{"id":"https://openalex.org/W4225460848","doi":"https://doi.org/10.1093/nar/gkac351","title":"<i>iFeatureOmega:</i>an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets","display_name":"<i>iFeatureOmega:</i>an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets","publication_year":2022,"publication_date":"2022-04-25","ids":{"openalex":"https://openalex.org/W4225460848","doi":"https://doi.org/10.1093/nar/gkac351","pmid":"https://pubmed.ncbi.nlm.nih.gov/35524557"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac351","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W434/44378856/gkac351.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/50/W1/W434/44378856/gkac351.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013433350","display_name":"Zhen Chen","orcid":"https://orcid.org/0000-0002-9412-9774"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Chen","raw_affiliation_strings":["Center for Crop Genome Engineering, Henan Agricultural University , Zhengzhou 450046, China","Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University , Zhengzhou 450046, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Crop Genome Engineering, Henan Agricultural University , Zhengzhou 450046, China","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University , Zhengzhou 450046, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037255059","display_name":"Xuhan Liu","orcid":"https://orcid.org/0000-0003-2368-4655"},"institutions":[{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Xuhan Liu","raw_affiliation_strings":["Drug Discovery and Safety, Leiden Academic Centre for Drug Research , Einsteinweg 55, Leiden\u00a02333 CC, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-2368-4655","affiliations":[{"raw_affiliation_string":"Drug Discovery and Safety, Leiden Academic Centre for Drug Research , Einsteinweg 55, Leiden\u00a02333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024971176","display_name":"Pei Zhao","orcid":"https://orcid.org/0000-0002-6181-1777"},"institutions":[{"id":"https://openalex.org/I4210106793","display_name":"Cotton Research Institute","ror":"https://ror.org/01edrm178","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210106793","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pei Zhao","raw_affiliation_strings":["State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences (CAAS) , Anyang\u00a0455000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences (CAAS) , Anyang\u00a0455000, China","institution_ids":["https://openalex.org/I4210106793","https://openalex.org/I4210138501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100369818","display_name":"Chen Li","orcid":"https://orcid.org/0000-0002-1847-754X"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Chen Li","raw_affiliation_strings":["Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, Victoria 3800, Australia"],"raw_orcid":"https://orcid.org/0000-0002-1847-754X","affiliations":[{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, Victoria 3800, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100385375","display_name":"Yanan Wang","orcid":"https://orcid.org/0000-0002-3820-8443"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yanan Wang","raw_affiliation_strings":["Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, Victoria 3800, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, Victoria 3800, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063409460","display_name":"Fuyi Li","orcid":"https://orcid.org/0000-0001-5216-3213"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Fuyi Li","raw_affiliation_strings":["Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, Victoria 3800, Australia"],"raw_orcid":"https://orcid.org/0000-0001-5216-3213","affiliations":[{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, Victoria 3800, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016330265","display_name":"Tatsuya Akutsu","orcid":"https://orcid.org/0000-0001-9763-797X"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuya Akutsu","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University , Kyoto 611-0011, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University , Kyoto 611-0011, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049795464","display_name":"Chris Bain","orcid":"https://orcid.org/0000-0002-3142-5410"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Chris Bain","raw_affiliation_strings":["Monash Data Future Institutes, Monash University , Melbourne, Victoria 3800, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Monash Data Future Institutes, Monash University , Melbourne, Victoria 3800, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085039675","display_name":"Robin B. Gasser","orcid":"https://orcid.org/0000-0002-4423-1690"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Robin B Gasser","raw_affiliation_strings":["Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne , Parkville, Victoria 3010, Australia"],"raw_orcid":"https://orcid.org/0000-0002-4423-1690","affiliations":[{"raw_affiliation_string":"Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne , Parkville, Victoria 3010, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052624285","display_name":"Junzhou Li","orcid":"https://orcid.org/0009-0009-1172-370X"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junzhou Li","raw_affiliation_strings":["Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University , Zhengzhou 450046, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University , Zhengzhou 450046, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085263098","display_name":"Zuoren Yang","orcid":"https://orcid.org/0000-0001-5898-6309"},"institutions":[{"id":"https://openalex.org/I4210106793","display_name":"Cotton Research Institute","ror":"https://ror.org/01edrm178","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210106793","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zuoren Yang","raw_affiliation_strings":["State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences (CAAS) , Anyang\u00a0455000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences (CAAS) , Anyang\u00a0455000, China","institution_ids":["https://openalex.org/I4210106793","https://openalex.org/I4210138501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100618900","display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-7108-3574"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Xin Gao","raw_affiliation_strings":["Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955, Saudi Arabia"],"raw_orcid":"https://orcid.org/0000-0002-7108-3574","affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088423732","display_name":"Lukasz Kurgan","orcid":"https://orcid.org/0000-0002-7749-0314"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lukasz Kurgan","raw_affiliation_strings":["Department of Computer Science, Virginia Commonwealth University , Richmond, VA, USA"],"raw_orcid":"https://orcid.org/0000-0002-7749-0314","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Commonwealth University , Richmond, VA, USA","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012709797","display_name":"Jiangning Song","orcid":"https://orcid.org/0000-0001-8031-9086"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jiangning Song","raw_affiliation_strings":["Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, Victoria 3800, Australia","Monash Data Future Institutes, Monash University , Melbourne, Victoria 3800, Australia"],"raw_orcid":"https://orcid.org/0000-0001-8031-9086","affiliations":[{"raw_affiliation_string":"Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University , Melbourne, Victoria 3800, Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Monash Data Future Institutes, Monash University , Melbourne, Victoria 3800, Australia","institution_ids":["https://openalex.org/I56590836"]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5012709797","https://openalex.org/A5085263098","https://openalex.org/A5088423732","https://openalex.org/A5100618900"],"corresponding_institution_ids":["https://openalex.org/I184840846","https://openalex.org/I4210106793","https://openalex.org/I4210138501","https://openalex.org/I56590836","https://openalex.org/I71920554"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":6.967,"has_fulltext":true,"cited_by_count":97,"citation_normalized_percentile":{"value":0.98139637,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"50","issue":"W1","first_page":"W434","last_page":"W447"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.7610315084457397},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6895152926445007},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6388634443283081},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.6378363370895386},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5985479950904846},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5952003002166748},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5562159419059753},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.4543832540512085},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4440484046936035},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.43352892994880676},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.4234524369239807},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39886003732681274},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37341850996017456},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3668453097343445},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36270421743392944},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33144956827163696},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.23367682099342346},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.21737739443778992},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.20753559470176697},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.15694504976272583}],"concepts":[{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.7610315084457397},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6895152926445007},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6388634443283081},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.6378363370895386},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5985479950904846},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5952003002166748},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5562159419059753},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.4543832540512085},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4440484046936035},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.43352892994880676},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.4234524369239807},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39886003732681274},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37341850996017456},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3668453097343445},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36270421743392944},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33144956827163696},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.23367682099342346},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.21737739443778992},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.20753559470176697},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.15694504976272583},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkac351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac351","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W434/44378856/gkac351.