{"id":"https://openalex.org/W4226181450","doi":"https://doi.org/10.1093/nar/gkac369","title":"DLEB: a web application for building deep learning models in biological research","display_name":"DLEB: a web application for building deep learning models in biological research","publication_year":2022,"publication_date":"2022-04-28","ids":{"openalex":"https://openalex.org/W4226181450","doi":"https://doi.org/10.1093/nar/gkac369","pmid":"https://pubmed.ncbi.nlm.nih.gov/35552439"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac369","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac369","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W254/44379194/gkac369.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/50/W1/W254/44379194/gkac369.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063845970","display_name":"Suyeon Wy","orcid":"https://orcid.org/0000-0003-1461-4815"},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Suyeon Wy","raw_affiliation_strings":["Department of Biomedical Science and Engineering, Konkuk University , Seoul 05029, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University , Seoul 05029, Republic of Korea","institution_ids":["https://openalex.org/I24062138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033232650","display_name":"Daehong Kwon","orcid":"https://orcid.org/0000-0003-2545-0430"},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Daehong Kwon","raw_affiliation_strings":["Department of Biomedical Science and Engineering, Konkuk University , Seoul 05029, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University , Seoul 05029, Republic of Korea","institution_ids":["https://openalex.org/I24062138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058896103","display_name":"Kisang Kwon","orcid":null},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kisang Kwon","raw_affiliation_strings":["Department of Biomedical Science and Engineering, Konkuk University , Seoul 05029, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University , Seoul 05029, Republic of Korea","institution_ids":["https://openalex.org/I24062138"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113322250","display_name":"Jaebum Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I24062138","display_name":"Konkuk University","ror":"https://ror.org/025h1m602","country_code":"KR","type":"education","lineage":["https://openalex.org/I24062138"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Jaebum Kim","raw_affiliation_strings":["Department of Biomedical Science and Engineering, Konkuk University , Seoul 05029, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Science and Engineering, Konkuk University , Seoul 05029, Republic of Korea","institution_ids":["https://openalex.org/I24062138"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5113322250"],"corresponding_institution_ids":["https://openalex.org/I24062138"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.2556,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.72921025,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"50","issue":"W1","first_page":"W254","last_page":"W260"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.8881617188453674},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7281897664070129},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7096382975578308},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6769828796386719},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4557175636291504},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4128006100654602},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3942132592201233},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.18297863006591797},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18115931749343872},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09161606431007385}],"concepts":[{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.8881617188453674},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7281897664070129},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7096382975578308},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6769828796386719},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4557175636291504},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4128006100654602},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3942132592201233},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.18297863006591797},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18115931749343872},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09161606431007385}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac369","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac369","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W254/44379194/gkac369.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:35552439","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35552439","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9252827","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9252827","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac369","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac369","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W254/44379194/gkac369.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6000000238418579,"display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4226181450.pdf","grobid_xml":"https://content.openalex.org/works/W4226181450.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W2006932105","https://openalex.org/W2018363492","https://openalex.org/W2126598433","https://openalex.org/W2194775991","https://openalex.org/W2198606573","https://openalex.org/W2581082771","https://openalex.org/W2594481151","https://openalex.org/W2788633781","https://openalex.org/W2809254203","https://openalex.org/W2887469830","https://openalex.org/W2889664156","https://openalex.org/W2913423296","https://openalex.org/W2935703330","https://openalex.org/W2945103729","https://openalex.org/W2951410692","https://openalex.org/W3035587935","https://openalex.org/W3035965352","https://openalex.org/W3041325230","https://openalex.org/W3099878876","https://openalex.org/W3197028786","https://openalex.org/W6652185761","https://openalex.org/W6652222425","https://openalex.org/W6703116779","https://openalex.org/W6728184133"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W3116064965","https://openalex.org/W3193760048","https://openalex.org/W4380075502","https://openalex.org/W2899267400"],"abstract_inverted_index":{"Deep":[0],"learning":[1,18,25,36,44,60,105,116,142,146,180],"has":[2,12],"been":[3],"applied":[4],"for":[5,55,79,98,102,108,136,144,165,176],"solving":[6],"many":[7,183],"biological":[8,153,163,185],"problems,":[9],"and":[10,27,89,119,148,155,161],"it":[11,51],"shown":[13],"outstanding":[14],"performance.":[15],"Applying":[16],"deep":[17,24,35,43,59,104,115,141,179],"in":[19,128],"research":[20],"requires":[21],"knowledge":[22],"of":[23,62,64,151,157],"theories":[26],"programming":[28],"skills,":[29],"but":[30],"researchers":[31,112],"have":[32],"developed":[33,86],"diverse":[34],"platforms":[37],"to":[38,41,57,125,181],"allow":[39],"users":[40],"build":[42],"models":[45,106,117,143,160],"without":[46],"programming.":[47],"Despite":[48],"these":[49,77],"efforts,":[50],"is":[52,72,188],"still":[53],"difficult":[54],"biologists":[56],"use":[58],"because":[61],"limitations":[63],"the":[65],"existing":[66],"platforms.":[67],"Therefore,":[68],"a":[69,87,172],"new":[70],"platform":[71,175],"necessary":[73],"that":[74,100],"can":[75,169],"solve":[76,182],"challenges":[78],"biologists.":[80,109],"To":[81],"alleviate":[82],"this":[83],"situation,":[84],"we":[85],"user-friendly":[88],"easy-to-use":[90],"web":[91],"application":[92],"called":[93],"DLEB":[94,110,131,168,187],"(Deep":[95],"Learning":[96],"Editor":[97],"Biologists)":[99],"allows":[101],"building":[103],"specialized":[107],"helps":[111],"(i)":[113],"design":[114],"easily":[118,177],"(ii)":[120],"generate":[121],"corresponding":[122],"Python":[123],"code":[124],"run":[126],"directly":[127],"their":[129],"machines.":[130],"provides":[132],"other":[133],"useful":[134],"features":[135],"biologists,":[137],"such":[138],"as":[139,171],"recommending":[140],"specific":[145],"tasks":[147],"data,":[149,154],"pre-processing":[150],"input":[152],"availability":[156],"various":[158],"template":[159],"example":[162],"datasets":[164],"model":[166],"training.":[167],"serve":[170],"highly":[173],"valuable":[174],"applying":[178],"important":[184],"problems.":[186],"freely":[189],"available":[190],"at":[191],"http://dleb.konkuk.ac.kr/.":[192]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
