{"id":"https://openalex.org/W4309306365","doi":"https://doi.org/10.1093/nar/gkac1006","title":"TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization","display_name":"TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualization","publication_year":2022,"publication_date":"2022-11-18","ids":{"openalex":"https://openalex.org/W4309306365","doi":"https://doi.org/10.1093/nar/gkac1006","pmid":"https://pubmed.ncbi.nlm.nih.gov/36399488"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac1006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac1006","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1417/48441472/gkac1006.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1417/48441472/gkac1006.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100425326","display_name":"Xueying Wang","orcid":"https://orcid.org/0000-0001-8979-3737"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]},{"id":"https://openalex.org/I4210105229","display_name":"City University of Hong Kong, Shenzhen Research Institute","ror":"https://ror.org/00xc0ma20","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210105229"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Xueying Wang","raw_affiliation_strings":["City University of Hong Kong Shenzhen Research Institute , Guangdong, China","Department of Computer Science, City University of Hong Kong , Hong Kong, China"],"raw_orcid":"https://orcid.org/0000-0001-8979-3737","affiliations":[{"raw_affiliation_string":"City University of Hong Kong Shenzhen Research Institute , Guangdong, China","institution_ids":["https://openalex.org/I168719708","https://openalex.org/I4210105229"]},{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong , Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008410093","display_name":"Lingxi Chen","orcid":"https://orcid.org/0000-0002-5229-7470"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]},{"id":"https://openalex.org/I4210105229","display_name":"City University of Hong Kong, Shenzhen Research Institute","ror":"https://ror.org/00xc0ma20","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210105229"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Lingxi Chen","raw_affiliation_strings":["City University of Hong Kong Shenzhen Research Institute , Guangdong, China","Department of Computer Science, City University of Hong Kong , Hong Kong, China"],"raw_orcid":"https://orcid.org/0000-0002-5229-7470","affiliations":[{"raw_affiliation_string":"City University of Hong Kong Shenzhen Research Institute , Guangdong, China","institution_ids":["https://openalex.org/I168719708","https://openalex.org/I4210105229"]},{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong , Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100431723","display_name":"Wei Liu","orcid":"https://orcid.org/0000-0002-0236-7071"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Wei Liu","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong , Hong Kong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong , Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033878284","display_name":"Yuanzheng Zhang","orcid":"https://orcid.org/0000-0002-7584-5695"},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanzheng Zhang","raw_affiliation_strings":["School of Medicine and Biological Information Engineering, Northeastern University , Shenyang, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine and Biological Information Engineering, Northeastern University , Shenyang, Liaoning, China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101643688","display_name":"Dawei Liu","orcid":"https://orcid.org/0000-0001-7084-2287"},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dawei Liu","raw_affiliation_strings":["School of Software, Northeastern University , Shenyang, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Northeastern University , Shenyang, Liaoning, China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059865714","display_name":"Chenxin Zhou","orcid":"https://orcid.org/0000-0002-8163-7665"},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenxin Zhou","raw_affiliation_strings":["School of Business Administration, Northeastern University , Shenyang, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Business Administration, Northeastern University , Shenyang, Liaoning, China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028472046","display_name":"Shuai Shi","orcid":"https://orcid.org/0000-0002-7644-4148"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Shuai Shi","raw_affiliation_strings":["School of Creative Media, City University of Hong Kong , Hong Kong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Creative Media, City University of Hong Kong , Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080475678","display_name":"Jiajie Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Jiajie Dong","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong , Hong Kong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong , Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080473959","display_name":"Zhengtao Lai","orcid":null},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengtao Lai","raw_affiliation_strings":["School of Business Administration, Northeastern University , Shenyang, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Business Administration, Northeastern University , Shenyang, Liaoning, China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101859231","display_name":"Bingran Zhao","orcid":"https://orcid.org/0000-0002-2070-5695"},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bingran Zhao","raw_affiliation_strings":["School of Business Administration, Northeastern University , Shenyang, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Business Administration, Northeastern University , Shenyang, Liaoning, China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090140430","display_name":"Wenjingyu Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjingyu Zhang","raw_affiliation_strings":["School of Business Administration, Northeastern University , Shenyang, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Business Administration, Northeastern University , Shenyang, Liaoning, China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041938275","display_name":"Haoyue Cheng","orcid":"https://orcid.org/0000-0002-3538-0678"},"institutions":[{"id":"https://openalex.org/I183519381","display_name":"Capital Medical University","ror":"https://ror.org/013xs5b60","country_code":"CN","type":"education","lineage":["https://openalex.org/I183519381"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoyue Cheng","raw_affiliation_strings":["Department of Clinical Pathology, Capital Medical University , Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Pathology, Capital Medical University , Beijing, China","institution_ids":["https://openalex.org/I183519381"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083428910","display_name":"Shuai Cheng Li","orcid":"https://orcid.org/0000-0001-6246-6349"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]},{"id":"https://openalex.org/I4210105229","display_name":"City University of Hong Kong, Shenzhen Research Institute","ror":"https://ror.org/00xc0ma20","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210105229"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Shuaicheng Li","raw_affiliation_strings":["City University of Hong Kong Shenzhen Research Institute , Guangdong, China","Department of Computer Science, City University of Hong Kong , Hong Kong, China"],"raw_orcid":"https://orcid.org/0000-0001-6246-6349","affiliations":[{"raw_affiliation_string":"City University of Hong Kong Shenzhen Research Institute , Guangdong, China","institution_ids":["https://openalex.org/I168719708","https://openalex.org/I4210105229"]},{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong , Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5100425326"],"corresponding_institution_ids":["https://openalex.org/I168719708","https://openalex.org/I4210105229"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.5121,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.90464836,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"51","issue":"D1","first_page":"D1417","last_page":"D1424"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5955566167831421},{"id":"https://openalex.org/keywords/tumor-microenvironment","display_name":"Tumor microenvironment","score":0.5588793158531189},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5201038122177124},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4711408019065857},{"id":"https://openalex.org/keywords/cell-type","display_name":"Cell type","score":0.43527480959892273},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.43131938576698303},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4099638760089874},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.3835206627845764},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3493443727493286},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3273603916168213},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.19431287050247192},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12925228476524353},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09979596734046936}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5955566167831421},{"id":"https://openalex.org/C2776107976","wikidata":"https://www.wikidata.org/wiki/Q1786433","display_name":"Tumor microenvironment","level":3,"score":0.5588793158531189},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5201038122177124},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4711408019065857},{"id":"https://openalex.org/C189014844","wikidata":"https://www.wikidata.org/wiki/Q189118","display_name":"Cell type","level":3,"score":0.43527480959892273},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.43131938576698303},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4099638760089874},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.3835206627845764},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3493443727493286},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3273603916168213},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.19431287050247192},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12925228476524353},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09979596734046936}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkac1006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac1006","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1417/48441472/gkac1006.