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:35524557","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35524557","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9252729","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9252729","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:digital.library.adelaide.edu.au:2440/139575","is_oa":true,"landing_page_url":"https://hdl.handle.net/2440/139575","pdf_url":null,"source":{"id":"https://openalex.org/S4306401835","display_name":"Adelaide Research & Scholarship (AR&S) (University of Adelaide)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5681781","host_organization_name":"The University of Adelaide","host_organization_lineage":["https://openalex.org/I5681781"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dx.doi.org/10.1093/nar/gkac351","raw_type":"Journal article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/676657","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/676657","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac351","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W434/44378856/gkac351.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5199999809265137,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1127919792","display_name":"Stochastic modelling of telomere length regulation in ageing research","funder_award_id":"DP120104460","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G1904068096","display_name":null,"funder_award_id":"32170677","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G241248248","display_name":"Characterisation of plant cysteine proteases with therapeutic potential","funder_award_id":"LP110200333","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G2860927280","display_name":null,"funder_award_id":"32101797","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3131219531","display_name":null,"funder_award_id":"APP1127948","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G3775048211","display_name":null,"funder_award_id":"3132019323","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G4140531804","display_name":null,"funder_award_id":"3132020170","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5076668117","display_name":null,"funder_award_id":"R01 AI111965","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6267159765","display_name":null,"funder_award_id":"APP1144652","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G7686493431","display_name":"Harnessing systems biology by integrating proteomics and immunopeptidomics to understand prostate cancer carcinogenesis, diagnosis and treatment","funder_award_id":"1143366","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G7921690166","display_name":null,"funder_award_id":"R01 AI111965","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320320971","display_name":"Monash University","ror":"https://ror.org/02bfwt286"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"},{"id":"https://openalex.org/F4320335525","display_name":"Institute for Chemical Research, Kyoto University","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4225460848.pdf","grobid_xml":"https://content.openalex.org/works/W4225460848.grobid-xml"},"referenced_works_count":100,"referenced_works":["https://openalex.org/W7721663","https://openalex.org/W66443818","https://openalex.org/W652664929","https://openalex.org/W1494484168","https://openalex.org/W1969230095","https://openalex.org/W1975391500","https://openalex.org/W1981091069","https://openalex.org/W1989511016","https://openalex.org/W2005697780","https://openalex.org/W2008708467","https://openalex.org/W2009113274","https://openalex.org/W2011301426","https://openalex.org/W2011430131","https://openalex.org/W2014731953","https://openalex.org/W2024213882","https://openalex.org/W2038681300","https://openalex.org/W2039731962","https://openalex.org/W2048194168","https://openalex.org/W2052997154","https://openalex.org/W2053448121","https://openalex.org/W2059971420","https://openalex.org/W2061548680","https://openalex.org/W2075692164","https://openalex.org/W2087518504","https://openalex.org/W2091979734","https://openalex.org/W2100563036","https://openalex.org/W2101234009","https://openalex.org/W2109681606","https://openalex.org/W2110869427","https://openalex.org/W2114850508","https://openalex.org/W2123525093","https://openalex.org/W2126103104","https://openalex.org/W2130479394","https://openalex.org/W2132022337","https://openalex.org/W2135893370","https://openalex.org/W2135964318","https://openalex.org/W2143210482","https://openalex.org/W2152800101","https://openalex.org/W2160257187","https://openalex.org/W2171464043","https://openalex.org/W2171962405","https://openalex.org/W2174991771","https://openalex.org/W