{"id":"https://openalex.org/W4309908782","doi":"https://doi.org/10.1093/nar/gkac1071","title":"GENCODE: reference annotation for the human and mouse genomes in 2023","display_name":"GENCODE: reference annotation for the human and mouse genomes in 2023","publication_year":2022,"publication_date":"2022-11-24","ids":{"openalex":"https://openalex.org/W4309908782","doi":"https://doi.org/10.1093/nar/gkac1071"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac1071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac1071","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D942/48440716/gkac1071.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D942/48440716/gkac1071.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030993950","display_name":"Adam Frankish","orcid":"https://orcid.org/0000-0002-4333-628X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Adam Frankish","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068937120","display_name":"S\u00edlvia Carbonell Sala","orcid":"https://orcid.org/0000-0001-7956-6215"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"S\u00edlvia Carbonell-Sala","raw_affiliation_strings":["Department of Bioinformatics and Genomics , Centre for Genomic Regulation (CRG) , The Barcelona Institute of Science andTechnology, Dr. Aiguader 88, Barcelona \u00a008003, Catalonia, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Genomics , Centre for Genomic Regulation (CRG) , The Barcelona Institute of Science andTechnology, Dr. Aiguader 88, Barcelona \u00a008003, Catalonia, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054009720","display_name":"Mark Diekhans","orcid":"https://orcid.org/0000-0002-0430-0989"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Diekhans","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California , Santa Cruz ,\u00a0CA\u00a095064, USA"],"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California , Santa Cruz ,\u00a0CA\u00a095064, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066586114","display_name":"Irwin Jungreis","orcid":"https://orcid.org/0000-0002-3197-5367"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I126820664","display_name":"Vassar College","ror":"https://ror.org/022x6qg61","country_code":"US","type":"education","lineage":["https://openalex.org/I126820664"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Irwin Jungreis","raw_affiliation_strings":["Broad Institute of MIT and Harvard , 415 Main Street , Cambridge , MA \u00a002142, USA","MIT Computer Science and Artificial Intelligence Laboratory , 32 Vassar St, Cambridge , MA \u00a002139, USA"],"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard , 415 Main Street , Cambridge , MA \u00a002142, USA","institution_ids":["https://openalex.org/I107606265"]},{"raw_affiliation_string":"MIT Computer Science and Artificial Intelligence Laboratory , 32 Vassar St, Cambridge , MA \u00a002139, USA","institution_ids":["https://openalex.org/I126820664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088613164","display_name":"Jane Loveland","orcid":"https://orcid.org/0000-0002-7669-2934"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jane\u00a0E Loveland","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038283509","display_name":"Jonathan M. Mudge","orcid":"https://orcid.org/0000-0003-4789-7495"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jonathan\u00a0M Mudge","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035528606","display_name":"Cristina Sisu","orcid":"https://orcid.org/0000-0001-9371-0797"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Cristina Sisu","raw_affiliation_strings":["Department of Life Sciences, Brunel University London , Uxbridge \u00a0UB8 3PH, UK","Department of Molecular Biophysics and Biochemistry, Yale University , New Haven , CT\u00a0 06520 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Life Sciences, Brunel University London , Uxbridge \u00a0UB8 3PH, UK","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University , New Haven , CT\u00a0 06520 , USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061901960","display_name":"James C. Wright","orcid":"https://orcid.org/0000-0001-6950-4328"},"institutions":[{"id":"https://openalex.org/I142947616","display_name":"Institute of Cancer Research","ror":"https://ror.org/043jzw605","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I142947616"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James\u00a0C Wright","raw_affiliation_strings":["Functional Proteomics, Division of Cancer Biology, Institute of Cancer Research , 237 Fulham Road , London \u00a0SW3 6JB, UK"],"affiliations":[{"raw_affiliation_string":"Functional Proteomics, Division of Cancer Biology, Institute of Cancer Research , 237 Fulham Road , London \u00a0SW3 6JB, UK","institution_ids":["https://openalex.org/I142947616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027947345","display_name":"Carme Arnan","orcid":"https://orcid.org/0000-0002-7431-2088"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carme Arnan","raw_affiliation_strings":["Department of Bioinformatics and Genomics , Centre for Genomic Regulation (CRG) , The Barcelona Institute of Science andTechnology, Dr. Aiguader 88, Barcelona \u00a008003, Catalonia, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Genomics , Centre for Genomic Regulation (CRG) , The Barcelona Institute of Science andTechnology, Dr. Aiguader 88, Barcelona \u00a008003, Catalonia, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029637377","display_name":"If Barnes","orcid":"https://orcid.org/0000-0001-9303-4610"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"If Barnes","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037613439","display_name":"Abhimanyu Banerjee","orcid":"https://orcid.org/0000-0003-3047-6803"},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abhimanyu Banerjee","raw_affiliation_strings":["Department of Computer Science, Stanford University , Palo Alto , CA , USA","Department of Genetics, Stanford University , Palo Alto , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University , Palo Alto , CA , USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Genetics, Stanford University , Palo Alto , CA , USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086726082","display_name":"Ruth Bennett","orcid":"https://orcid.org/0000-0002-9009-4607"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ruth Bennett","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045305670","display_name":"Andrew Berry","orcid":"https://orcid.org/0000-0001-5096-7701"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Berry","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029594700","display_name":"Alexandra Bignell","orcid":"https://orcid.org/0000-0002-5926-7020"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexandra Bignell","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113987206","display_name":"Carles Boix","orcid":"https://orcid.org/0000-0001-9212-856X"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I126820664","display_name":"Vassar College","ror":"https://ror.org/022x6qg61","country_code":"US","type":"education","lineage":["https://openalex.org/I126820664"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carles Boix","raw_affiliation_strings":["Broad Institute of MIT and Harvard , 415 Main Street , Cambridge , MA \u00a002142, USA","MIT Computer Science and Artificial Intelligence Laboratory , 32 Vassar St, Cambridge , MA \u00a002139, USA"],"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard , 415 Main Street , Cambridge , MA \u00a002142, USA","institution_ids":["https://openalex.org/I107606265"]},{"raw_affiliation_string":"MIT Computer Science and Artificial Intelligence Laboratory , 32 Vassar St, Cambridge , MA \u00a002139, USA","institution_ids":["https://openalex.org/I126820664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017543247","display_name":"Ferriol Calvet","orcid":"https://orcid.org/0000-0003-1841-9881"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ferriol Calvet","raw_affiliation_strings":["Department of Bioinformatics and Genomics , Centre for Genomic Regulation (CRG) , The Barcelona Institute of Science andTechnology, Dr. Aiguader 88, Barcelona \u00a008003, Catalonia, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Genomics , Centre for Genomic Regulation (CRG) , The Barcelona Institute of Science andTechnology, Dr. Aiguader 88, Barcelona \u00a008003, Catalonia, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001297339","display_name":"Daniel Cerd\u00e1n-V\u00e9lez","orcid":"https://orcid.org/0000-0003-4499-6201"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Daniel Cerd\u00e1n-V\u00e9lez","raw_affiliation_strings":["Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO) , Calle Melchor Fernandez Almagro, 3, 28029 Madrid , Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO) , Calle Melchor Fernandez Almagro, 3, 28029 Madrid , Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007575726","display_name":"Fiona Cunningham","orcid":"https://orcid.org/0000-0002-7445-2419"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Fiona Cunningham","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033490900","display_name":"Claire Davidson","orcid":"https://orcid.org/0000-0002-4910-8202"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Claire Davidson","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009332598","display_name":"Sarah Donaldson","orcid":"https://orcid.org/0000-0002-2576-3173"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sarah Donaldson","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000311342","display_name":"Cagatay Dursun","orcid":"https://orcid.org/0000-0002-0897-7671"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cagatay Dursun","raw_affiliation_strings":["Department of Molecular Biophysics and Biochemistry, Yale University , New Haven , CT\u00a0 06520 , USA","Program in Computational Biology and Bioinformatics, Yale University , New Haven , CT \u00a006520, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University , New Haven , CT\u00a0 06520 , USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Program in Computational Biology and Bioinformatics, Yale University , New Haven , CT \u00a006520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088631819","display_name":"Reham Fatima","orcid":"https://orcid.org/0000-0002-9914-4893"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Reham Fatima","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060892537","display_name":"Stefano