{"id":"https://openalex.org/W4282913389","doi":"https://doi.org/10.1093/nar/gkac400","title":"PADLOC: a web server for the identification of antiviral defence systems in microbial genomes","display_name":"PADLOC: a web server for the identification of antiviral defence systems in microbial genomes","publication_year":2022,"publication_date":"2022-05-06","ids":{"openalex":"https://openalex.org/W4282913389","doi":"https://doi.org/10.1093/nar/gkac400","pmid":"https://pubmed.ncbi.nlm.nih.gov/35639517"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac400","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac400","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W541/44379526/gkac400.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/50/W1/W541/44379526/gkac400.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033566742","display_name":"Leighton Payne","orcid":"https://orcid.org/0000-0003-2305-6827"},"institutions":[{"id":"https://openalex.org/I80281795","display_name":"University of Otago","ror":"https://ror.org/01jmxt844","country_code":"NZ","type":"education","lineage":["https://openalex.org/I80281795"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Leighton J Payne","raw_affiliation_strings":["Department of Microbiology and Immunology, University of Otago , Dunedin , New Zealand"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, University of Otago , Dunedin , New Zealand","institution_ids":["https://openalex.org/I80281795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046895357","display_name":"Sean Meaden","orcid":"https://orcid.org/0000-0002-9748-6937"},"institutions":[{"id":"https://openalex.org/I23923803","display_name":"University of Exeter","ror":"https://ror.org/03yghzc09","country_code":"GB","type":"education","lineage":["https://openalex.org/I23923803"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sean Meaden","raw_affiliation_strings":["Biosciences, University of Exeter , Penryn , UK"],"affiliations":[{"raw_affiliation_string":"Biosciences, University of Exeter , Penryn , UK","institution_ids":["https://openalex.org/I23923803"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027858275","display_name":"Mario Rodr\u00edguez Mestre","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mario R Mestre","raw_affiliation_strings":["Independent Researcher , Spain"],"affiliations":[{"raw_affiliation_string":"Independent Researcher , Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102450117","display_name":"Chris Palmer","orcid":null},"institutions":[{"id":"https://openalex.org/I80281795","display_name":"University of Otago","ror":"https://ror.org/01jmxt844","country_code":"NZ","type":"education","lineage":["https://openalex.org/I80281795"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Chris Palmer","raw_affiliation_strings":["Information Technology Services Research and Teaching Group, University of Otago , Dunedin , New Zealand"],"affiliations":[{"raw_affiliation_string":"Information Technology Services Research and Teaching Group, University of Otago , Dunedin , New Zealand","institution_ids":["https://openalex.org/I80281795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027025610","display_name":"Nicol\u00e1s Toro","orcid":"https://orcid.org/0000-0002-3614-807X"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210092123","display_name":"Estaci\u00f3n Experimental del Zaid\u00edn","ror":"https://ror.org/00drcz023","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210092123"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Nicol\u00e1s Toro","raw_affiliation_strings":["Department of Soil Microbiology and Symbiotic Systems, Estaci\u00f3n Experimental del Zaid\u00edn, Consejo Superior de Investigaciones Cient\u00edficas, Structure, Dynamics and Function of Rhizobacterial Genomes, Grupo de Ecolog\u00eda Gen\u00e9tica de la Rizosfera , Granada , Spain"],"affiliations":[{"raw_affiliation_string":"Department of Soil Microbiology and Symbiotic Systems, Estaci\u00f3n Experimental del Zaid\u00edn, Consejo Superior de Investigaciones Cient\u00edficas, Structure, Dynamics and Function of Rhizobacterial Genomes, Grupo de Ecolog\u00eda Gen\u00e9tica de la Rizosfera , Granada , Spain","institution_ids":["https://openalex.org/I4210092123","https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035086259","display_name":"Peter C. Fineran","orcid":"https://orcid.org/0000-0002-4639-6704"},"institutions":[{"id":"https://openalex.org/I4210129442","display_name":"Maurice Wilkins Centre","ror":"https://ror.org/0327mmx61","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I154130895","https://openalex.org/I4210129442"]},{"id":"https://openalex.org/I80281795","display_name":"University of Otago","ror":"https://ror.org/01jmxt844","country_code":"NZ","type":"education","lineage":["https://openalex.org/I80281795"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Peter\u00a0C