{"id":"https://openalex.org/W4309305993","doi":"https://doi.org/10.1093/nar/gkac1037","title":"IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata","display_name":"IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata","publication_year":2022,"publication_date":"2022-11-18","ids":{"openalex":"https://openalex.org/W4309305993","doi":"https://doi.org/10.1093/nar/gkac1037","pmid":"https://pubmed.ncbi.nlm.nih.gov/36399502"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac1037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac1037","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkac1037","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051530741","display_name":"Ant\u00f4nio Pedro Camargo","orcid":"https://orcid.org/0000-0003-3913-2484"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Antonio Pedro Camargo","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":"https://orcid.org/0000-0003-3913-2484","affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056935885","display_name":"Stephen Nayfach","orcid":"https://orcid.org/0000-0003-4625-4164"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Nayfach","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050011808","display_name":"I-Min A. Chen","orcid":"https://orcid.org/0000-0003-2026-9798"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"I-Min A Chen","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":"https://orcid.org/0000-0003-2026-9798","affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038974860","display_name":"Krishna Palaniappan","orcid":"https://orcid.org/0000-0003-4484-7505"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Krishnaveni Palaniappan","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075093246","display_name":"Anna Ratner","orcid":"https://orcid.org/0000-0001-8877-2002"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna Ratner","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040496456","display_name":"Ken Chu","orcid":"https://orcid.org/0000-0002-9602-1433"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ken Chu","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003296344","display_name":"Stephan Ritter","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephan\u00a0J Ritter","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050966078","display_name":"T. B. K. Reddy","orcid":"https://orcid.org/0000-0002-0871-5567"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T B K Reddy","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":"https://orcid.org/0000-0002-0871-5567","affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032834043","display_name":"Supratim Mukherjee","orcid":"https://orcid.org/0000-0002-6322-2271"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Supratim Mukherjee","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":"https://orcid.org/0000-0002-6322-2271","affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064963970","display_name":"Frederik Schulz","orcid":"https://orcid.org/0000-0002-4932-4677"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Frederik Schulz","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003209851","display_name":"Lee Call","orcid":"https://orcid.org/0000-0002-2857-1337"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lee Call","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064104059","display_name":"Russell Y. Neches","orcid":"https://orcid.org/0000-0002-2055-8381"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell\u00a0Y Neches","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006298901","display_name":"Tanja Woyke","orcid":"https://orcid.org/0000-0002-9485-5637"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tanja Woyke","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085966412","display_name":"Natalia Ivanova","orcid":"https://orcid.org/0000-0002-5802-9485"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalia\u00a0N Ivanova","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058414477","display_name":"Emiley A. Eloe\u2010Fadrosh","orcid":"https://orcid.org/0000-0002-8162-1276"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emiley\u00a0A Eloe-Fadrosh","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":"https://orcid.org/0000-0002-8162-1276","affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023696415","display_name":"Nikos C. Kyrpides","orcid":"https://orcid.org/0000-0002-6131-0462"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikos\u00a0C Kyrpides","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013600763","display_name":"Simon Roux","orcid":"https://orcid.org/0000-0002-5831-5895"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Simon Roux","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA"],"raw_orcid":"https://orcid.org/0000-0002-5831-5895","affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory , Berkeley , CA 94720 , USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":17,"corresponding_author_ids":["https://openalex.org/A5013600763"],"corresponding_institution_ids":["https://openalex.org/I148283060","https://openalex.org/I196679689"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":65.8875,"has_fulltext":true,"cited_by_count":442,"citation_normalized_percentile":{"value":0.99982281,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"51","issue":"D1","first_page":"D733","last_page":"D743"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8119439482688904},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7784234285354614},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7484036684036255},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5223920345306396},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5169838666915894},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4766676723957062},{"id":"https://openalex.org/keywords/human-virome","display_name":"Human virome","score":0.45586422085762024},{"id":"https://openalex.org/keywords/img","display_name":"IMG","score":0.4144768714904785},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.34203392267227173},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2618406414985657},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15709340572357178},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.12343990802764893},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.09451103210449219}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8119439482688904},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7784234285354614},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7484036684036255},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5223920345306396},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5169838666915894},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4766676723957062},{"id":"https://openalex.org/C190743605","wikidata":"https://www.wikidata.org/wiki/Q17027885","display_name":"Human