{"id":"https://openalex.org/W4282946495","doi":"https://doi.org/10.1093/nar/gkac402","title":"GrAfSS: a webserver for substructure similarity searching and comparisons in the structures of proteins and RNA","display_name":"GrAfSS: a webserver for substructure similarity searching and comparisons in the structures of proteins and RNA","publication_year":2022,"publication_date":"2022-05-08","ids":{"openalex":"https://openalex.org/W4282946495","doi":"https://doi.org/10.1093/nar/gkac402","pmid":"https://pubmed.ncbi.nlm.nih.gov/35639505"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac402","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac402","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W375/44377687/gkac402.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/50/W1/W375/44377687/gkac402.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018419350","display_name":"Nur Syatila Ab Ghani","orcid":"https://orcid.org/0000-0003-0718-6904"},"institutions":[{"id":"https://openalex.org/I885383172","display_name":"National University of Malaysia","ror":"https://ror.org/00bw8d226","country_code":"MY","type":"education","lineage":["https://openalex.org/I885383172"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Nur Syatila\u00a0Ab Ghani","raw_affiliation_strings":["Institute of Systems Biology, Universiti Kebangsaan Malaysia , 43600 UKM Bangi , Selangor , Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Systems Biology, Universiti Kebangsaan Malaysia , 43600 UKM Bangi , Selangor , Malaysia","institution_ids":["https://openalex.org/I885383172"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065944558","display_name":"Reeki Emrizal","orcid":"https://orcid.org/0000-0001-5956-2428"},"institutions":[{"id":"https://openalex.org/I885383172","display_name":"National University of Malaysia","ror":"https://ror.org/00bw8d226","country_code":"MY","type":"education","lineage":["https://openalex.org/I885383172"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Reeki Emrizal","raw_affiliation_strings":["Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia , 43600 UKM Bangi , Selangor , Malaysia"],"raw_orcid":"https://orcid.org/0000-0001-5956-2428","affiliations":[{"raw_affiliation_string":"Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia , 43600 UKM Bangi , Selangor , Malaysia","institution_ids":["https://openalex.org/I885383172"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018724100","display_name":"Sabrina Mohamed Moffit","orcid":null},"institutions":[{"id":"https://openalex.org/I885383172","display_name":"National University of Malaysia","ror":"https://ror.org/00bw8d226","country_code":"MY","type":"education","lineage":["https://openalex.org/I885383172"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Sabrina Mohamed Moffit","raw_affiliation_strings":["Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia , 43600 UKM Bangi , Selangor , Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia , 43600 UKM Bangi , Selangor , Malaysia","institution_ids":["https://openalex.org/I885383172"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048356979","display_name":"Hazrina Yusof Hamdani","orcid":"https://orcid.org/0000-0003-3973-9921"},"institutions":[{"id":"https://openalex.org/I139322472","display_name":"Universiti Sains Malaysia","ror":"https://ror.org/02rgb2k63","country_code":"MY","type":"education","lineage":["https://openalex.org/I139322472"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Hazrina\u00a0Yusof Hamdani","raw_affiliation_strings":["Advanced Medical and Dental Institute, Universiti Sains Malaysia , Bertam, Kepala Batas 13200 , Pulau Pinang , Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Advanced Medical and Dental Institute, Universiti Sains Malaysia , Bertam, Kepala Batas 13200 , Pulau Pinang , Malaysia","institution_ids":["https://openalex.org/I139322472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014901980","display_name":"Effirul Ikhwan Ramlan","orcid":"https://orcid.org/0000-0002-8150-4782"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Effirul\u00a0Ikhwan Ramlan","raw_affiliation_strings":["School of Medicine, University College Dublin, Belfield , Dublin 4 , Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine, University College Dublin, Belfield , Dublin 4 , Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070763648","display_name":"Mohd Firdaus\u2010Raih","orcid":"https://orcid.org/0000-0003-4275-4663"},"institutions":[{"id":"https://openalex.org/I885383172","display_name":"National University of Malaysia","ror":"https://ror.org/00bw8d226","country_code":"MY","type":"education","lineage":["https://openalex.org/I885383172"]}],"countries":["MY"],"is_corresponding":true,"raw_author_name":"Mohd