Chinese Academy of Sciences , Beijing \u00a0100049, China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation , Beijing \u00a0100101, China","institution_ids":["https://openalex.org/I2801577699"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing \u00a0100049, China","institution_ids":["https://openalex.org/I4210165038"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5007855766","https://openalex.org/A5009289581","https://openalex.org/A5101549724"],"corresponding_institution_ids":["https://openalex.org/I125749732","https://openalex.org/I19820366","https://openalex.org/I2801577699","https://openalex.org/I4210165038"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.8228,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.85718479,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"51","issue":"D1","first_page":"D767","last_page":"D776"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8256462812423706},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7287694215774536},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.5979681015014648},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5672762989997864},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4154784381389618},{"id":"https://openalex.org/keywords/adaptation","display_name":"Adaptation (eye)","score":0.41136348247528076},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3942025601863861},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35461747646331787}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8256462812423706},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7287694215774536},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.5979681015014648},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5672762989997864},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4154784381389618},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.41136348247528076},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3942025601863861},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35461747646331787},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac832","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac832","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36169225","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36169225","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825599","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825599","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac832","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac832","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6499999761581421}],"awards":[{"id":"https://openalex.org/G7619073503","display_name":null,"funder_award_id":"32170669","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8354927234","display_name":null,"funder_award_id":"2021M693109","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":64,"referenced_works":["https://openalex.org/W1519815462","https://openalex.org/W1561012968","https://openalex.org/W1742186012","https://openalex.org/W1963459864","https://openalex.org/W1985716049","https://openalex.org/W2003979710","https://openalex.org/W2041267682","https://openalex.org/W2055615325","https://openalex.org/W2058863224","https://openalex.org/W2091328482","https://openalex.org/W2093610003","https://openalex.org/W2096093282","https://openalex.org/W2096525273","https://openalex.org/W2112701562","https://openalex.org/W2118001436","https://openalex.org/W2118688136","https://openalex.org/W2122673596","https://openalex.org/W2124166542","https://openalex.org/W2142678478","https://openalex.org/W2150550043","https://openalex.org/W2162455852","https://openalex.org/W2165335121","https://openalex.org/W2406250479","https://openalex.org/W2547528004","https://openalex.org/W2778716864","https://openalex.org/W2784532673","https://openalex.org/W2802123900","https://openalex.org/W2884973652","https://openalex.org/W2900629010","https://openalex.org/W2904076541","https://openalex.org/W2940320699","https://openalex.org/W2951254987","https://openalex.org/W2951755708","https://openalex.org/W2952366981","https://openalex.org/W2981519702","https://openalex.org/W2981913463","https://openalex.org/W2982249296","https://openalex.org/W2982531601","https://openalex.org/W2983351185","https://openalex.org/W2987650093","https://openalex.org/W2997125367","https://openalex.org/W3007303376","https://openalex.org/W3011227008","https://openalex.org/W3012647466","https://openalex.org/W3048398081","https://openalex.org/W3097021932","https://openalex.org/W3104062656","https://openalex.org/W3107527779","https://openalex.org/W3127288224","https://openalex.org/W3157464029","https://openalex.org/W3170689505","https://openalex.org/W3177974256","https://openalex.org/W3203343200","https://openalex.org/W3211014030","https://openalex.org/W4210616455","https://openalex.org/W4210654866","https://openalex.org/W4220951604","https://openalex.org/W4247001379","https://openalex.org/W4249954951","https://openalex.org/W4255836900","https://openalex.org/W6631042569","https://openalex.org/W6769556952","https://openalex.org/W6769835102","https://openalex.org/W6770028678"],"related_works":["https://openalex.org/W2414506155","https://openalex.org/W1565527690","https://openalex.org/W2752117239","https://openalex.org/W1493660383","https://openalex.org/W2759519215","https://openalex.org/W2170130581","https://openalex.org/W2353729507","https://openalex.org/W4318240630","https://openalex.org/W2560359598","https://openalex.org/W3023271652"],"abstract_inverted_index":{"Compared":[0],"with":[1],"conventional":[2],"comparative":[3],"genomics,":[4],"the":[5,89,93,98,110,115,128,132,178],"recent":[6],"studies":[7,179],"in":[8,106],"pan-genomics":[9],"have":[10],"provided":[11],"further":[12],"insights":[13],"into":[14],"species":[15,31,59,63,94],"genomic":[16],"dynamics,":[17,183],"taxonomy":[18,184],"and":[19,22,34,40,43,46,60,78,104,118,145,147,163,185],"identification,":[20],"pathogenicity":[21],"environmental":[23,133,190],"adaptation.":[24,191],"To":[25],"better":[26],"understand":[27],"genome":[28],"characteristics":[29,103,130],"of":[30,32,67,92,95,100,112,131,139,149,180],"interest":[33],"to":[35],"fully":[36],"excavate":[37],"key":[38],"metabolic":[39,151],"resistant":[41],"genes":[42,137],"their":[44],"conservations":[45],"variations,":[47],"here":[48],"we":[49],"present":[50],"ProPan":[51,83,155,170],"(https://ngdc.cncb.ac.cn/propan),":[52],"a":[53,65,157,174],"public":[54],"database":[55],"covering":[56],"23":[57],"archaeal":[58],"1,481":[61],"bacterial":[62],"(in":[64],"total":[66],"51,882":[68],"strains)":[69],"for":[70,88,121,177],"comprehensively":[71],"profiling":[72],"prokaryotic":[73,181],"pan-genome":[74,90,107,182],"dynamics.":[75],"By":[76],"analyzing":[77],"integrating":[79],"these":[80],"massive":[81],"datasets,":[82],"offers":[84],"three":[85],"major":[86],"aspects":[87],"dynamics":[91],"interest:":[96],"1)":[97],"evaluations":[99],"various":[101],"species'":[102,124],"composition":[105],"dynamics;":[108],"2)":[109],"visualization":[111],"map":[113],"association,":[114],"functional":[116],"annotation":[117],"presence/absence":[119],"variation":[120],"all":[122],"contained":[123],"gene":[125],"clusters;":[126],"3)":[127],"typical":[129],"adaptation,":[134],"including":[135],"resistance":[136],"prediction":[138],"126":[140],"substances":[141],"(biocide,":[142],"antimicrobial":[143],"drug":[144],"metal)":[146],"evaluation":[148],"31":[150],"cycle":[152],"processes.":[153],"Besides,":[154],"develops":[156],"very":[158],"user-friendly":[159],"interface,":[160],"flexible":[161],"retrieval":[162],"multi-level":[164],"real-time":[165],"statistical":[166],"visualization.":[167],"Taken":[168],"together,":[169],"will":[171],"serve":[172],"as":[173,187,189],"weighty":[175],"resource":[176],"identification":[186],"well":[188]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-12T07:58:50.170612","created_date":"2025-10-10T00:00:00"}