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36399488","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36399488","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825442","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825442","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/6143bbf4-29e9-41a5-b89a-43858e5f93f1","is_oa":true,"landing_page_url":"https://hdl.handle.net/2031/6143bbf4-29e9-41a5-b89a-43858e5f93f1","pdf_url":null,"source":{"id":"https://openalex.org/S7407055387","display_name":"CityU Scholars","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wang, X, Chen, L, Liu, W, Zhang, Y, Liu, D, Zhou, C, Shi, S, Dong, J, Lai, Z, Zhao, B, Zhang, W, Cheng, H & Li, S 2023, 'TIMEDB : tumor immune micro-environment cell composition database with automatic analysis and interactive visualization', Nucleic acids research, vol. 51, no. D1, pp. D1417\u2013D1424. https://doi.org/10.1093/nar/gkac1006","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac1006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac1006","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1417/48441472/gkac1006.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.47999998927116394,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309893","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4309306365.pdf","grobid_xml":"https://content.openalex.org/works/W4309306365.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1881296535","https://openalex.org/W1966107523","https://openalex.org/W1985987855","https://openalex.org/W2020541351","https://openalex.org/W2059409197","https://openalex.org/W2123696077","https://openalex.org/W2133111499","https://openalex.org/W2143129697","https://openalex.org/W2169353806","https://openalex.org/W2230320310","https://openalex.org/W2290344215","https://openalex.org/W2533508881","https://openalex.org/W2567668099","https://openalex.org/W2574604975","https://openalex.org/W2600132724","https://openalex.org/W2765224588","https://openalex.org/W2796207838","https://openalex.org/W2902652978","https://openalex.org/W2911922390","https://openalex.org/W2937441321","https://openalex.org/W2942610007","https://openalex.org/W2945415170","https://openalex.org/W2947554843","https://openalex.org/W2949273159","https://openalex.org/W2952001873","https://openalex.org/W2952406594","https://openalex.org/W2953757801","https://openalex.org/W2981545603","https://openalex.org/W2999626196","https://openalex.org/W3000312613","https://openalex.org/W3005889306","https://openalex.org/W3021942134","https://openalex.org/W3022344729","https://openalex.org/W3025322808","https://openalex.org/W3027286012","https://openalex.org/W3080817847","https://openalex.org/W3165484362","https://openalex.org/W3199581421","https://openalex.org/W3207172363","https://openalex.org/W4297340531"],"related_works":["https://openalex.org/W4307993920","https://openalex.org/W1898241694","https://openalex.org/W2036616013","https://openalex.org/W3157307916","https://openalex.org/W2141091415","https://openalex.org/W2895456557","https://openalex.org/W2101753987","https://openalex.org/W4386916799","https://openalex.org/W4231341600","https://openalex.org/W3157103618"],"abstract_inverted_index":{"Deciphering":[0],"the":[1,5,13,20,66,70,99,150,184,192],"cell-type":[2,59,94,133,146],"composition":[3,60,95,134,147],"in":[4,40,44,86,109],"tumor":[6,130,194],"immune":[7,131],"microenvironment":[8,132],"(TIME)":[9],"can":[10,57,80],"significantly":[11],"increase":[12],"efficacy":[14],"of":[15,22,68,74,92,154,157],"cancer":[16,41,77,165],"treatment":[17],"and":[18,31,72,115,149,177,180],"improve":[19],"prognosis":[21],"cancer.":[23],"Such":[24],"a":[25,89,155,187],"task":[26],"has":[27],"benefited":[28],"from":[29,61,83,136,160],"microarrays":[30],"RNA":[32],"sequencing":[33],"technologies,":[34],"which":[35],"have":[36],"been":[37],"widely":[38],"adopted":[39],"studies,":[42],"resulting":[43],"extensive":[45],"expression":[46,63,138,144],"profiles":[47],"with":[48,88,171],"clinical":[49,101,152],"phenotypes":[50],"across":[51,76,163],"multiple":[52],"cancers.":[53],"Current":[54],"state-of-the-art":[55],"tools":[56,85,173],"infer":[58],"bulk":[62,137],"profiles,":[64,145,148],"providing":[65],"possibility":[67],"investigating":[69,191],"inter-heterogeneity":[71],"intra-heterogeneity":[73],"TIME":[75,93],"types.":[78,166],"Much":[79],"be":[81],"gained":[82],"these":[84],"conjunction":[87],"well-curated":[90],"database":[91,127],"data,":[96],"accompanied":[97],"by":[98],"corresponding":[100,151],"information.":[102],"However,":[103],"currently":[104],"available":[105],"databases":[106],"fall":[107],"short":[108],"data":[110],"volume,":[111],"multi-platform":[112],"dataset":[113],"integration,":[114],"tool":[116,189],"integration.":[117],"In":[118],"this":[119],"work,":[120],"we":[121],"introduce":[122],"TIMEDB":[123,140,167],"(https://timedb.deepomics.org),":[124],"an":[125],"online":[126,172],"for":[128,174,190],"human":[129,193],"estimated":[135],"profiles.":[139],"stores":[141],"manually":[142],"curated":[143],"information":[153],"total":[156],"39,706":[158],"samples":[159],"546":[161],"datasets":[162],"43":[164],"comes":[168],"readily":[169],"equipped":[170],"automatic":[175],"analysis":[176],"interactive":[178],"visualization,":[179],"aims":[181],"to":[182],"serve":[183],"community":[185],"as":[186],"convenient":[188],"microenvironment.":[195]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":4},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