Fineran","raw_affiliation_strings":["Bioprotection Aotearoa, University of Otago , Dunedin , New Zealand","Department of Microbiology and Immunology, University of Otago , Dunedin , New Zealand","Genetics Otago, University of Otago , Dunedin , New Zealand","Maurice Wilkins Centre for Molecular Biodiscovery, University of Otago , Dunedin , New Zealand"],"affiliations":[{"raw_affiliation_string":"Bioprotection Aotearoa, University of Otago , Dunedin , New Zealand","institution_ids":["https://openalex.org/I80281795"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, University of Otago , Dunedin , New Zealand","institution_ids":["https://openalex.org/I80281795"]},{"raw_affiliation_string":"Genetics Otago, University of Otago , Dunedin , New Zealand","institution_ids":["https://openalex.org/I80281795"]},{"raw_affiliation_string":"Maurice Wilkins Centre for Molecular Biodiscovery, University of Otago , Dunedin , New Zealand","institution_ids":["https://openalex.org/I4210129442","https://openalex.org/I80281795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074401431","display_name":"Simon A. Jackson","orcid":"https://orcid.org/0000-0002-4512-3093"},"institutions":[{"id":"https://openalex.org/I4210129442","display_name":"Maurice Wilkins Centre","ror":"https://ror.org/0327mmx61","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I154130895","https://openalex.org/I4210129442"]},{"id":"https://openalex.org/I80281795","display_name":"University of Otago","ror":"https://ror.org/01jmxt844","country_code":"NZ","type":"education","lineage":["https://openalex.org/I80281795"]}],"countries":["NZ"],"is_corresponding":true,"raw_author_name":"Simon\u00a0A Jackson","raw_affiliation_strings":["Bioprotection Aotearoa, University of Otago , Dunedin , New Zealand","Department of Microbiology and Immunology, University of Otago , Dunedin , New Zealand","Genetics Otago, University of Otago , Dunedin , New Zealand","Maurice Wilkins Centre for Molecular Biodiscovery, University of Otago , Dunedin , New Zealand"],"affiliations":[{"raw_affiliation_string":"Bioprotection Aotearoa, University of Otago , Dunedin , New Zealand","institution_ids":["https://openalex.org/I80281795"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, University of Otago , Dunedin , New Zealand","institution_ids":["https://openalex.org/I80281795"]},{"raw_affiliation_string":"Genetics Otago, University of Otago , Dunedin , New Zealand","institution_ids":["https://openalex.org/I80281795"]},{"raw_affiliation_string":"Maurice Wilkins Centre for Molecular Biodiscovery, University of Otago , Dunedin , New Zealand","institution_ids":["https://openalex.org/I4210129442","https://openalex.org/I80281795"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5074401431"],"corresponding_institution_ids":["https://openalex.org/I4210129442","https://openalex.org/I80281795"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":36.6686,"has_fulltext":true,"cited_by_count":221,"citation_normalized_percentile":{"value":0.99907494,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"50","issue":"W1","first_page":"W541","last_page":"W550"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8537948727607727},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6530672311782837},{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.6466940641403198},{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.5812063217163086},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5545656085014343},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.459955096244812},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.450831800699234},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.425518274307251},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2744590640068054},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.25844788551330566},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2295328676700592},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19780287146568298},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.17094990611076355},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.08965006470680237}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8537948727607727},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6530672311782837},{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.6466940641403198},{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.5812063217163086},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5545656085014343},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.459955096244812},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.450831800699234},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.425518274307251},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2744590640068054},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.25844788551330566},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2295328676700592},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19780287146568298},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.17094990611076355},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08965006470680237}],"mesh":[{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkac400","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac400","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W541/44379526/gkac400.