{"id":"https://openalex.org/W4282913408","doi":"https://doi.org/10.1093/nar/gkac394","title":"CB-Dock2: improved protein\u2013ligand blind docking by integrating cavity detection, docking and homologous template fitting","display_name":"CB-Dock2: improved protein\u2013ligand blind docking by integrating cavity detection, docking and homologous template fitting","publication_year":2022,"publication_date":"2022-05-05","ids":{"openalex":"https://openalex.org/W4282913408","doi":"https://doi.org/10.1093/nar/gkac394","pmid":"https://pubmed.ncbi.nlm.nih.gov/35609983"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac394","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac394","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W159/44379780/gkac394.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/50/W1/W159/44379780/gkac394.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088854393","display_name":"Yang Liu","orcid":"https://orcid.org/0000-0002-2517-9436"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Liu","raw_affiliation_strings":["Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University , Chengdu , China"],"raw_orcid":"https://orcid.org/0000-0002-2517-9436","affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University , Chengdu , China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027864301","display_name":"Xiaocong Yang","orcid":"https://orcid.org/0000-0003-0027-3861"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaocong Yang","raw_affiliation_strings":["Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University , Chengdu , China"],"raw_orcid":"https://orcid.org/0000-0003-0027-3861","affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University , Chengdu , China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103212142","display_name":"Jianhong Gan","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianhong Gan","raw_affiliation_strings":["Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University , Chengdu , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University , Chengdu , China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100443490","display_name":"Shuang Chen","orcid":"https://orcid.org/0000-0001-6308-0958"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210152908","display_name":"Chengdu Institute of Biology","ror":"https://ror.org/04w5etv87","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210152908"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuang Chen","raw_affiliation_strings":["Chengdu Institute of Biology, Chinese Academy of Sciences , Chengdu , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chengdu Institute of Biology, Chinese Academy of Sciences , Chengdu , China","institution_ids":["https://openalex.org/I4210152908","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057608418","display_name":"Zhi\u2010Xiong Jim Xiao","orcid":"https://orcid.org/0000-0003-2504-5742"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhi-Xiong Xiao","raw_affiliation_strings":["Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University , Chengdu , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University , Chengdu , China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045938742","display_name":"Yang Cao","orcid":"https://orcid.org/0000-0002-1925-2123"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210165554","display_name":"Sichuan Center for Disease Control and Prevention","ror":"https://ror.org/05nda1d55","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165554"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yang Cao","raw_affiliation_strings":["Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Microbiology and Metabolic Engineering Key Laboratory of Sichuan Province , Chengdu , China","Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University , Chengdu , China"],"raw_orcid":"https://orcid.org/0000-0002-1925-2123","affiliations":[{"raw_affiliation_string":"Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Microbiology and Metabolic Engineering Key Laboratory of Sichuan Province , Chengdu , China","institution_ids":["https://openalex.org/I4210165554"]},{"raw_affiliation_string":"Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University , Chengdu , China","institution_ids":["https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5045938742"],"corresponding_institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210165554"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":200.5821,"has_fulltext":false,"cited_by_count":1650,"citation_normalized_percentile":{"value":0.99996348,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"50","issue":"W1","first_page":"W159","last_page":"W164"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9790999889373779,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9746999740600586,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dock","display_name":"DOCK","score":0.9684360027313232},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.9381555318832397},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.6856629848480225},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.6076472401618958},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4759407043457031},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44797271490097046},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.4180721938610077},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4138655364513397},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.41256970167160034},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.3934587836265564},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.31400352716445923},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.2547455430030823},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.19782951474189758},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.16721612215042114},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1611270308494568},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13330841064453125}],"concepts":[{"id":"https://openalex.org/C93073132","wikidata":"https://www.wikidata.org/wiki/Q24726581","display_name":"DOCK","level":2,"score":0.9684360027313232},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.9381555318832397},