{"id":"https://openalex.org/W4282934256","doi":"https://doi.org/10.1093/nar/gkac367","title":"GeCoViz: genomic context visualisation of prokaryotic genes from a functional and evolutionary perspective","display_name":"GeCoViz: genomic context visualisation of prokaryotic genes from a functional and evolutionary perspective","publication_year":2022,"publication_date":"2022-05-05","ids":{"openalex":"https://openalex.org/W4282934256","doi":"https://doi.org/10.1093/nar/gkac367","pmid":"https://pubmed.ncbi.nlm.nih.gov/35639770"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac367","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac367","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkac367","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011141134","display_name":"Jorge Botas","orcid":"https://orcid.org/0000-0001-7292-8981"},"institutions":[{"id":"https://openalex.org/I4210106474","display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria","ror":"https://ror.org/011q66e29","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210106474"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jorge Botas","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) - Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC), Campus de Montegancedo-UPM , Madrid , 28223, Spain"],"raw_orcid":"https://orcid.org/0000-0001-7292-8981","affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) - Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC), Campus de Montegancedo-UPM , Madrid , 28223, Spain","institution_ids":["https://openalex.org/I4210106474","https://openalex.org/I88060688","https://openalex.org/I4210162265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005533408","display_name":"\u00c1lvaro Rodr\u00edguez del R\u00edo","orcid":"https://orcid.org/0000-0003-3907-3904"},"institutions":[{"id":"https://openalex.org/I4210106474","display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria","ror":"https://ror.org/011q66e29","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210106474"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"\u00c1lvaro Rodr\u00edguez\u00a0del\u00a0R\u00edo","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) - Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC), Campus de Montegancedo-UPM , Madrid , 28223, Spain"],"raw_orcid":"https://orcid.org/0000-0003-3907-3904","affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) - Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC), Campus de Montegancedo-UPM , Madrid , 28223, Spain","institution_ids":["https://openalex.org/I4210106474","https://openalex.org/I88060688","https://openalex.org/I4210162265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027403999","display_name":"Joaqu\u00edn Giner\u2010Lamia","orcid":"https://orcid.org/0000-0003-1553-8295"},"institutions":[{"id":"https://openalex.org/I4210106474","display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria","ror":"https://ror.org/011q66e29","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210106474"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Joaqu\u00edn Giner-Lamia","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) - Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC), Campus de Montegancedo-UPM , Madrid , 28223, Spain","Departamento de Biotecnolog\u00eda-Biolog\u00eda Vegetal, Escuela T\u00e9cnica Superior de Ingenier\u00eda Agron\u00f3mica, Alimentaria y de Biosistemas, Universidad Polit\u00e9cnica de Madrid (UPM) , Madrid , 28040,\u00a0 Spain"],"raw_orcid":"https://orcid.org/0000-0003-1553-8295","affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) - Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC), Campus de Montegancedo-UPM , Madrid , 28223, Spain","institution_ids":["https://openalex.org/I4210106474","https://openalex.org/I88060688","https://openalex.org/I4210162265"]},{"raw_affiliation_string":"Departamento de Biotecnolog\u00eda-Biolog\u00eda Vegetal, Escuela T\u00e9cnica Superior de Ingenier\u00eda Agron\u00f3mica, Alimentaria y de Biosistemas, Universidad Polit\u00e9cnica de Madrid (UPM) , Madrid , 28040,\u00a0 Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050318013","display_name":"Jaime Huerta\u2010Cepas","orcid":"https://orcid.org/0000-0003-4195-5025"},"institutions":[{"id":"https://openalex.org/I4210106474","display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria","ror":"https://ror.org/011q66e29","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210106474"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jaime Huerta-Cepas","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) - Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC), Campus de Montegancedo-UPM , Madrid , 28223, Spain"],"raw_orcid":"https://orcid.org/0000-0003-4195-5025","affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) - Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC), Campus de Montegancedo-UPM , Madrid , 28223, Spain","institution_ids":["https://openalex.org/I4210106474","https://openalex.org/I88060688","https://openalex.org/I4210162265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5027403999","https://openalex.org/A5050318013"],"corresponding_institution_ids":["https://openalex.org/I4210106474","https://openalex.org/I4210162265","https://openalex.org/I88060688"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.1656,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.88198016,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"50","issue":"W1","first_page":"W352","last_page":"W357"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.9516111612319946},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8316102027893066},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6720343232154846},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6400843858718872},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.596431314945221},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5793660283088684},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5666574835777283},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.43183431029319763},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.42162415385246277},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3691480755805969},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3392196297645569},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1794813871383667},