Giorgetti","orcid":"https://orcid.org/0000-0001-5424-9723"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stefano Giorgetti","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076318484","display_name":"Carlos Garc\u00eda Gir\u00f3n","orcid":"https://orcid.org/0000-0002-0935-7271"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Carlos\u00a0Garc\u0131a Giron","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101741653","display_name":"Jos\u00e9 M. Gonz\u00e1lez","orcid":"https://orcid.org/0000-0001-5569-0705"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jose\u00a0Manuel Gonzalez","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065408376","display_name":"Matthew P. Hardy","orcid":"https://orcid.org/0000-0001-6420-1715"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matthew Hardy","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057125598","display_name":"Peter W. Harrison","orcid":"https://orcid.org/0000-0002-4007-2899"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter\u00a0W Harrison","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040491901","display_name":"Thibaut Hourlier","orcid":"https://orcid.org/0000-0003-4894-7773"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thibaut Hourlier","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016852791","display_name":"Zoe Hollis","orcid":"https://orcid.org/0000-0002-4435-4666"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Zoe Hollis","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086022732","display_name":"Toby Hunt","orcid":"https://orcid.org/0000-0001-8377-0841"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Toby Hunt","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063971635","display_name":"Benjamin T. James","orcid":"https://orcid.org/0000-0002-6228-055X"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I126820664","display_name":"Vassar College","ror":"https://ror.org/022x6qg61","country_code":"US","type":"education","lineage":["https://openalex.org/I126820664"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin James","raw_affiliation_strings":["Broad Institute of MIT and Harvard , 415 Main Street , Cambridge , MA \u00a002142, USA","MIT Computer Science and Artificial Intelligence Laboratory , 32 Vassar St, Cambridge , MA \u00a002139, USA"],"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard , 415 Main Street , Cambridge , MA \u00a002142, USA","institution_ids":["https://openalex.org/I107606265"]},{"raw_affiliation_string":"MIT Computer Science and Artificial Intelligence Laboratory , 32 Vassar St, Cambridge , MA \u00a002139, USA","institution_ids":["https://openalex.org/I126820664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024472996","display_name":"Yunzhe Jiang","orcid":"https://orcid.org/0000-0001-8768-0050"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yunzhe Jiang","raw_affiliation_strings":["Program in Computational Biology and Bioinformatics, Yale University , New Haven , CT \u00a006520, USA"],"affiliations":[{"raw_affiliation_string":"Program in Computational Biology and Bioinformatics, Yale University , New Haven , CT \u00a006520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056810241","display_name":"Rory Johnson","orcid":"https://orcid.org/0000-0003-4607-2782"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I2801112126","display_name":"University Hospital of Bern","ror":"https://ror.org/01q9sj412","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2801112126"]}],"countries":["CH","IE"],"is_corresponding":false,"raw_author_name":"Rory Johnson","raw_affiliation_strings":["Department of Medical Oncology, Bern University Hospital , Murtenstrasse 35, 3008 Bern , Switzerland","School of Biology and Environmental Science, University College Dublin , Belfield, Dublin \u00a04, D04 V1W8, Ireland"],"affiliations":[{"raw_affiliation_string":"Department of Medical Oncology, Bern University Hospital , Murtenstrasse 35, 3008 Bern , Switzerland","institution_ids":["https://openalex.org/I2801112126"]},{"raw_affiliation_string":"School of Biology and Environmental Science, University College Dublin , Belfield, Dublin \u00a04, D04 V1W8, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028701985","display_name":"Mike Kay","orcid":"https://orcid.org/0000-0002-3282-0834"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mike Kay","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028646822","display_name":"Julien Lagarde","orcid":"https://orcid.org/0000-0002-0290-7445"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Julien Lagarde","raw_affiliation_strings":["Department of Bioinformatics and Genomics , Centre for Genomic Regulation (CRG) , The Barcelona Institute of Science andTechnology, Dr. Aiguader 88, Barcelona \u00a008003, Catalonia, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Genomics , Centre for Genomic Regulation (CRG) , The Barcelona Institute of Science andTechnology, Dr. Aiguader 88, Barcelona \u00a008003, Catalonia, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085030371","display_name":"Fergal J. Martin","orcid":"https://orcid.org/0000-0002-1672-050X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Fergal\u00a0J Martin","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049510467","display_name":"Laura Mart\u00ednez