{"id":"https://openalex.org/W4280582807","doi":"https://doi.org/10.1093/nar/gkac324","title":"PhyloCloud: an online platform for making sense of phylogenomic data","display_name":"PhyloCloud: an online platform for making sense of phylogenomic data","publication_year":2022,"publication_date":"2022-05-03","ids":{"openalex":"https://openalex.org/W4280582807","doi":"https://doi.org/10.1093/nar/gkac324","pmid":"https://pubmed.ncbi.nlm.nih.gov/35544233"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac324","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac324","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W577/44377093/gkac324.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/50/W1/W577/44377093/gkac324.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069369297","display_name":"Ziqi Deng","orcid":"https://orcid.org/0000-0001-5347-3846"},"institutions":[{"id":"https://openalex.org/I4210106474","display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria","ror":"https://ror.org/011q66e29","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210106474"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ziqi Deng","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) and Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC) , 28223 Madrid , Spain"],"affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) and Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC) , 28223 Madrid , Spain","institution_ids":["https://openalex.org/I4210106474","https://openalex.org/I88060688","https://openalex.org/I4210162265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011141134","display_name":"Jorge Botas","orcid":"https://orcid.org/0000-0001-7292-8981"},"institutions":[{"id":"https://openalex.org/I4210106474","display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria","ror":"https://ror.org/011q66e29","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210106474"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jorge Botas","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) and Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC) , 28223 Madrid , Spain"],"affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) and Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC) , 28223 Madrid , Spain","institution_ids":["https://openalex.org/I4210106474","https://openalex.org/I88060688","https://openalex.org/I4210162265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091594546","display_name":"Carlos P. Cantalapiedra","orcid":"https://orcid.org/0000-0001-5263-533X"},"institutions":[{"id":"https://openalex.org/I4210106474","display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria","ror":"https://ror.org/011q66e29","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210106474"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos P Cantalapiedra","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) and Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC) , 28223 Madrid , Spain"],"affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) and Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC) , 28223 Madrid , Spain","institution_ids":["https://openalex.org/I4210106474","https://openalex.org/I88060688","https://openalex.org/I4210162265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007716384","display_name":"Ana Hern\u00e1ndez-Plaza","orcid":"https://orcid.org/0000-0002-9844-7999"},"institutions":[{"id":"https://openalex.org/I4210106474","display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria","ror":"https://ror.org/011q66e29","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210106474"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ana Hern\u00e1ndez-Plaza","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) and Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC) , 28223 Madrid , Spain"],"affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) and Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC) , 28223 Madrid , Spain","institution_ids":["https://openalex.org/I4210106474","https://openalex.org/I88060688","https://openalex.org/I4210162265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004474408","display_name":"J. Burguet\u2013Castell","orcid":"https://orcid.org/0000-0002-9198-5380"},"institutions":[{"id":"https://openalex.org/I4210106474","display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria","ror":"https://ror.org/011q66e29","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210106474"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jordi Burguet-Castell","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) and Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC) , 28223 Madrid , Spain"],"affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) and Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC) , 28223 Madrid , Spain","institution_ids":["https://openalex.org/I4210106474","https://openalex.org/I88060688","https://openalex.org/I4210162265"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050318013","display_name":"Jaime Huerta\u2010Cepas","orcid":"https://orcid.org/0000-0003-4195-5025"},"institutions":[{"id":"https://openalex.org/I4210106474","display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria","ror":"https://ror.org/011q66e29","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210106474"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jaime Huerta-Cepas","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) and Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC) , 28223 Madrid , Spain"],"affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid (UPM) and Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria (INIA-CSIC) , 28223 Madrid , Spain","institution_ids":["https://openalex.org/I4210106474","https://openalex.org/I88060688","https://openalex.org/I4210162265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5050318013"],"corresponding_institution_ids":["https://openalex.org/I4210106474","https://openalex.org/I4210162265","https://openalex.org/I88060688"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.5208,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.61013558,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"50","issue":"W1","first_page":"W577","last_page":"W582"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10487","display_name":"Plant