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:35639517","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35639517","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/279404","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/279404","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:pubmedcentral.nih.gov:9252829","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9252829","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac400","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac400","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W541/44379526/gkac400.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1013137589","display_name":null,"funder_award_id":"Marsden","funder_id":"https://openalex.org/F4320320774","funder_display_name":"Royal Society Te Ap\u0101rangi"},{"id":"https://openalex.org/G1269267818","display_name":null,"funder_award_id":"MCIN/ AEI /10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G300979063","display_name":null,"funder_award_id":"10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3429648993","display_name":null,"funder_award_id":"PID202","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4126322094","display_name":null,"funder_award_id":"01100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G5080475149","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G661330594","display_name":null,"funder_award_id":"00110","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G6685425346","display_name":null,"funder_award_id":"0011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G6717538712","display_name":null,"funder_award_id":"AEI /10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7266728691","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8260616629","display_name":null,"funder_award_id":"011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8638682022","display_name":null,"funder_award_id":"10.13039/50110001103","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320310144","display_name":"Tertiary Education Commission","ror":"https://ror.org/05xhe5a74"},{"id":"https://openalex.org/F4320310371","display_name":"University of Otago","ror":"https://ror.org/01jmxt844"},{"id":"https://openalex.org/F4320320006","display_name":"Royal Society","ror":"https://ror.org/03wnrjx87"},{"id":"https://openalex.org/F4320320774","display_name":"Royal Society Te Ap\u0101rangi","ror":"https://ror.org/04tajb587"},{"id":"https://openalex.org/F4320335369","display_name":"Marsden Fund","ror":null},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4282913389.pdf","grobid_xml":"https://content.openalex.org/works/W4282913389.grobid-xml"},"referenced_works_count":100,"referenced_works":["https://openalex.org/W104710838","https://openalex.org/W1604725832","https://openalex.org/W1712356349","https://openalex.org/W1850128748","https://openalex.org/W1870179359","https://openalex.org/W1889445889","https://openalex.org/W1891398426","https://openalex.org/W1917543365","https://openalex.org/W1967870123","https://openalex.org/W1973468599","https://openalex.org/W1982815906","https://openalex.org/W1989477034","https://openalex.org/W1993876481","https://openalex.org/W1995438737","https://openalex.org/W1997817740","https://openalex.org/W1999098884","https://openalex.org/W2000541324","https://openalex.org/W2016671426","https://openalex.org/W2053924001","https://openalex.org/W2054198516","https://openalex.org/W2056590801","https://openalex.org/W2061710180","https://openalex.org/W2084604323","https://openalex.org/W2098085279","https://openalex.org/W2107094711","https://openalex.org/W2114850508","https://openalex.org/W2123839393","https://openalex.org/W2124401047","https://openalex.org/W2130063710","https://openalex.org/W2130479394","https://openalex.org/W2132926880","https://openalex.org/W2133620956","https://openalex.org/W2134084672","https://openalex.org/W2137520436","https://openalex.org/W2137561105","https://openalex.org/W2138122982","https://openalex.org/W2141152740","https://openalex.org/W2142845976","https://openalex.org/W2143485490","https://openalex.org/W2144418065","https://openalex.org/W2146276053","https://openalex.org/W2158742098","https://openalex.org/W2163346927","https://openalex.org/W2171241793","https://openalex.org/W2171631201","https://openalex