Firdaus-Raih","raw_affiliation_strings":["Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia , 43600 UKM Bangi , Selangor , Malaysia","Institute of Systems Biology, Universiti Kebangsaan Malaysia , 43600 UKM Bangi , Selangor , Malaysia"],"raw_orcid":"https://orcid.org/0000-0003-4275-4663","affiliations":[{"raw_affiliation_string":"Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia , 43600 UKM Bangi , Selangor , Malaysia","institution_ids":["https://openalex.org/I885383172"]},{"raw_affiliation_string":"Institute of Systems Biology, Universiti Kebangsaan Malaysia , 43600 UKM Bangi , Selangor , Malaysia","institution_ids":["https://openalex.org/I885383172"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5070763648"],"corresponding_institution_ids":["https://openalex.org/I885383172"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.8662,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.70889693,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"50","issue":"W1","first_page":"W375","last_page":"W383"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.7520667910575867},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7045928239822388},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6809892654418945},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.6712325811386108},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.568061113357544},{"id":"https://openalex.org/keywords/substructure","display_name":"Substructure","score":0.5579471588134766},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5552680492401123},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.45859211683273315},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4485732316970825},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.44359761476516724},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42395707964897156},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.31794658303260803},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.23202744126319885},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20299193263053894},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.14563387632369995},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.10774266719818115},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08256733417510986},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08212348818778992}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.7520667910575867},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7045928239822388},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6809892654418945},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.6712325811386108},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.568061113357544},{"id":"https://openalex.org/C99679407","wikidata":"https://www.wikidata.org/wiki/Q56761637","display_name":"Substructure","level":2,"score":0.5579471588134766},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5552680492401123},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.45859211683273315},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4485732316970825},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.44359761476516724},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42395707964897156},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.31794658303260803},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.23202744126319885},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20299193263053894},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.14563387632369995},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10774266719818115},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08256733417510986},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08212348818778992},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac402","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac402","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W375/44377687/gkac402.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:35639505","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35639505","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9252811","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9252811","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac402","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac402","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W375/44377687/gkac402.