{"id":"https://openalex.org/W4226381600","doi":"https://doi.org/10.1093/nar/gkac323","title":"GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs","display_name":"GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs","publication_year":2022,"publication_date":"2022-04-22","ids":{"openalex":"https://openalex.org/W4226381600","doi":"https://doi.org/10.1093/nar/gkac323","pmid":"https://pubmed.ncbi.nlm.nih.gov/35524575"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac323","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac323","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W392/44377222/gkac323.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/50/W1/W392/44377222/gkac323.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071320418","display_name":"Charles Abreu Santana","orcid":"https://orcid.org/0000-0001-7207-0858"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Charles A Santana","raw_affiliation_strings":["Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais , Belo Horizonte\u00a031270-901, Brazil","Department of Computer Science, Universidade Federal de Minas Gerais , Belo Horizonte\u00a031270-901, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais , Belo Horizonte\u00a031270-901, Brazil","institution_ids":["https://openalex.org/I110200422"]},{"raw_affiliation_string":"Department of Computer Science, Universidade Federal de Minas Gerais , Belo Horizonte\u00a031270-901, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010423483","display_name":"Sandro Carvalho Izidoro","orcid":"https://orcid.org/0000-0001-5555-3321"},"institutions":[{"id":"https://openalex.org/I8165072","display_name":"Universidade Federal de Itajub\u00e1","ror":"https://ror.org/00235nr42","country_code":"BR","type":"education","lineage":["https://openalex.org/I8165072"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Sandro C Izidoro","raw_affiliation_strings":["Institute of Technological Sciences (ICT), Advanced Campus at Itabira, Universidade Federal de Itajub\u00e1 , Itabira\u00a035903-087, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Technological Sciences (ICT), Advanced Campus at Itabira, Universidade Federal de Itajub\u00e1 , Itabira\u00a035903-087, Brazil","institution_ids":["https://openalex.org/I8165072"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069672238","display_name":"Raquel C. de Melo-Minardi","orcid":"https://orcid.org/0000-0001-5190-100X"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Raquel C de\u00a0Melo-Minardi","raw_affiliation_strings":["Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais , Belo Horizonte\u00a031270-901, Brazil","Department of Computer Science, Universidade Federal de Minas Gerais , Belo Horizonte\u00a031270-901, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais , Belo Horizonte\u00a031270-901, Brazil","institution_ids":["https://openalex.org/I110200422"]},{"raw_affiliation_string":"Department of Computer Science, Universidade Federal de Minas Gerais , Belo Horizonte\u00a031270-901, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078919568","display_name":"Jonathan D. Tyzack","orcid":"https://orcid.org/0000-0003-4827-9023"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jonathan\u00a0D Tyzack","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus , Hinxton, Cambridge CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus , Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035707479","display_name":"Ant\u00f3nio J. M. Ribeiro","orcid":"https://orcid.org/0000-0002-2533-1231"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ant\u00f3nio J M Ribeiro","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus , Hinxton, Cambridge CB10 1SD, UK"],"raw_orcid":"https://orcid.org/0000-0002-2533-1231","affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus , Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071950872","display_name":"Douglas E. V. Pires","orcid":"https://orcid.org/0000-0002-3004-2119"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Douglas E V Pires","raw_affiliation_strings":["School of Computing and Information Systems, University of Melbourne , Parkville\u00a03052, Australia"],"raw_orcid":"https://orcid.org/0000-0002-3004-2119","affiliations":[{"raw_affiliation_string":"School of Computing and Information Systems, University of Melbourne , Parkville\u00a03052, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068874280","display_name":"Janet M. Thornton","orcid":"https://orcid.org/0000-0003-0824-4096"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Janet\u00a0M Thornton","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus , Hinxton, Cambridge CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus , Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021817826","display_name":"Sabrina de Azevedo Silveira","orcid":"https://orcid.org/0000-0002-4723-2349"},"institutions":[{"id":"https://openalex.org/I146165071","display_name":"Universidade Federal de Vi\u00e7osa","ror":"https://ror.org/0409dgb37","country_code":"BR","type":"education","lineage":["https://openalex.org/I146165071"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Sabrina de\u00a0A.\u00a0Silveira","raw_affiliation_strings":["Department of Computer Science, Universidade Federal de Vi\u00e7osa , Vi\u00e7osa\u00a036570-900, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-4723-2349","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Universidade Federal de Vi\u00e7osa , Vi\u00e7osa\u00a036570-900, Brazil","institution_ids":["https://openalex.org/I146165071"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5021817826"],"corresponding_institution_ids":["https://openalex.org/I146165071"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.8737,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.91861327,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"50","issue":"W1","first_page":"W392","last_page":"W397"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/grasp","display_name":"GRASP","score":0.9179168939590454},{"id":"https://openalex.org/keywords/residue","display_name":"Residue (chemistry)","score":0.5522319674491882},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5271273255348206},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5252133011817932},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5106402039527893},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5052655339241028},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.49767163395881653},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4540886878967285},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4342818260192871},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4259706139564514},{"id":"https://openalex.org/keywords/macromolecule","display_name":"Macromolecule","score":0.41342881321907043},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36328527331352234},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35388079285621643},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.29416489601135254},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2878841459751129},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.21143144369125366},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.17186105251312256},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1656453013420105},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.1259998083114624}],"concepts":[{"id":"https://openalex.org/C171268870","wikidata":"https://www.wikidata.org/wiki/Q1486676","display_name":"GRASP","level":2,"score":0.9179168939590454},{"id":"https://openalex.org/C2781338088","wikidata":"https://www.wikidata.org/wiki/Q903495","display_name":"Residue (chemistry)","level":2,"score":0.5522319674491882},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5271273255348206},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5252133011817932},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5106402039527893},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5052655339241028},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.49767163395881653},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4540886878967285},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4342818260192871},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4259706139564514},{"id":"https://openalex.org/C204389451","wikidata":"https://www.wikidata.org/wiki/Q178593","display_name":"Macromolecule","level":2,"score":0.41342881321907043},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36328527331352234},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35388079285621643},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.29416489601135254},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2878841459751129},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.21143144369125366},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.17186105251312256},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1656453013420105},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.1259998083114624},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac323","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac323","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W392/44377222/gkac323.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:35524575","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35524575","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9252730","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9252730","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac323","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac323","pdf_url":"https://academic.oup.com/nar/article-pdf/50/W1/W392/44377222/gkac323.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1432959653","display_name":null,"funder_award_id":"BB123456","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5860157428","display_name":null,"funder_award_id":"AA123456","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6074959722","display_name":null,"funder_award_id":"051/2013","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322980","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de Minas Gerais","ror":"https://ror.org/00nc55f03"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1927265873","https://openalex.org/W1964640688","https://openalex.org/W2000588380","https://openalex.org/W2018661561","https://openalex.org/W2040595595","https://openalex.org/W2059215264","https://openalex.org/W2090794687","https://openalex.org/W2096679774","https://openalex.org/W2104812418","https://openalex.org/W2115336138","https://openalex.org/W2123440974","https://openalex.org/W2126048802","https://openalex.org/W2126754352","https://openalex.org/W2132395520","https://openalex.org/W2140538197","https://openalex.org/W2144258433","https://openalex.org/W2154657801","https://openalex.org/W2158964183","https://openalex.org/W2164088236","https://openalex.org/W2609293186","https://openalex.org/W2617750324","https://openalex.org/W2740924709","https://openalex.org/W2770647690","https://openalex.org/W2807540482","https://openalex.org/W2887981960","https://openalex.org/W2950200056","https://openalex.org/W3007743886","https://openalex.org/W3095583226","https://openalex.org/W3116801402","https://openalex.org/W7075630220"],"related_works":["https://openalex.org/W2163296013","https://openalex.org/W2743859443","https://openalex.org/W2326995835","https://openalex.org/W165915117","https://openalex.org/W2059402478","https://openalex.org/W2123347777","https://openalex.org/W4387804363","https://openalex.org/W2019547100","https://openalex.org/W2477150073","https://openalex.org/W2515493494"],"abstract_inverted_index":{"Proteins":[0],"are":[1,33,69],"essential":[2],"macromolecules":[3],"for":[4,131,153,158,161],"the":[5,63,142],"maintenance":[6],"of":[7,11,30,34,65,116,165],"living":[8],"systems.":[9],"Many":[10],"them":[12],"perform":[13],"their":[14],"function":[15],"by":[16],"interacting":[17],"with":[18],"other":[19],"molecules":[20],"in":[21,45,149],"regions":[22,32,57],"called":[23],"binding":[24,56,89,105,129,151],"sites.":[25],"The":[26,108],"identification":[27],"and":[28,51,71,160],"characterization":[29],"these":[31],"fundamental":[35,43],"importance":[36],"to":[37,62,87,101,127,146],"determine":[38],"protein":[39,133],"function,":[40],"being":[41],"a":[42,77,91,132,162],"step":[44],"processes":[46],"such":[47,55],"as":[48,122],"drug":[49],"design":[50],"discovery.":[52],"However,":[53],"identifying":[54],"is":[58,120,173],"not":[59],"trivial":[60],"due":[61],"drawbacks":[64],"experimental":[66],"methods,":[67],"which":[68],"costly":[70],"time-consuming.":[72],"Here":[73],"we":[74],"propose":[75],"GRaSP-web,":[76],"web":[78],"server":[79],"that":[80,97],"uses":[81,98],"GRaSP":[82],"(Graph-based":[83],"Residue":[84],"neighborhood":[85],"Strategy":[86],"Predict":[88],"sites),":[90],"residue-centric":[92,113,137],"method":[93,109,138],"based":[94],"on":[95,141],"graphs":[96],"machine":[99],"learning":[100],"predict":[102,128],"putative":[103],"ligand":[104],"site":[106],"residues.":[107],"outperformed":[110],"6":[111],"state-of-the-art":[112,136],"methods":[114],"(MCC":[115,156],"0.61).":[117,171],"Also,":[118],"GRaSP-web":[119],"scalable":[121],"it":[123],"takes":[124,139],"10-20":[125],"seconds":[126],"sites":[130,152],"complex":[134],"(the":[135],"2-5h":[140],"average).":[143],"It":[144],"proved":[145],"be":[147],"consistent":[148],"predicting":[150],"bound/unbound":[154],"structures":[155],"0.61":[157],"both)":[159],"large":[163],"dataset":[164],"multi-chain":[166],"proteins":[167],"(4500":[168],"entries,":[169],"MCC":[170],"GRaSPWeb":[172],"freely":[174],"available":[175],"at":[176],"https://grasp.ufv.br.":[177]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