virome","level":4,"score":0.45586422085762024},{"id":"https://openalex.org/C126249665","wikidata":"https://www.wikidata.org/wiki/Q3146723","display_name":"IMG","level":2,"score":0.4144768714904785},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.34203392267227173},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2618406414985657},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15709340572357178},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.12343990802764893},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.09451103210449219},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkac1037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac1037","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36399502","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36399502","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825611","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825611","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt6n06r0hp","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/6n06r0hp","pdf_url":"https://escholarship.org/content/qt6n06r0hp/qt6n06r0hp.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, vol 51, iss D1","raw_type":"article"},{"id":"pmh:oai:osti.gov:1987510","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1987510","pdf_url":"https://www.osti.gov/servlets/purl/1987510","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:ark:/13030/qt6n06r0hp","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1093/nar/gkac1037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac1037","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5602503670","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7205239661","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1630717967","https://openalex.org/W2029926937","https://openalex.org/W2127391962","https://openalex.org/W2134023754","https://openalex.org/W2173732482","https://openalex.org/W2514983714","https://openalex.org/W2543855063","https://openalex.org/W2588299914","https://openalex.org/W2605606775","https://openalex.org/W2740966378","https://openalex.org/W2763547223","https://openalex.org/W2765313377","https://openalex.org/W2897249806","https://openalex.org/W2900402284","https://openalex.org/W2904384071","https://openalex.org/W2910615673","https://openalex.org/W2934099045","https://openalex.org/W2950954328","https://openalex.org/W2963011827","https://openalex.org/W3002419408","https://openalex.org/W3010256223","https://openalex.org/W3042305844","https://openalex.org/W3096951695","https://openalex.org/W3097008984","https://openalex.org/W3097021932","https://openalex.org/W3104596207","https://openalex.org/W3106188259","https://openalex.org/W3111496797","https://openalex.org/W3118048495","https://openalex.org/W3132890345","https://openalex.org/W3152807587","https://openalex.org/W3165236468","https://openalex.org/W3165329360","https://openalex.org/W3176037658","https://openalex.org/W3197045863","https://openalex.org/W3200103613","https://openalex.org/W3215102050","https://openalex.org/W4205954540","https://openalex.org/W4211107894","https://openalex.org/W4220856598","https://openalex.org/W4221049439","https://openalex.org/W4224078476","https://openalex.org/W4226450298","https://openalex.org/W4297496650","https://openalex.org/W4304481015","https://openalex.org/W4381547687","https://openalex.org/W6839969971"],"related_works":["https://openalex.org/W4297154044","https://openalex.org/W3213058918","https://openalex.org/W2519363532","https://openalex.org/W3182597671","https://openalex.org/W4220807255","https://openalex.org/W3216950677","https://openalex.org/W4293040420","https://openalex.org/W2254157384","https://openalex.org/W2289294330","https://openalex.org/W3133222449"],"abstract_inverted_index":{"Viruses":[0],"are":[1,127,146,176],"widely":[2],"recognized":[3],"as":[4],"critical":[5],"members":[6],"of":[7,14,24,32,47,84,87],"all":[8],"microbiomes.":[9],"Metagenomics":[10],"enables":[11,63],"large-scale":[12],"exploration":[13],"the":[15,20,30,44,81,102,157,173],"global":[16],"virosphere,":[17],"progressively":[18],"revealing":[19],"extensive":[21],"genomic":[22],"diversity":[23],"viruses":[25,36,70],"on":[26,72],"Earth":[27],"and":[28,57,68,92,134,142,161,172],"highlighting":[29],"myriad":[31],"ways":[33],"by":[34],"which":[35],"impact":[37],"biological":[38],"processes.":[39],"IMG/VR":[40,126,166],"provides":[41],"access":[42],"to":[43,65,101,178],"largest":[45],"collection":[46],"viral":[48,110],"sequences":[49,124],"obtained":[50],"from":[51,131],"(meta)genomes,":[52],"along":[53],"with":[54,117,148],"functional":[55],"annotation":[56,145],"rich":[58],"metadata.":[59],"A":[60],"web":[61],"interface":[62],"users":[64],"efficiently":[66],"browse":[67],"search":[69],"based":[71],"genome":[73,93,149],"features":[74],"and/or":[75],"sequence":[76],"similarity.":[77],"Here,":[78],"we":[79],"present":[80],"fourth":[82],"version":[83],"IMG/VR,":[85],"composed":[86],">15":[88],"million":[89,109],"virus":[90],"genomes":[91],"fragments,":[94],"a":[95,137],"\u22486-fold":[96],"increase":[97],"in":[98,125],"size":[99],"compared":[100],"previous":[103],"version.":[104],"These":[105],"clustered":[106],"into":[107],"8.7":[108],"operational":[111],"taxonomic":[112,154,159],"units,":[113],"including":[114],"231":[115],"408":[116],"at":[118,170,180],"least":[119],"one":[120],"high-quality":[121],"representative.":[122],"Viral":[123],"now":[128],"systematically":[129],"identified":[130],"genomes,":[132],"metagenomes,":[133],"metatranscriptomes":[135],"using":[136,152],"new":[138],"detection":[139],"approach":[140],"(geNomad),":[141],"IMG":[143],"standard":[144],"complemented":[147],"quality":[150],"estimation":[151],"CheckV,":[153],"classification":[155],"reflecting":[156],"latest":[158],"standards,":[160],"microbial":[162],"host":[163],"taxonomy":[164],"prediction.":[165],"v4":[167],"is":[168],"available":[169,177],"https://img.jgi.doe.gov/vr,":[171],"underlying":[174],"data":[175],"download":[179],"https://genome.jgi.doe.gov/portal/IMG_VR.":[181]},"counts_by_year":[{"year":2026,"cited_by_count":55},{"year":2025,"cited_by_count":175},{"year":2024,"cited_by_count":136},{"year":2023,"cited_by_count":73},{"year":2022,"cited_by_count":3}],"updated_date":"2026-05-12T08:28:47.272897","created_date":"2025-10-10T00:00:00"}