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.6856629848480225},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.6076472401618958},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4759407043457031},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44797271490097046},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.4180721938610077},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4138655364513397},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.41256970167160034},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.3934587836265564},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.31400352716445923},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.2547455430030823},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.19782951474189758},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.16721612215042114},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1611270308494568},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13330841064453125},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020662","descriptor_name":"Guanine Nucleotide Exchange Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020662","descriptor_name":"Guanine Nucleotide Exchange Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020662","descriptor_name":"Guanine Nucleotide Exchange Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020690","descriptor_name":"GTPase-Activating Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020690","descriptor_name":"GTPase-Activating Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020690","descriptor_name":"GTPase-Activating Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac394","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac394","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W159/44379780/gkac394.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:35609983","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35609983","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9252749","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9252749","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac394","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac394","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W159/44379780/gkac394.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4699999988079071}],"awards":[{"id":"https://openalex.org/G5598991704","display_name":null,"funder_award_id":"81973243","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4282913408.pdf","grobid_xml":"https://content.openalex.org/works/W4282913408.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1927265873","https://openalex.org/W1983376893","https://openalex.org/W2018661561","https://openalex.org/W2025816743","https://openalex.org/W2029335938","https://openalex.org/W2069152576","https://openalex.org/W2100672820","https://openalex.org/W2101078720","https://openalex.org/W2108243628","https://openalex.org/W2120869341","https://openalex.org/W2130479394","https://openalex.org/W2134967712","https://openalex.org/W2136513242","https://openalex.org/W2152107372","https://openalex.org/W2165565773","https://openalex.org/W2169678694","https://openalex.org/W2520178085","https://openalex.org/W2551038855","https://openalex.org/W2768092025","https://openalex.org/W2807540482","https://openalex.org/W2955341169","https://openalex.org/W3030054993","https://openalex.org/W3094159774","https://openalex.org/W3116010476","https://openalex.org/W3168436232","https://openalex.org/W3183475563","https://openalex.org/W3185071860","https://openalex.org/W3186179742","https://openalex.org/W3201762491","https://openalex.org/W3210235812","https://openalex.org/W3212483788","https://openalex.org/W4200509818","https://openalex.org/W4206988326","https://openalex.org/W4213370488","https://openalex.org/W6729702000"],"related_works":["https://openalex.org/W4393853640","https://openalex.org/W3193731429","https://openalex.org/W2057846043","https://openalex.org/W2208175234","https://openalex.org/W2336040088","https://openalex.org/W2134662597","https://openalex.org/W4220718175","https://openalex.org/W1987493370","https://openalex.org/W4282913408","https://openalex.org/W3040256181"],"abstract_inverted_index":{"Protein-ligand":[0],"blind":[1,35,108],"docking":[2,36,60,68,109,113,129],"is":[3,148],"a":[4,34,126,133],"powerful":[5],"method":[6,61],"for":[7,93,139],"exploring":[8],"the":[9,15,59,72,83,88,118,140],"binding":[10,17,75,79,94],"sites":[11],"of":[12,19,91],"receptors":[13],"and":[14,28,78,105,120,136,142],"corresponding":[16],"poses":[18],"ligands.":[20],"It":[21],"has":[22,40],"seen":[23],"wide":[24],"applications":[25],"in":[26,74],"pharmaceutical":[27],"biological":[29],"researches.":[30],"Previously,":[31],"we":[32,56],"proposed":[33],"server,":[37,114],"CB-Dock,":[38],"which":[39,101],"been":[41],"under":[42],"heavy":[43],"use":[44],"(over":[45],"200":[46],"submissions":[47],"per":[48],"day)":[49],"by":[50,62],"researchers":[51],"worldwide":[52],"since":[53],"2019.":[54],"Here,":[55],"substantially":[57],"improved":[58],"combining":[63],"CB-Dock":[64,104],"with":[65,125],"our":[66],"template-based":[67],"engine":[69],"to":[70],"enhance":[71],"accuracy":[73],"site":[76],"identification":[77],"pose":[80,95],"prediction.":[81],"In":[82],"benchmark":[84],"tests,":[85],"it":[86,132],"yielded":[87],"success":[89],"rate":[90],"\u223c85%":[92],"prediction":[96],"(RMSD":[97],"<":[98],"2.0":[99],"\u00c5),":[100],"outperformed":[102],"original":[103],"most":[106],"popular":[107],"tools.":[110],"This":[111],"updated":[112],"named":[115],"CB-Dock2,":[116],"reconfigured":[117],"input":[119],"output":[121],"web":[122,146],"interfaces,":[123],"together":[124],"highly":[127],"automatic":[128],"pipeline,":[130],"making":[131],"particularly":[134],"efficient":[135],"easy-to-use":[137],"tool":[138],"bioinformatics":[141],"cheminformatics":[143],"communities.":[144],"The":[145],"server":[147],"freely":[149],"available":[150],"at":[151],"https://cadd.labshare.cn/cb-dock2/.":[152]},"counts_by_year":[{"year":2026,"cited_by_count":338},{"year":2025,"cited_by_count":733},{"year":2024,"cited_by_count":392},{"year":2023,"cited_by_count":170},{"year":2022,"cited_by_count":16}],"updated_date":"2026-05-13T08:25:38.343686","created_date":"2025-10-10T00:00:00"}
