{"id":"https://openalex.org/W4310571900","doi":"https://doi.org/10.1093/nar/gkac1070","title":"MirDIP 5.2: tissue context annotation and novel microRNA curation","display_name":"MirDIP 5.2: tissue context annotation and novel microRNA curation","publication_year":2022,"publication_date":"2022-11-28","ids":{"openalex":"https://openalex.org/W4310571900","doi":"https://doi.org/10.1093/nar/gkac1070","pmid":"https://pubmed.ncbi.nlm.nih.gov/36453996"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac1070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac1070","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D217/48440729/gkac1070.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D217/48440729/gkac1070.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087041634","display_name":"Anne-Christin Hauschild","orcid":"https://orcid.org/0000-0002-7499-4373"},"institutions":[{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210116730"]},{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anne-Christin Hauschild","raw_affiliation_strings":["Department of Medical Informatics, University Medical Center G\u00f6ttingen, Georg-August University , G\u00f6ttingen, Lower Saxony\u00a0 37075 , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, University Medical Center G\u00f6ttingen, Georg-August University , G\u00f6ttingen, Lower Saxony\u00a0 37075 , Germany","institution_ids":["https://openalex.org/I74656192","https://openalex.org/I4210116730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085732287","display_name":"Chiara Pastrello","orcid":"https://orcid.org/0000-0002-1934-7472"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4210148922","display_name":"Arthritis Research Centre of Canada","ror":"https://ror.org/04ds5nc25","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210148922"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chiara Pastrello","raw_affiliation_strings":["Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada"],"raw_orcid":"https://orcid.org/0000-0002-1934-7472","affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I4210148922","https://openalex.org/I2800133710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098444168","display_name":"Gitta Kirana Anindya Ekaputeri","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210116730"]},{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gitta\u00a0Kirana\u00a0Anindya Ekaputeri","raw_affiliation_strings":["Department of Medical Informatics, University Medical Center G\u00f6ttingen, Georg-August University , G\u00f6ttingen, Lower Saxony\u00a0 37075 , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, University Medical Center G\u00f6ttingen, Georg-August University , G\u00f6ttingen, Lower Saxony\u00a0 37075 , Germany","institution_ids":["https://openalex.org/I74656192","https://openalex.org/I4210116730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026632753","display_name":"Dylan Bethune-Waddell","orcid":"https://orcid.org/0000-0002-7768-2367"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4210148922","display_name":"Arthritis Research Centre of Canada","ror":"https://ror.org/04ds5nc25","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210148922"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Dylan Bethune-Waddell","raw_affiliation_strings":["Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I4210148922","https://openalex.org/I2800133710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004328926","display_name":"Mark Abovsky","orcid":null},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4210148922","display_name":"Arthritis Research Centre of Canada","ror":"https://ror.org/04ds5nc25","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210148922"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mark Abovsky","raw_affiliation_strings":["Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I4210148922","https://openalex.org/I2800133710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006067108","display_name":"Zuhaib Ahmed","orcid":null},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4210148922","display_name":"Arthritis Research Centre of Canada","ror":"https://ror.org/04ds5nc25","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210148922"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Zuhaib Ahmed","raw_affiliation_strings":["Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I4210148922","https://openalex.org/I2800133710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038607647","display_name":"Max Kotlyar","orcid":"https://orcid.org/0000-0002-1111-8667"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4210148922","display_name":"Arthritis Research Centre of Canada","ror":"https://ror.org/04ds5nc25","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210148922"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Max Kotlyar","raw_affiliation_strings":["Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I4210148922","https://openalex.org/I2800133710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089244721","display_name":"Richard Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4210148922","display_name":"Arthritis Research Centre of Canada","ror":"https://ror.org/04ds5nc25","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210148922"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Richard