.org/W2290514713","https://openalex.org/W2299009003","https://openalex.org/W2399809721","https://openalex.org/W2465903376","https://openalex.org/W2470052926","https://openalex.org/W2755432955","https://openalex.org/W2766648240","https://openalex.org/W2766750388","https://openalex.org/W2774178591","https://openalex.org/W2784532673","https://openalex.org/W2789357097","https://openalex.org/W2803102575","https://openalex.org/W2803245377","https://openalex.org/W2809341917","https://openalex.org/W2889273586","https://openalex.org/W2898402099","https://openalex.org/W2940408580","https://openalex.org/W2980170804","https://openalex.org/W2984113873","https://openalex.org/W2995081665","https://openalex.org/W2999639869","https://openalex.org/W3013683123","https://openalex.org/W3019706413","https://openalex.org/W3081228941","https://openalex.org/W3081477909","https://openalex.org/W3084056065","https://openalex.org/W3087038497","https://openalex.org/W3096234081","https://openalex.org/W3106948039","https://openalex.org/W3108496856","https://openalex.org/W3138850736","https://openalex.org/W3158286806","https://openalex.org/W3159245254","https://openalex.org/W3159419779","https://openalex.org/W3177828909","https://openalex.org/W3196746181","https://openalex.org/W3202572231","https://openalex.org/W3204025149","https://openalex.org/W3206452667","https://openalex.org/W4200112230","https://openalex.org/W4210795196","https://openalex.org/W4210840673","https://openalex.org/W4210903075","https://openalex.org/W4211221812","https://openalex.org/W4213108592","https://openalex.org/W4213300886","https://openalex.org/W4220838810","https://openalex.org/W4220997118","https://openalex.org/W4229443239","https://openalex.org/W4232564936","https://openalex.org/W4247447075","https://openalex.org/W4280510777","https://openalex.org/W4281790889","https://openalex.org/W4375858802","https://openalex.org/W6809593472"],"related_works":["https://openalex.org/W2173732482","https://openalex.org/W2167922509","https://openalex.org/W4388652965","https://openalex.org/W2107903949","https://openalex.org/W12006945","https://openalex.org/W4386739095","https://openalex.org/W1981194976","https://openalex.org/W2377389766","https://openalex.org/W3003110834","https://openalex.org/W2037714584"],"abstract_inverted_index":{"Most":[0],"bacteria":[1],"and":[2,17,37,86,107,115,133,140,169,176,186],"archaea":[3],"possess":[4],"multiple":[5,130],"antiviral":[6,193],"defence":[7,27,99,156,173,194],"systems":[8,28,40,157],"that":[9],"protect":[10],"against":[11],"infection":[12],"by":[13],"phages,":[14],"archaeal":[15,87],"viruses":[16],"mobile":[18],"genetic":[19],"elements.":[20],"Our":[21],"understanding":[22],"of":[23,26,63,112,128,137,154,192],"the":[24,33,51,61,68,104,129,138,155,179,190],"diversity":[25,175],"has":[29],"increased":[30],"greatly":[31],"in":[32,98,158],"last":[34],"few":[35],"years,":[36],"many":[38],"more":[39,94],"likely":[41],"await":[42],"discovery.":[43],"To":[44,59],"identify":[45],"defence-related":[46],"genes,":[47],"we":[48,65,119],"recently":[49],"developed":[50],"Prokaryotic":[52],"Antiviral":[53],"Defence":[54],"LOCator":[55],"(PADLOC)":[56],"bioinformatics":[57],"tool.":[58],"increase":[60,97],"accessibility":[62],"PADLOC,":[64],"describe":[66],"here":[67],"PADLOC":[69,146,180],"web":[70,90,147,181],"server":[71,91,148,182],"(freely":[72],"available":[73],"at":[74],"https://padloc.otago.ac.nz),":[75],"allowing":[76],"users":[77],"to":[78],"analyse":[79],"whole":[80],"genomes,":[81],"metagenomic":[82],"contigs,":[83],"plasmids,":[84],"phages":[85],"viruses.":[88],"The":[89,145],"includes":[92],"a":[93,151,184],"than":[95],"5-fold":[96],"system":[100,174],"types":[101],"detected":[102],"(since":[103],"first":[105],"release)":[106],"expanded":[108],"functionality":[109],"enabling":[110],"detection":[111,191],"CRISPR":[113],"arrays":[114],"retron":[116],"ncRNAs.":[117],"Here,":[118],"provide":[120],"user":[121],"information":[122],"such":[123],"as":[124],"input":[125],"options,":[126],"description":[127],"outputs,":[131],"limitations":[132],"considerations":[134],"for":[135,142,189],"interpretation":[136],"results,":[139],"guidance":[141],"subsequent":[143],"analyses.":[144],"also":[149],"houses":[150],"precomputed":[152],"database":[153],">":[159],"230,000":[160],"RefSeq":[161],"genomes.":[162],"These":[163],"data":[164],"reveal":[165],"two":[166],"taxa,":[167],"Campylobacterota":[168],"Spriochaetota,":[170],"with":[171],"unusual":[172],"abundance.":[177],"Overall,":[178],"provides":[183],"convenient":[185],"accessible":[187],"resource":[188],"systems.":[195]},"counts_by_year":[{"year":2026,"cited_by_count":21},{"year":2025,"cited_by_count":96},{"year":2024,"cited_by_count":63},{"year":2023,"cited_by_count":35},{"year":2022,"cited_by_count":6}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