G\u00f3mez","orcid":"https://orcid.org/0000-0001-9843-1332"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Laura\u00a0Mart\u00ednez G\u00f3mez","raw_affiliation_strings":["Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO) , Calle Melchor Fernandez Almagro, 3, 28029 Madrid , Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO) , Calle Melchor Fernandez Almagro, 3, 28029 Madrid , Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035797460","display_name":"Surag Nair","orcid":"https://orcid.org/0000-0002-6216-2457"},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Surag Nair","raw_affiliation_strings":["Department of Computer Science, Stanford University , Palo Alto , CA , USA","Department of Genetics, Stanford University , Palo Alto , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University , Palo Alto , CA , USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Genetics, Stanford University , Palo Alto , CA , USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027704938","display_name":"Pengyu Ni","orcid":"https://orcid.org/0000-0001-9878-5480"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pengyu Ni","raw_affiliation_strings":["Department of Molecular Biophysics and Biochemistry, Yale University , New Haven , CT\u00a0 06520 , USA","Program in Computational Biology and Bioinformatics, Yale University , New Haven , CT \u00a006520, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University , New Haven , CT\u00a0 06520 , USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Program in Computational Biology and Bioinformatics, Yale University , New Haven , CT \u00a006520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090680921","display_name":"Fernando Campo del Pozo","orcid":"https://orcid.org/0000-0001-7688-6045"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Fernando Pozo","raw_affiliation_strings":["Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO) , Calle Melchor Fernandez Almagro, 3, 28029 Madrid , Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO) , Calle Melchor Fernandez Almagro, 3, 28029 Madrid , Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040494802","display_name":"Vivek Ramalingam","orcid":null},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vivek Ramalingam","raw_affiliation_strings":["Department of Computer Science, Stanford University , Palo Alto , CA , USA","Department of Genetics, Stanford University , Palo Alto , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University , Palo Alto , CA , USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Genetics, Stanford University , Palo Alto , CA , USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022206812","display_name":"Magali Ruffier","orcid":"https://orcid.org/0000-0002-8386-1580"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Magali Ruffier","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036865848","display_name":"Bianca M. Schmitt","orcid":"https://orcid.org/0000-0003-4341-2972"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bianca\u00a0M Schmitt","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081318122","display_name":"Jacob Schreiber","orcid":"https://orcid.org/0000-0003-4230-6625"},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacob\u00a0M Schreiber","raw_affiliation_strings":["Department of Computer Science, Stanford University , Palo Alto , CA , USA","Department of Genetics, Stanford University , Palo Alto , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University , Palo Alto , CA , USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Genetics, Stanford University , Palo Alto , CA , USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018778352","display_name":"Emily Steed","orcid":"https://orcid.org/0000-0003-4742-2860"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Emily Steed","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088192191","display_name":"Marie\u2010Marthe Suner","orcid":"https://orcid.org/0000-0002-0380-7171"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Marie-Marthe Suner","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071310614","display_name":"Dulika Sumathipala","orcid":"https://orcid.org/0000-0002-3206-5509"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Dulika Sumathipala","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033683921","display_name":"Irina Sycheva","orcid":"https://orcid.org/0000-0002-1931-4531"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Irina Sycheva","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064012145","display_name":"Barbara Uszczy\u0144ska-Ratajczak","orcid":"https://orcid.org/0000-0003-0150-3841"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Barbara Uszczynska-Ratajczak","raw_affiliation_strings":["Computational Biology of Noncoding RNA, Institute of Bioorganic Chemistry, Polish Academy of Sciences , Noskowskiego 12/14, 61-704 Poznan , Poland"],"affiliations":[{"raw_affiliation_string":"Computational Biology of Noncoding RNA, Institute of Bioorganic Chemistry, Polish Academy of Sciences , Noskowskiego 12/14, 61-704 Poznan , Poland","institution_ids":["https://openalex.org/I4210152414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078144936","display_name":"Elizabeth