and animal studies","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenomics","display_name":"Phylogenomics","score":0.8729803562164307},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7182303071022034},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.681584358215332},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6468883752822876},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6417089700698853},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.63007652759552},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.5743705034255981},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5475484132766724},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.530967116355896},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.4352731704711914},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4110700190067291},{"id":"https://openalex.org/keywords/tree-of-life","display_name":"Tree of life (biology)","score":0.41008591651916504},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3891395330429077},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34851372241973877},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.22740164399147034},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.21057173609733582},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.12873753905296326}],"concepts":[{"id":"https://openalex.org/C70343354","wikidata":"https://www.wikidata.org/wiki/Q3381973","display_name":"Phylogenomics","level":5,"score":0.8729803562164307},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7182303071022034},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.681584358215332},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6468883752822876},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6417089700698853},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.63007652759552},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.5743705034255981},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5475484132766724},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.530967116355896},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.4352731704711914},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4110700190067291},{"id":"https://openalex.org/C124388736","wikidata":"https://www.wikidata.org/wiki/Q3247497","display_name":"Tree of life (biology)","level":4,"score":0.41008591651916504},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3891395330429077},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34851372241973877},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.22740164399147034},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.21057173609733582},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.12873753905296326},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkac324","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac324","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W577/44377093/gkac324.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:35544233","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35544233","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/272529","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/272529","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:pubmedcentral.nih.gov:9252743","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9252743","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac324","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac324","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W577/44377093/gkac324.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1008005187","display_name":null,"funder_award_id":"AEI/FEDER, UE","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G1028331295","display_name":null,"funder_award_id":"MCIU/AEI/FEDER","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G1032624216","display_name":null,"funder_award_id":"/AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G1643641974","display_name":null,"funder_award_id":"AEI/FEDER","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G1643949827","display_name":null,"funder_award_id":"AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G2311694283","display_name":null,"funder_award_id":"AEI/FEDER","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G300979063","display_name":null,"funder_award_id":"10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3011659578","display_name":null,"funder_award_id":"MCIU/AEI/FEDER, UE","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G3231777463","display_name":null,"funder_award_id":"SEV-2016-0672 (2017-2021)","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3727459686","display_name":null,"funder_award_id":"13039/50110001103","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G3744876150","display_name":null,"funder_award_id":"PGC2018-098073-A-I00 MCIU/AEI/FEDER","funder_id":"https://openalex.org/F4320306192","funder_display_name":"Silicon Valley Community Foundation"},{"id":"https://openalex.org/G3765560856","display_name":null,"funder_award_id":"MCIU/AEI/FEDER","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G4126322094","display_name":null,"funder_award_id":"01100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4816244515","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G4855022228","display_name":null,"funder_award_id":"SEV-2016-0672 (2017-2021)","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G5080475149","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G532703699","display_name":null,"funder_award_id":"SEV-2016-0672 (2017-2021","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G5332678444","display_name":null,"funder_award_id":"SEV-2016-0672","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G6063137639","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G6361946282","display_name":null,"funder_award_id":"PGC2018-098073-A-I00","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G661330594","display_name":null,"funder_award_id":"00110","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G6685425346","display_name":null,"funder_award_id":"0011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7084143925","display_name":null,"funder_award_id":"AEI/10","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7115649624","display_name":null,"funder_award_id":"FEDER, UE","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7244096782","display_name":null,"funder_award_id":"PGC2018-098073-A-I00 MCIU/AEI/FEDER","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G7266728691","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7340441588","display_name":null,"funder_award_id":"10.13039/501100011033","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G7535663061","display_name":null,"funder_award_id":"AEI/10.","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7805626310","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G7868538544","display_name":null,"funder_award_id":"PGC2018-09","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G800294006","display_name":null,"funder_award_id":"PGC2018-098073-A-I00","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G8063416118","display_name":null,"funder_award_id":"PGC2018","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G8260616629","display_name":null,"funder_award_id":"011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8497050386","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G8516412140","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G8638682022","display_name":null,"funder_award_id":"10.13039/50110001103","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8657080188","display_name":null,"funder_award_id":"SEV-2016-0672","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G8702502177","display_name":null,"funder_award_id":"AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"}],"funders":[{"id":"https://openalex.org/F4320306192","display_name":"Silicon Valley Community Foundation","ror":"https://ror.org/001ader08"},{"id":"https://openalex.org/F4320315062","display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades","ror":null},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4280582807.pdf","grobid_xml":"https://content.openalex.org/works/W4280582807.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W2031611770","https://openalex.org/W2032961150","https://openalex.org/W2041704188","https://openalex.org/W2059359550","https://openalex.org/W2079213755","https://openalex.org/W2115888213","https://openalex.org/W2127322768","https://openalex.org/W2129589314","https://openalex.org/W2139736670","https://openalex.org/W2157701114","https://openalex.org/W2160378127","https://openalex.org/W2162327194","https://openalex.org/W2162371815","https://openalex.org/W2167455933","https://openalex.org/W2170041483","https://openalex.org/W2277953252","https://openalex.org/W2287520872","https://openalex.org/W2344334426","https://openalex.org/W2513727910","https://openalex.org/W2883251903","https://openalex.org/W2900629010","https://openalex.org/W2903099246","https://openalex.org/W2940690307","https://openalex.org/W2949239325","https://openalex.org/W3048090444","https://openalex.org/W3156458251","https://openalex.org/W3200103613","https://openalex.org/W3208467155","https://openalex.org/W3210441301"],"related_works":["https://openalex.org/W2056568233","https://openalex.org/W2763775416","https://openalex.org/W2024424737","https://openalex.org/W3140834074","https://openalex.org/W1979959438","https://openalex.org/W2011735044","https://openalex.org/W1975481886","https://openalex.org/W2293575453","https://openalex.org/W49511611","https://openalex.org/W2124975729"],"abstract_inverted_index":{"Phylogenomics":[0],"data":[1,44],"have":[2],"grown":[3],"exponentially":[4],"over":[5],"the":[6,38],"last":[7],"decades.":[8],"It":[9],"is":[10,193],"currently":[11],"common":[12,82],"for":[13,57,168],"genome-wide":[14],"projects":[15],"to":[16,81,106,111,150],"generate":[17],"hundreds":[18],"or":[19,124,131,179],"even":[20],"thousands":[21],"of":[22,42,189],"phylogenetic":[23,74],"trees":[24,154],"and":[25,40,50,71,84,98,155,161,172],"multiple":[26,162],"sequence":[27,163],"alignments,":[28],"which":[29,146],"may":[30],"also":[31,78,185],"be":[32,148],"very":[33,152],"large":[34,73,153],"in":[35],"size.":[36],"However,":[37],"analysis":[39],"interpretation":[41],"such":[43,86,128],"still":[45],"depends":[46],"on":[47,142],"custom":[48,159],"bioinformatic":[49],"visualisation":[51,139],"workflows":[52],"that":[53,108],"are":[54],"largely":[55],"unattainable":[56],"non-expert":[58],"users.":[59],"Here,":[60],"we":[61],"present":[62],"PhyloCloud,":[63],"an":[64],"online":[65],"platform":[66,166],"aimed":[67],"at":[68,195],"hosting,":[69],"indexing":[70],"exploring":[72],"tree":[75,94,122,138,170,174],"collections,":[76],"providing":[77],"seamless":[79],"access":[80,105],"analyses":[83],"operations,":[85],"as":[87,129,186],"node":[88],"annotation,":[89],"searching,":[90],"topology":[91],"editing,":[92],"automatic":[93],"rooting,":[95],"orthology":[96],"detection":[97],"more.":[99],"In":[100],"addition,":[101],"PhyloCloud":[102,134,192],"provides":[103],"quick":[104],"tools":[107],"allow":[109],"users":[110],"build":[112],"their":[113],"own":[114],"phylogenies":[115],"using":[116],"fast":[117],"predefined":[118],"workflows,":[119],"graphically":[120],"compare":[121],"topologies,":[123],"query":[125],"taxonomic":[126],"databases":[127],"NBCI":[130],"GTDB.":[132],"Finally,":[133],"offers":[135],"a":[136,187],"novel":[137],"system":[140],"based":[141],"ETE":[143],"Toolkit":[144],"v4.0,":[145],"can":[147],"used":[149],"explore":[151],"enhance":[156],"them":[157,181],"with":[158],"annotations":[160],"alignments.":[164],"The":[165],"allows":[167],"sharing":[169],"collections":[171],"specific":[173],"views":[175],"via":[176],"private":[177],"links,":[178],"make":[180],"fully":[182],"public,":[183],"serving":[184],"repository":[188],"phylogenomic":[190],"data.":[191],"available":[194],"https://phylocloud.cgmlab.org.":[196]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