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6100000143051147}],"awards":[{"id":"https://openalex.org/G6697211027","display_name":null,"funder_award_id":"DIP-2019-016","funder_id":"https://openalex.org/F4320322699","funder_display_name":"Universiti Kebangsaan Malaysia"},{"id":"https://openalex.org/G8373852327","display_name":null,"funder_award_id":"FRGS/1/2020/ICT01/UKM/02/1","funder_id":"https://openalex.org/F4320322699","funder_display_name":"Universiti Kebangsaan Malaysia"}],"funders":[{"id":"https://openalex.org/F4320321709","display_name":"Ministry of Higher Education, Malaysia","ror":"https://ror.org/05mcs2t73"},{"id":"https://openalex.org/F4320322699","display_name":"Universiti Kebangsaan Malaysia","ror":"https://ror.org/00bw8d226"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1863324516","https://openalex.org/W1945716215","https://openalex.org/W1967686998","https://openalex.org/W1970981633","https://openalex.org/W1985118227","https://openalex.org/W1986046522","https://openalex.org/W1987819535","https://openalex.org/W2020657839","https://openalex.org/W2024993723","https://openalex.org/W2031771080","https://openalex.org/W2040447892","https://openalex.org/W2069152576","https://openalex.org/W2072287929","https://openalex.org/W2091861424","https://openalex.org/W2096863497","https://openalex.org/W2100494857","https://openalex.org/W2100630309","https://openalex.org/W2104420868","https://openalex.org/W2106746359","https://openalex.org/W2108302275","https://openalex.org/W2116007667","https://openalex.org/W2126359798","https://openalex.org/W2130479394","https://openalex.org/W2131575287","https://openalex.org/W2134425918","https://openalex.org/W2138770756","https://openalex.org/W2147135057","https://openalex.org/W2152379980","https://openalex.org/W2156566102","https://openalex.org/W2158073100","https://openalex.org/W2172206224","https://openalex.org/W2177307286","https://openalex.org/W2335469959","https://openalex.org/W2342569995","https://openalex.org/W2643342612","https://openalex.org/W2765459505","https://openalex.org/W2767891136","https://openalex.org/W2945199349","https://openalex.org/W2980170459","https://openalex.org/W3030107113","https://openalex.org/W3093720589","https://openalex.org/W3104537585","https://openalex.org/W3133541601","https://openalex.org/W3136391795","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W3188598472","https://openalex.org/W3211795435","https://openalex.org/W4252672146","https://openalex.org/W6778582829","https://openalex.org/W6792051437"],"related_works":["https://openalex.org/W2020669016","https://openalex.org/W2088162897","https://openalex.org/W2090630809","https://openalex.org/W4387804157","https://openalex.org/W2106612397","https://openalex.org/W2518314460","https://openalex.org/W2401430279","https://openalex.org/W2013211627","https://openalex.org/W2069319199","https://openalex.org/W2032140021"],"abstract_inverted_index":{"The":[0,33,100,170,180],"GrAfSS":[1,181],"(Graph":[2],"theoretical":[3,42],"Applications":[4],"for":[5,14,130],"Substructure":[6],"Searching)":[7],"webserver":[8,34,101],"is":[9,183],"a":[10,53,65,73,82,108],"platform":[11],"to":[12,62,105,121],"search":[13],"three-dimensional":[15,66],"substructures":[16],"of:":[17],"(i)":[18],"amino":[19],"acid":[20],"side":[21],"chains":[22],"in":[23,30,81,90,94,167],"protein":[24,83,109],"structures;":[25],"and":[26,49,152],"(ii)":[27],"base":[28],"arrangements":[29,117],"RNA":[31,85,111],"structures.":[32],"interfaces":[35],"the":[36,95,131,147,158,168],"functions":[37],"of":[38,69,113,134,162,165],"five":[39],"different":[40],"graph":[41],"algorithms":[43],"-":[44,51],"ASSAM,":[45],"SPRITE,":[46],"IMAAAGINE,":[47],"NASSAM":[48],"COGNAC":[50],"into":[52,157],"single":[54],"substructure":[55],"searching":[56],"suite.":[57],"Users":[58],"will":[59],"be":[60,88],"able":[61],"identify":[63],"whether":[64,107],"(3D)":[67],"arrangement":[68],"interest,":[70],"such":[71],"as":[72,146],"ligand":[74],"binding":[75],"site":[76],"or":[77,84,110,124,142,160],"3D":[78,125],"motif,":[79],"observed":[80],"structure":[86,112],"can":[87,153],"found":[89],"other":[91],"structures":[92,136,166],"available":[93,184],"Protein":[96],"Data":[97],"Bank":[98],"(PDB).":[99],"also":[102],"allows":[103],"users":[104],"determine":[106],"interest":[114],"contains":[115],"substructural":[116,172],"that":[118,137],"are":[119,174],"similar":[120],"known":[122],"motifs":[123],"arrangements.":[126],"These":[127],"capabilities":[128],"allow":[129],"functional":[132,163],"annotation":[133],"new":[135],"were":[138],"either":[139],"experimentally":[140],"determined":[141],"computationally":[143],"generated":[144,149],"(such":[145],"coordinates":[148],"by":[150],"AlphaFold2)":[151],"provide":[154],"further":[155],"insights":[156],"diversity":[159],"conservation":[161],"mechanisms":[164],"PDB.":[169],"computed":[171],"superpositions":[173],"visualized":[175],"using":[176],"integrated":[177],"NGL":[178],"viewers.":[179],"server":[182],"at":[185],"http://mfrlab.org/grafss/.":[186]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