Lu","raw_affiliation_strings":["Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I4210148922","https://openalex.org/I2800133710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055656807","display_name":"Igor Juri\u0161ica","orcid":"https://orcid.org/0000-0002-2507-946X"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I207624831","display_name":"Slovak Academy of Sciences","ror":"https://ror.org/03h7qq074","country_code":"SK","type":"government","lineage":["https://openalex.org/I207624831"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4210145572","display_name":"Institute of Neuroimmunology of the Slovak Academy of Sciences","ror":"https://ror.org/05c516317","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210145572"]},{"id":"https://openalex.org/I4210148922","display_name":"Arthritis Research Centre of Canada","ror":"https://ror.org/04ds5nc25","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210148922"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA","SK"],"is_corresponding":true,"raw_author_name":"Igor Jurisica","raw_affiliation_strings":["Departments of Medical Biophysics and Computer Science, and Faculty of Dentistry, University of Toronto , Toronto , ON, Canada","Institute of Neuroimmunology, Slovak Academy of Sciences , Bratislava , Slovakia","Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departments of Medical Biophysics and Computer Science, and Faculty of Dentistry, University of Toronto , Toronto , ON, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Institute of Neuroimmunology, Slovak Academy of Sciences , Bratislava , Slovakia","institution_ids":["https://openalex.org/I4210145572","https://openalex.org/I207624831"]},{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network , Toronto \u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I4210148922","https://openalex.org/I2800133710"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5055656807"],"corresponding_institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I185261750","https://openalex.org/I207624831","https://openalex.org/I2800133710","https://openalex.org/I4210145572","https://openalex.org/I4210148922","https://openalex.org/I4388446386"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.1234,"has_fulltext":false,"cited_by_count":64,"citation_normalized_percentile":{"value":0.96982027,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"51","issue":"D1","first_page":"D217","last_page":"D225"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7919954061508179},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7343108057975769},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.6504843831062317},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5940932035446167},{"id":"https://openalex.org/keywords/mirbase","display_name":"MiRBase","score":0.5766372084617615},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5656811594963074},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.537588357925415},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4961586892604828},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.41591694951057434},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3588376045227051},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3071386218070984},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.27501922845840454},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.25232556462287903},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2204766571521759},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.08802750706672668}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7919954061508179},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7343108057975769},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.6504843831062317},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5940932035446167},{"id":"https://openalex.org/C49305753","wikidata":"https://www.wikidata.org/wiki/Q6826947","display_name":"MiRBase","level":4,"score":0.5766372084617615},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5656811594963074},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.537588357925415},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4961586892604828},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.41591694951057434},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3588376045227051},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3071386218070984},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.27501922845840454},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.25232556462287903},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2204766571521759},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.08802750706672668},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkac1070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac1070","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D217/48440729/gkac1070.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36453996","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36453996","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825511","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825511","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/119206","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gro-2/119206","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac1070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac1070","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D217/48440729/gkac1070.