Wass","orcid":"https://orcid.org/0000-0002-8605-9921"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Elizabeth Wass","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012454723","display_name":"Yucheng Yang","orcid":"https://orcid.org/0000-0002-6873-5279"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I4210085920","display_name":"Shanghai Institute for Science of Science","ror":"https://ror.org/004srxn73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210085920"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Yucheng\u00a0T Yang","raw_affiliation_strings":["Department of Molecular Biophysics and Biochemistry, Yale University , New Haven , CT\u00a0 06520 , USA","Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University , Shanghai \u00a0200433, China"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University , New Haven , CT\u00a0 06520 , USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University , Shanghai \u00a0200433, China","institution_ids":["https://openalex.org/I4210164150","https://openalex.org/I4210085920","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062352940","display_name":"Andrew Yates","orcid":"https://orcid.org/0000-0002-8886-4772"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Yates","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039095916","display_name":"Zahoor Zafrulla","orcid":null},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zahoor Zafrulla","raw_affiliation_strings":["Department of Computer Science, Stanford University , Palo Alto , CA , USA","Department of Genetics, Stanford University , Palo Alto , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University , Palo Alto , CA , USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Genetics, Stanford University , Palo Alto , CA , USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017408001","display_name":"Jyoti S. Choudhary","orcid":"https://orcid.org/0000-0003-0881-5477"},"institutions":[{"id":"https://openalex.org/I142947616","display_name":"Institute of Cancer Research","ror":"https://ror.org/043jzw605","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I142947616"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jyoti\u00a0S Choudhary","raw_affiliation_strings":["Functional Proteomics, Division of Cancer Biology, Institute of Cancer Research , 237 Fulham Road , London \u00a0SW3 6JB, UK"],"affiliations":[{"raw_affiliation_string":"Functional Proteomics, Division of Cancer Biology, Institute of Cancer Research , 237 Fulham Road , London \u00a0SW3 6JB, UK","institution_ids":["https://openalex.org/I142947616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042321575","display_name":"Mark Gerstein","orcid":"https://orcid.org/0000-0002-9746-3719"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Gerstein","raw_affiliation_strings":["Department of Molecular Biophysics and Biochemistry, Yale University , New Haven , CT\u00a0 06520 , USA","Program in Computational Biology and Bioinformatics, Yale University , New Haven , CT \u00a006520, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University , New Haven , CT\u00a0 06520 , USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Program in Computational Biology and Bioinformatics, Yale University , New Haven , CT \u00a006520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067701434","display_name":"Roderic Guig\u00f3","orcid":"https://orcid.org/0000-0002-5738-4477"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Roderic Guigo","raw_affiliation_strings":["Departament de Ci\u00e8ncies Experimentals i de la Salut, Universitat Pompeu Fabra (UPF) , Barcelona , E-08003 Catalonia, Spain","Department of Bioinformatics and Genomics , Centre for Genomic Regulation (CRG) , The Barcelona Institute of Science andTechnology, Dr. Aiguader 88, Barcelona \u00a008003, Catalonia, Spain"],"affiliations":[{"raw_affiliation_string":"Departament de Ci\u00e8ncies Experimentals i de la Salut, Universitat Pompeu Fabra (UPF) , Barcelona , E-08003 Catalonia, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Department of Bioinformatics and Genomics , Centre for Genomic Regulation (CRG) , The Barcelona Institute of Science andTechnology, Dr. Aiguader 88, Barcelona \u00a008003, Catalonia, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007549481","display_name":"Tim Hubbard","orcid":"https://orcid.org/0000-0002-1767-9318"},"institutions":[{"id":"https://openalex.org/I1298207432","display_name":"Guy's Hospital","ror":"https://ror.org/04r33pf22","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1298207432","https://openalex.org/I200166805","https://openalex.org/I4210111135"]},{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tim J P Hubbard","raw_affiliation_strings":["Department of Medical and Molecular Genetics, King's College London, Guys Hospital , Great Maze Pond, London \u00a0SE1 9RT, UK"],"affiliations":[{"raw_affiliation_string":"Department of Medical and Molecular Genetics, King's College London, Guys Hospital , Great Maze Pond, London \u00a0SE1 9RT, UK","institution_ids":["https://openalex.org/I1298207432","https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089977648","display_name":"Manolis Kellis","orcid":"https://orcid.org/0000-0001-7113-9630"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I126820664","display_name":"Vassar