2252523470","https://openalex.org/W2294798173","https://openalex.org/W2315928616","https://openalex.org/W2342249984","https://openalex.org/W2423772299","https://openalex.org/W2471950830","https://openalex.org/W2513786151","https://openalex.org/W2516938563","https://openalex.org/W2528774686","https://openalex.org/W2612935389","https://openalex.org/W2793168264","https://openalex.org/W2886544065","https://openalex.org/W2886900083","https://openalex.org/W2888840714","https://openalex.org/W2894836881","https://openalex.org/W2900090807","https://openalex.org/W2907926287","https://openalex.org/W2910654431","https://openalex.org/W2921372942","https://openalex.org/W2933350524","https://openalex.org/W2933605448","https://openalex.org/W2945403072","https://openalex.org/W2946682182","https://openalex.org/W2947161483","https://openalex.org/W2947626248","https://openalex.org/W2967960129","https://openalex.org/W2971498163","https://openalex.org/W2972223935","https://openalex.org/W2972955359","https://openalex.org/W2981572887","https://openalex.org/W2986368198","https://openalex.org/W2988273873","https://openalex.org/W2992433902","https://openalex.org/W3003753408","https://openalex.org/W3009825960","https://openalex.org/W3022704604","https://openalex.org/W3024086681","https://openalex.org/W3028277078","https://openalex.org/W3035965352","https://openalex.org/W3037668068","https://openalex.org/W3089609802","https://openalex.org/W3095435122","https://openalex.org/W3099878876","https://openalex.org/W3111419662","https://openalex.org/W3112376646","https://openalex.org/W3129096424","https://openalex.org/W3134163647","https://openalex.org/W3164046276","https://openalex.org/W3164264961","https://openalex.org/W3211795435","https://openalex.org/W3212684988","https://openalex.org/W4205247356","https://openalex.org/W4213345021","https://openalex.org/W4255594044","https://openalex.org/W4293003482","https://openalex.org/W4306697720","https://openalex.org/W6600307240","https://openalex.org/W6777453911"],"related_works":["https://openalex.org/W2391481219","https://openalex.org/W2074440087","https://openalex.org/W1983817726","https://openalex.org/W2944930475","https://openalex.org/W4394858778","https://openalex.org/W2075692164","https://openalex.org/W4385255465","https://openalex.org/W4386344406","https://openalex.org/W1897312405","https://openalex.org/W2945172910"],"abstract_inverted_index":{"The":[0,210],"rapid":[1],"accumulation":[2],"of":[3,8,18,53,77,102,119,122,130,137,151,163,176,185],"molecular":[4,169],"data":[5,72,170],"motivates":[6],"development":[7],"innovative":[9],"approaches":[10,127],"to":[11,113,148,198],"computationally":[12],"characterize":[13,35,49],"sequences,":[14,95],"structures":[15,96],"and":[16,20,27,70,83,89,97,125,128,145,154,158,179,200,207,218,227],"functions":[17],"biological":[19,94],"chemical":[21],"molecules":[22],"in":[23,117,203],"an":[24],"efficient,":[25],"accessible":[26],"accurate":[28],"manner.":[29],"Notwithstanding":[30],"several":[31],"computational":[32,45,205],"tools":[33],"that":[34,47,65,173],"protein":[36],"or":[37],"nucleic":[38],"acids":[39],"data,":[40],"there":[41],"are":[42],"no":[43],"one-stop":[44],"toolkits":[46],"comprehensively":[48],"a":[50,62,74,140],"wide":[51],"range":[52],"biomolecules.":[54],"We":[55,133,182],"address":[56],"this":[57],"vital":[58],"need":[59],"by":[60],"developing":[61],"holistic":[63],"platform":[64,86],"generates":[66],"features":[67],"from":[68,225],"sequence":[69],"structural":[71],"for":[73,93],"diverse":[75],"collection":[76],"molecule":[78],"types.":[79],"Our":[80],"freely":[81,214],"available":[82,215],"easy-to-use":[84],"iFeatureOmega":[85,105,138,186,211],"generates,":[87],"analyzes":[88],"visualizes":[90],"189":[91],"representations":[92,172],"ligands.":[98],"To":[99],"the":[100,107,114,120,161,219],"best":[101],"our":[103],"knowledge,":[104],"provides":[106],"largest":[108],"scope":[109],"when":[110],"directly":[111],"compared":[112],"current":[115],"solutions,":[116],"terms":[118],"number":[121],"feature":[123],"extraction":[124],"analysis":[126],"coverage":[129],"different":[131],"molecules.":[132],"release":[134],"three":[135,189],"versions":[136,221],"including":[139],"webserver,":[141],"command":[142],"line":[143],"interface":[144,147],"graphical":[146],"satisfy":[149],"needs":[150],"experienced":[152],"bioinformaticians":[153],"less":[155],"computer-savvy":[156],"biologists":[157],"biochemists.":[159],"With":[160],"assistance":[162],"iFeatureOmega,":[164],"users":[165],"can":[166,195,222],"encode":[167],"their":[168],"into":[171],"facilitate":[174],"construction":[175],"predictive":[177],"models":[178],"analytical":[180],"studies.":[181],"highlight":[183],"benefits":[184],"based":[187],"on":[188],"research":[190,202],"applications,":[191],"demonstrating":[192],"how":[193],"it":[194],"be":[196,223],"used":[197],"accelerate":[199],"streamline":[201],"bioinformatics,":[204],"biology,":[206],"cheminformatics":[208],"areas.":[209],"webserver":[212],"is":[213],"at":[216],"http://ifeatureomega.erc.monash.edu":[217],"standalone":[220],"downloaded":[224],"https://github.com/Superzchen/iFeatureOmega-GUI/":[226],"https://github.com/Superzchen/iFeatureOmega-CLI/.":[228]},"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":32},{"year":2024,"cited_by_count":30},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":7}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2022-05-05T00:00:00"}