{"id":"https://openalex.org/W4226313562","doi":"https://doi.org/10.1093/nar/gkac370","title":"SWORD2: hierarchical analysis of protein 3D structures","display_name":"SWORD2: hierarchical analysis of protein 3D structures","publication_year":2022,"publication_date":"2022-04-29","ids":{"openalex":"https://openalex.org/W4226313562","doi":"https://doi.org/10.1093/nar/gkac370","pmid":"https://pubmed.ncbi.nlm.nih.gov/35580056"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac370","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac370","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W732/44379165/gkac370.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/50/W1/W732/44379165/gkac370.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052986625","display_name":"Gabriel Cretin","orcid":"https://orcid.org/0000-0002-3522-7083"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210092978","display_name":"Laboratory of Excellence GR-Ex","ror":"https://ror.org/00ezvft90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210092978"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gabriel Cretin","raw_affiliation_strings":["Laboratoire d\u2019Excellence GR-Ex , 75015 Paris, France","Universit\u00e9 Paris Cit\u00e9 and Universit\u00e9 des Antilles and Universit\u00e9 de la R\u00e9union , INSERM, BIGR, F-75015 Paris, France"],"raw_orcid":"https://orcid.org/0000-0002-3522-7083","affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Excellence GR-Ex , 75015 Paris, France","institution_ids":["https://openalex.org/I4210092978"]},{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9 and Universit\u00e9 des Antilles and Universit\u00e9 de la R\u00e9union , INSERM, BIGR, F-75015 Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081577635","display_name":"Tatiana Galochkina","orcid":"https://orcid.org/0000-0002-3608-5208"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210092978","display_name":"Laboratory of Excellence GR-Ex","ror":"https://ror.org/00ezvft90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210092978"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Tatiana Galochkina","raw_affiliation_strings":["Laboratoire d\u2019Excellence GR-Ex , 75015 Paris, France","Universit\u00e9 Paris Cit\u00e9 and Universit\u00e9 des Antilles and Universit\u00e9 de la R\u00e9union , INSERM, BIGR, F-75015 Paris, France"],"raw_orcid":"https://orcid.org/0000-0002-3608-5208","affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Excellence GR-Ex , 75015 Paris, France","institution_ids":["https://openalex.org/I4210092978"]},{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9 and Universit\u00e9 des Antilles and Universit\u00e9 de la R\u00e9union , INSERM, BIGR, F-75015 Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066727566","display_name":"Yann Vander Meersche","orcid":"https://orcid.org/0000-0002-6680-8104"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210092978","display_name":"Laboratory of Excellence GR-Ex","ror":"https://ror.org/00ezvft90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210092978"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yann Vander\u00a0Meersche","raw_affiliation_strings":["Laboratoire d\u2019Excellence GR-Ex , 75015 Paris, France","Universit\u00e9 Paris Cit\u00e9 and Universit\u00e9 des Antilles and Universit\u00e9 de la R\u00e9union , INSERM, BIGR, F-75015 Paris, France"],"raw_orcid":"https://orcid.org/0000-0002-6680-8104","affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Excellence GR-Ex , 75015 Paris, France","institution_ids":["https://openalex.org/I4210092978"]},{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9 and Universit\u00e9 des Antilles and Universit\u00e9 de la R\u00e9union , INSERM, BIGR, F-75015 Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024376929","display_name":"Alexandre G. de Brevern","orcid":"https://orcid.org/0000-0001-7112-5626"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210092978","display_name":"Laboratory of Excellence GR-Ex","ror":"https://ror.org/00ezvft90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210092978"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alexandre\u00a0G de\u00a0Brevern","raw_affiliation_strings":["Laboratoire d\u2019Excellence GR-Ex , 75015 Paris, France","Universit\u00e9 Paris Cit\u00e9 and Universit\u00e9 des Antilles and Universit\u00e9 de la R\u00e9union , INSERM, BIGR, F-75015 Paris, France"],"raw_orcid":"https://orcid.org/0000-0001-7112-5626","affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Excellence GR-Ex , 75015 Paris, France","institution_ids":["https://openalex.org/I4210092978"]},{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9 and Universit\u00e9 des Antilles and Universit\u00e9 de la R\u00e9union , INSERM, BIGR, F-75015 Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055433325","display_name":"Guillaume Postic","orcid":"https://orcid.org/0000-0002-0380-0092"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Postic","raw_affiliation_strings":["Universit\u00e9 Paris-Saclay, Univ Evry , IBISC, 91020\u00a0Evry-Courcouronnes, France"],"raw_orcid":"https://orcid.org/0000-0002-0380-0092","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris-Saclay, Univ Evry , IBISC, 91020\u00a0Evry-Courcouronnes, France","institution_ids":["https://openalex.org/I4210107733","https://openalex.org/I277688954"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060243916","display_name":"Jean\u2010Christophe Gelly","orcid":"https://orcid.org/0000-0001-5138-361X"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210092978","display_name":"Laboratory of Excellence GR-Ex","ror":"https://ror.org/00ezvft90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210092978"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Jean-Christophe Gelly","raw_affiliation_strings":["Laboratoire d\u2019Excellence GR-Ex , 75015 Paris, France","Universit\u00e9 Paris Cit\u00e9 and Universit\u00e9 des Antilles and Universit\u00e9 de la R\u00e9union , INSERM, BIGR, F-75015 Paris, France"],"raw_orcid":"https://orcid.org/0000-0001-5138-361X","affiliations":[{"raw_affiliation_string":"Laboratoire d\u2019Excellence GR-Ex , 75015 Paris, France","institution_ids":["https://openalex.org/I4210092978"]},{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9 and Universit\u00e9 des Antilles and Universit\u00e9 de la R\u00e9union , INSERM, BIGR, F-75015 Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I154526488"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5060243916"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210092978"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3264,"currency":"EUR","value_usd":3520},"fwci":3.4667,"has_fulltext":false,"cited_by_count":44,"citation_normalized_percentile":{"value":0.93923907,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"50","issue":"W1","first_page":"W732","last_page":"W738"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7774096131324768},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5922454595565796},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5876598358154297},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5533791780471802},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.5156723260879517},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4492935240268707},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.44363951683044434},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.43150559067726135},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.4284839630126953},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.42651426792144775},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.400669664144516},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3386100232601166},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2674771249294281},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1477450430393219},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1458214521408081},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07946592569351196},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07479393482208252},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07401156425476074}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7774096131324768},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5922454595565796},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5876598358154297},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5533791780471802},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.5156723260879517},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4492935240268707},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.44363951683044434},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.43150559067726135},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.4284839630126953},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.42651426792144775},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.400669664144516},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3386100232601166},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2674771249294281},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1477450430393219},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1458214521408081},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07946592569351196},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07479393482208252},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07401156425476074},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkac370","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac370","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W732/44379165/gkac370.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:35580056","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35580056","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:hal-03738483v1","is_oa":false,"landing_page_url":"https://univ-evry.hal.science/hal-03738483","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2022, 50 (W1), pp.W732--W738. &#x27E8;10.1093/nar/gkac370&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:9252838","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9252838","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac370","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac370","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W732/44379165/gkac370.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1608086581","display_name":null,"funder_award_id":"ANR-18-IDEX-0001","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G4032633170","display_name":null,"funder_award_id":"ANR-21-CE45-0019","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4226313562.pdf","grobid_xml":"https://content.openalex.org/works/W4226313562.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1965827393","https://openalex.org/W1969692838","https://openalex.org/W1979132333","https://openalex.org/W1989816430","https://openalex.org/W2008708467","https://openalex.org/W2077515504","https://openalex.org/W2078247418","https://openalex.org/W2089252539","https://openalex.org/W2097632784","https://openalex.org/W2097775420","https://openalex.org/W2102588875","https://openalex.org/W2103388612","https://openalex.org/W2111374837","https://openalex.org/W2119902292","https://openalex.org/W2123681603","https://openalex.org/W2130479394","https://openalex.org/W2138116388","https://openalex.org/W2141920771","https://openalex.org/W2147199176","https://openalex.org/W2147805410","https://openalex.org/W2160286182","https://openalex.org/W2160649303","https://openalex.org/W2161072217","https://openalex.org/W2168040923","https://openalex.org/W2579272540","https://openalex.org/W2952126842","https://openalex.org/W2984761660","https://openalex.org/W3014088204","https://openalex.org/W3062307266","https://openalex.org/W3106745904","https://openalex.org/W3114734220","https://openalex.org/W3127535326","https://openalex.org/W3140562424","https://openalex.org/W3159719254","https://openalex.org/W3177828909","https://openalex.org/W3211795435","https://openalex.org/W3215918380","https://openalex.org/W4246356731","https://openalex.org/W4255594044"],"related_works":["https://openalex.org/W2260493136","https://openalex.org/W2113188411","https://openalex.org/W2976965029","https://openalex.org/W2382178265","https://openalex.org/W2055827177","https://openalex.org/W2072666835","https://openalex.org/W4248706500","https://openalex.org/W1999927713","https://openalex.org/W2939859775","https://openalex.org/W4252654006"],"abstract_inverted_index":{"Understanding":[0],"the":[1,30,81,84],"functions":[2],"and":[3,41,107,129],"origins":[4],"of":[5,19,33,83,127,134],"proteins":[6,126],"requires":[7],"splitting":[8],"these":[9],"macromolecules":[10],"into":[11,65],"fragments":[12],"that":[13,25,68,113],"could":[14],"be":[15,63,70,116],"independent":[16],"in":[17,124],"terms":[18],"folding,":[20],"activity,":[21],"or":[22],"evolution.":[23],"For":[24,77],"purpose,":[26],"structural":[27,75],"domains":[28],"are":[29,44],"typical":[31],"level":[32],"analysis,":[34],"but":[35],"shorter":[36],"segments,":[37],"such":[38],"as":[39,46],"subdomains":[40],"supersecondary":[42],"structures,":[43],"insightful":[45],"well.":[47],"Here,":[48],"we":[49],"propose":[50],"SWORD2,":[51],"a":[52],"web":[53,138],"server":[54,139],"for":[55,121],"exploring":[56],"how":[57],"an":[58],"input":[59],"protein":[60,135],"structure":[61],"may":[62],"decomposed":[64],"'Protein":[66],"Units'":[67],"can":[69],"hierarchically":[71],"assembled":[72],"to":[73,118,130],"delimit":[74],"domains.":[76],"each":[78],"partitioning":[79],"solution,":[80],"relevance":[82],"identified":[85],"substructures":[86],"is":[87,95,140],"estimated":[88],"through":[89],"different":[90],"measures.":[91],"This":[92],"multilevel":[93],"analysis":[94],"achieved":[96],"by":[97],"integrating":[98],"our":[99],"previous":[100],"work":[101],"on":[102],"domain":[103],"delineation,":[104],"'protein":[105],"peeling'":[106],"model":[108],"quality":[109],"assessment.":[110],"We":[111],"hope":[112],"SWORD2":[114],"will":[115],"useful":[117],"biologists":[119],"searching":[120],"key":[122],"regions":[123],"their":[125],"interest":[128],"bioinformaticians":[131],"building":[132],"datasets":[133],"structures.":[136],"The":[137],"freely":[141],"available":[142],"online:":[143],"https://www.dsimb.inserm.fr/SWORD2.":[144]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-07T13:39:58.223016","created_date":"2025-10-10T00:00:00"}