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G4029805389","display_name":null,"funder_award_id":"225404","funder_id":"https://openalex.org/F4320319952","funder_display_name":"Canada Foundation for Innovation"},{"id":"https://openalex.org/G8297743590","display_name":null,"funder_award_id":"33536","funder_id":"https://openalex.org/F4320319952","funder_display_name":"Canada Foundation for Innovation"}],"funders":[{"id":"https://openalex.org/F4320313552","display_name":"Toronto General and Western Hospital Foundation","ror":"https://ror.org/00tfsm290"},{"id":"https://openalex.org/F4320319952","display_name":"Canada Foundation for Innovation","ror":"https://ror.org/000az4664"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W122736534","https://openalex.org/W1744683414","https://openalex.org/W1971793464","https://openalex.org/W1996549514","https://openalex.org/W2010461414","https://openalex.org/W2022326327","https://openalex.org/W2026697437","https://openalex.org/W2032861672","https://openalex.org/W2040191060","https://openalex.org/W2044763721","https://openalex.org/W2096006617","https://openalex.org/W2116034137","https://openalex.org/W2149785901","https://openalex.org/W2154085311","https://openalex.org/W2158135353","https://openalex.org/W2174734928","https://openalex.org/W2185215643","https://openalex.org/W2320983896","https://openalex.org/W2404810405","https://openalex.org/W2521965185","https://openalex.org/W2575293459","https://openalex.org/W2725073276","https://openalex.org/W2757262038","https://openalex.org/W2768781242","https://openalex.org/W2810144884","https://openalex.org/W2886514991","https://openalex.org/W2898440040","https://openalex.org/W2899942534","https://openalex.org/W2910755031","https://openalex.org/W2952528394","https://openalex.org/W2971017846","https://openalex.org/W2979975313","https://openalex.org/W2981521201","https://openalex.org/W2984302209","https://openalex.org/W3012746893","https://openalex.org/W3045647287","https://openalex.org/W3080961029","https://openalex.org/W3096568637","https://openalex.org/W3113011624","https://openalex.org/W3137546213","https://openalex.org/W3150954917","https://openalex.org/W3185042382","https://openalex.org/W3214608846","https://openalex.org/W4246271082","https://openalex.org/W4250090323","https://openalex.org/W4255156463","https://openalex.org/W6657292994","https://openalex.org/W6713748237","https://openalex.org/W6770259774","https://openalex.org/W6836575638"],"related_works":["https://openalex.org/W2898440040","https://openalex.org/W2112192177","https://openalex.org/W2380269512","https://openalex.org/W2009658305","https://openalex.org/W2077327925","https://openalex.org/W2109923675","https://openalex.org/W4210596122","https://openalex.org/W2007159807","https://openalex.org/W2312637459","https://openalex.org/W2321938318"],"abstract_inverted_index":{"MirDIP":[0],"is":[1,205],"a":[2,43,180,193],"well-established":[3],"database":[4,76,172],"that":[5],"aggregates":[6],"microRNA-gene":[7,123],"human":[8],"interactions":[9,79],"from":[10,82,93,134],"multiple":[11],"databases":[12],"to":[13,27,77,96,169,187,196,199],"increase":[14],"coverage,":[15],"reduce":[16],"bias,":[17],"and":[18,47,54,69,87,112,122,127,130,137,143,152,176],"improve":[19],"usability":[20,162],"by":[21,116,165],"providing":[22],"an":[23],"integrated":[24,88,178,201],"score":[25],"proportional":[26],"the":[28,31,74,98,110,161,167,171],"probability":[29],"of":[30,100,114,163],"interaction":[32],"occurring.":[33],"In":[34,56,104],"version":[35],"5.2,":[36],"we":[37,85,107,159,177],"removed":[38],"eight":[39],"outdated":[40],"resources,":[41],"added":[42],"new":[44],"resource":[45],"(miRNATIP),":[46],"ran":[48],"five":[49],"prediction":[50],"algorithms":[51],"for":[52,65,146,183],"miRBase":[53],"mirGeneDB.":[55,83],"total,":[57],"mirDIP":[58,115,164,194,204],"5.2":[59],"includes":[60],"46":[61],"364":[62],"047":[63],"predictions":[64],"27":[66,149],"936":[67],"genes":[68,151],"2734":[70],"microRNAs,":[71,120,148],"making":[72],"it":[73],"first":[75],"provide":[78,192],"using":[80,173],"data":[81,133],"Moreover,":[84],"curated":[86],"32":[89],"497":[90],"novel":[91,102],"microRNAs":[92],"14":[94],"publications":[95],"accelerate":[97],"use":[99],"these":[101],"data.":[103],"this":[105],"release,":[106],"also":[108,191],"extend":[109],"content":[111],"functionality":[113],"associating":[117],"contexts":[118,145],"with":[119],"genes,":[121],"interactions.":[124,157],"We":[125,190],"collected":[126],"processed":[128],"microRNA":[129],"gene":[131],"expression":[132],"20":[135],"resources":[136],"acquired":[138],"information":[139],"on":[140],"330":[141],"tissue":[142],"disease":[144],"2657":[147],"576":[150],"123":[153],"651":[154],"910":[155],"gene-microRNA-tissue":[156],"Finally,":[158],"improved":[160],"enabling":[166],"user":[168],"search":[170],"precursor":[174],"IDs,":[175],"miRAnno,":[179],"network-based":[181],"tool":[182],"identifying":[184],"pathways":[185],"linked":[186],"specific":[188],"microRNAs.":[189],"API":[195],"facilitate":[197],"access":[198],"its":[200],"predictions.":[202],"Updated":[203],"available":[206],"at":[207],"https://ophid.utoronto.ca/mirDIP.":[208]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":8}],"updated_date":"2026-07-11T18:08:03.149640","created_date":"2025-10-10T00:00:00"}