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.13291478157043457}],"concepts":[{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.9516111612319946},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8316102027893066},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6720343232154846},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6400843858718872},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.596431314945221},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5793660283088684},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5666574835777283},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.43183431029319763},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.42162415385246277},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3691480755805969},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3392196297645569},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1794813871383667},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.13291478157043457},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkac367","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac367","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:35639770","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35639770","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/278852","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/278852","pdf_url":null,"source":{"id":"https://openalex.org/S4306401639","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:9252766","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9252766","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac367","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac367","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.7099999785423279}],"awards":[{"id":"https://openalex.org/G2797944318","display_name":null,"funder_award_id":"FPI-SGIT2016-06","funder_id":"https://openalex.org/F4320309969","funder_display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria"},{"id":"https://openalex.org/G4993383890","display_name":null,"funder_award_id":"100010434","funder_id":"https://openalex.org/F4320312058","funder_display_name":"\u201cla Caixa\u201d Foundation"}],"funders":[{"id":"https://openalex.org/F4320309969","display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria","ror":"https://ror.org/011q66e29"},{"id":"https://openalex.org/F4320312058","display_name":"\u201cla Caixa\u201d Foundation","ror":"https://ror.org/03zhx9h04"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1557409643","https://openalex.org/W1972314084","https://openalex.org/W1990315216","https://openalex.org/W2003620008","https://openalex.org/W2059727365","https://openalex.org/W2072561431","https://openalex.org/W2103148270","https://openalex.org/W2107424557","https://openalex.org/W2107717979","https://openalex.org/W2109715166","https://openalex.org/W2110949039","https://openalex.org/W2140151217","https://openalex.org/W2145305377","https://openalex.org/W2340616476","https://openalex.org/W2529635913","https://openalex.org/W2559588208","https://openalex.org/W2809024516","https://openalex.org/W2900629010","https://openalex.org/W2968334948","https://openalex.org/W2981913463","https://openalex.org/W2998301942","https://openalex.org/W3016097831","https://openalex.org/W3019098313","https://openalex.org/W3087148269","https://openalex.org/W3095583226","https://openalex.org/W3107527779","https://openalex.org/W3124712583","https://openalex.org/W3203343200","https://openalex.org/W4240852056","https://openalex.org/W6703928786","https://openalex.org/W6769835102"],"related_works":["https://openalex.org/W2626545547","https://openalex.org/W2952105401","https://openalex.org/W4375955900","https://openalex.org/W2566862871","https://openalex.org/W4311179095","https://openalex.org/W4375852817","https://openalex.org/W4254915624","https://openalex.org/W2097001759","https://openalex.org/W2806342377","https://openalex.org/W2593890490"],"abstract_inverted_index":{"Synteny":[0],"conservation":[1,144],"analysis":[2,113],"is":[3,188],"a":[4],"well-established":[5],"methodology":[6],"to":[7,20,33,106],"investigate":[8],"the":[9,42,108,119,128,139,181],"potential":[10],"functional":[11,43,100],"role":[12],"of":[13,47,73,111,118,131,142,145,184],"unknown":[14],"prokaryotic":[15,65,185],"genes.":[16,121],"However,":[17],"bioinformatic":[18],"tools":[19],"reconstruct":[21],"and":[22,44,70,101,114,134,137,175,187],"visualise":[23],"genomic":[24,75,135,182],"contexts":[25],"usually":[26],"depend":[27],"on":[28,138,153],"slow":[29],"computations,":[30],"are":[31],"restricted":[32],"narrow":[34],"taxonomic":[35,109],"ranges,":[36],"and/or":[37],"do":[38],"not":[39],"allow":[40],"for":[41,165,179],"interactive":[45,71,176],"exploration":[46],"neighbouring":[48,120,146],"genes":[49],"across":[50],"different":[51],"species.":[52],"Here,":[53],"we":[54],"present":[55],"GeCoViz,":[56],"an":[57,171],"online":[58],"resource":[59],"built":[60],"upon":[61],"12":[62],"221":[63],"reference":[64],"genomes":[66],"that":[67],"provides":[68,115],"fast":[69,174],"visualisation":[72,123],"custom":[74,154],"regions":[76],"anchored":[77],"by":[78,86],"any":[79],"target":[80],"gene,":[81],"which":[82,148],"can":[83,149,159],"be":[84,150,160],"sought":[85],"either":[87],"name,":[88],"orthologous":[89],"group":[90],"(KEGGs,":[91],"eggNOGs),":[92],"protein":[93],"domain":[94],"(PFAM)":[95],"or":[96],"sequence.":[97],"To":[98],"facilitate":[99],"evolutionary":[102],"interpretation,":[103],"GeCoViz":[104,169],"allows":[105],"customise":[107],"scope":[110],"each":[112],"comprehensive":[116],"annotations":[117],"Interactive":[122],"options":[124],"include,":[125],"among":[126],"others,":[127],"scaled":[129],"representations":[130],"gene":[132],"lengths":[133],"distances,":[136],"fly":[140],"calculation":[141],"synteny":[143],"genes,":[147,186],"highlighted":[151],"based":[152],"thresholds.":[155],"The":[156],"resulting":[157],"plots":[158],"downloaded":[161],"as":[162],"high-quality":[163],"images":[164],"publishing":[166],"purposes.":[167],"Overall,":[168],"offers":[170],"easy-to-use,":[172],"comprehensive,":[173],"web-based":[177],"tool":[178],"investigating":[180],"context":[183],"freely":[189],"available":[190],"at":[191],"https://gecoviz.cgmlab.org.":[192]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T09:19:25.381259","created_date":"2025-10-10T00:00:00"}