College","ror":"https://ror.org/022x6qg61","country_code":"US","type":"education","lineage":["https://openalex.org/I126820664"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manolis Kellis","raw_affiliation_strings":["Broad Institute of MIT and Harvard , 415 Main Street , Cambridge , MA \u00a002142, USA","MIT Computer Science and Artificial Intelligence Laboratory , 32 Vassar St, Cambridge , MA \u00a002139, USA"],"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard , 415 Main Street , Cambridge , MA \u00a002142, USA","institution_ids":["https://openalex.org/I107606265"]},{"raw_affiliation_string":"MIT Computer Science and Artificial Intelligence Laboratory , 32 Vassar St, Cambridge , MA \u00a002139, USA","institution_ids":["https://openalex.org/I126820664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083952534","display_name":"Anshul Kundaje","orcid":"https://orcid.org/0000-0003-3084-2287"},"institutions":[{"id":"https://openalex.org/I1743320","display_name":"Palo Alto University","ror":"https://ror.org/04f812k67","country_code":"US","type":"education","lineage":["https://openalex.org/I1743320"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anshul Kundaje","raw_affiliation_strings":["Department of Computer Science, Stanford University , Palo Alto , CA , USA","Department of Genetics, Stanford University , Palo Alto , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University , Palo Alto , CA , USA","institution_ids":["https://openalex.org/I1743320","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Genetics, Stanford University , Palo Alto , CA , USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061203088","display_name":"Benedict Paten","orcid":"https://orcid.org/0000-0001-8863-3539"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benedict Paten","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California , Santa Cruz ,\u00a0CA\u00a095064, USA"],"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California , Santa Cruz ,\u00a0CA\u00a095064, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088945131","display_name":"Michael L. Tress","orcid":"https://orcid.org/0000-0001-9046-6370"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Michael\u00a0L Tress","raw_affiliation_strings":["Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO) , Calle Melchor Fernandez Almagro, 3, 28029 Madrid , Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO) , Calle Melchor Fernandez Almagro, 3, 28029 Madrid , Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006816272","display_name":"Paul Flicek","orcid":"https://orcid.org/0000-0002-3897-7955"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul Flicek","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute , Wellcome Genome Campus, Hinxton, Cambridge \u00a0CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":7,"institutions_distinct_count":62,"corresponding_author_ids":["https://openalex.org/A5030993950"],"corresponding_institution_ids":["https://openalex.org/I1303153112"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":42.8766,"has_fulltext":true,"cited_by_count":621,"citation_normalized_percentile":{"value":0.99929998,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"51","issue":"D1","first_page":"D942","last_page":"D949"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9464441537857056},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6900436878204346},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6239006519317627},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5103201270103455},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.4463667571544647},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.43978801369667053},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3823292553424835},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1814430058002472}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9464441537857056},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6900436878204346},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6239006519317627},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5103201270103455},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.4463667571544647},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43978801369667053},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3823292553424835},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1814430058002472}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkac1071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac1071","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D942/48440716/gkac1071.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:repositori.upf.edu:10230/55835","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/55835","pdf_url":"http://repositori.upf.edu/bitstream/10230/55835/1/Frankish_nar_genc.pdf","source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:bura.brunel.ac.uk:2438/26553","is_oa":true,"landing_page_url":"https://bura.brunel.ac.uk/handle/2438/26553","pdf_url":"http://bura.brunel.ac.uk/bitstream/2438/26553/1/FullText.pdf","source":{"id":"https://openalex.org/S4306401473","display_name":"Brunel University Research Archive (BURA) (Brunel University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59433898","host_organization_name":"Brunel University of London","host_organization_lineage":["https://openalex.org/I59433898"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9825462","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825462","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac1071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac1071","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D942/48440716/gkac1071.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5600000023841858,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1364174170","display_name":null,"funder_award_id":"HG004037","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1905050360","display_name":null,"funder_award_id":"HG007234","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3409642109","display_name":null,"funder_award_id":"U41HG007234","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4579721322","display_name":null,"funder_award_id":"WT222155/Z/20/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G5498360817","display_name":null,"funder_award_id":"222155/Z/20/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G7151991252","display_name":null,"funder_award_id":"BB/T01461X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G811080142","display_name":null,"funder_award_id":"R01HG004037","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4309908782.pdf","grobid_xml":"https://content.openalex.org/works/W4309908782.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1482244404","https://openalex.org/W2029919331","https://openalex.org/W2092170757","https://openalex.org/W2096465161","https://openalex.org/W2096791516","https://openalex.org/W2100203037","https://openalex.org/W2139658526","https://openalex.org/W2141165178","https://openalex.org/W2161811833","https://openalex.org/W2173732482","https://openalex.org/W2593488635","https://openalex.org/W2605409611","https://openalex.org/W2770026599","https://openalex.org/W2898598946","https://openalex.org/W2951972570","https://openalex.org/W2952306768","https://openalex.org/W2952370944","https://openalex.org/W3089350715","https://openalex.org/W3092226560","https://openalex.org/W3096568637","https://openalex.org/W3105951520","https://openalex.org/W3111061871","https://openalex.org/W3112376646","https://openalex.org/W3113162057","https://openalex.org/W3127556601","https://openalex.org/W3130819465","https://openalex.org/W3138762809","https://openalex.org/W3164601156","https://openalex.org/W3185201469","https://openalex.org/W3191132797","https://openalex.org/W3205324211","https://openalex.org/W3208459100","https://openalex.org/W3208691473","https://openalex.org/W3214315533","https://openalex.org/W4200135473","https://openalex.org/W4220999759","https://openalex.org/W4224014283","https://openalex.org/W4224278121","https://openalex.org/W4284992560","https://openalex.org/W4285084440","https://openalex.org/W4376133202","https://openalex.org/W4399437507","https://openalex.org/W6736518430"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W1969895229","https://openalex.org/W2108497208"],"abstract_inverted_index":{"Abstract":[0],"GENCODE":[1,16,35,111,151],"produces":[2],"high":[3],"quality":[4],"gene":[5],"and":[6,12,23,31,44,54,59,64,80,90,134,144,156,180],"transcript":[7,62,126],"annotation":[8,17,60,77,141,164,171],"for":[9,28],"the":[10,57,65,76,86,101,113,118,128,140,148,153,157,176],"human":[11,79,143,154],"mouse":[13,81,145],"genomes.":[14],"All":[15],"is":[18,172],"supported":[19],"by":[20,168],"experimental":[21,39],"data":[22,53,123],"serves":[24],"as":[25],"a":[26,104],"reference":[27],"genome":[29],"biology":[30],"clinical":[32],"genomics.":[33],"The":[34],"consortium":[36],"generates":[37],"targeted":[38],"data,":[40,88],"develops":[41],"bioinformatic":[42],"tools":[43,161],"carries":[45],"out":[46],"analyses":[47,89],"that,":[48],"along":[49],"with":[50,132],"externally":[51],"produced":[52],"methods,":[55],"support":[56,163],"identification":[58],"of":[61,67,78,103,106,120,142,150,159,165],"structures":[63],"determination":[66],"their":[68],"function.":[69],"Here,":[70],"we":[71,99],"present":[72],"an":[73],"update":[74],"on":[75],"genes,":[82,147],"including":[83],"developments":[84],"in":[85,110,130,139],"tools,":[87],"major":[91],"collaborations":[92,131],"which":[93],"underpin":[94],"this":[95],"progress.":[96],"For":[97],"example,":[98],"report":[100],"creation":[102],"set":[105],"non-canonical":[107],"ORFs":[108],"identified":[109],"transcripts,":[112],"LRGASP":[114],"collaboration":[115],"to":[116,124,136,162],"assess":[117],"use":[119],"long":[121],"transcriptomic":[122],"build":[125],"models,":[127],"progress":[129],"RefSeq":[133],"UniProt":[135],"increase":[137],"convergence":[138],"protein-coding":[146],"propagation":[149],"across":[152],"pan-genome":[155],"development":[158],"new":[160],"regulatory":[166],"features":[167],"GENCODE.":[169],"Our":[170],"accessible":[173],"via":[174],"Ensembl,":[175],"UCSC":[177],"Genome":[178],"Browser":[179],"https://www.gencodegenes.org.":[181]},"counts_by_year":[{"year":2026,"cited_by_count":59},{"year":2025,"cited_by_count":233},{"year":2024,"cited_by_count":171},{"year":2023,"cited_by_count":66},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":35},{"year":2020,"cited_by_count":27},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
