{"id":"https://openalex.org/W3212334377","doi":"https://doi.org/10.1093/nar/gkab996","title":"ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments","display_name":"ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments","publication_year":2021,"publication_date":"2021-10-13","ids":{"openalex":"https://openalex.org/W3212334377","doi":"https://doi.org/10.1093/nar/gkab996","mag":"3212334377","pmid":"https://pubmed.ncbi.nlm.nih.gov/34751401"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab996","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab996","pdf_url":"https://academic.oup.com/nar/article-pdf/50/D1/D316/42058627/gkab996.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/50/D1/D316/42058627/gkab996.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073427553","display_name":"Fayrouz Hammal","orcid":"https://orcid.org/0000-0002-7612-4953"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fayrouz Hammal","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"raw_orcid":"https://orcid.org/0000-0002-7612-4953","affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061051492","display_name":"Pierre de Langen","orcid":"https://orcid.org/0000-0001-6119-2438"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre de\u00a0Langen","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"raw_orcid":"https://orcid.org/0000-0001-6119-2438","affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075787276","display_name":"Aur\u00e9lie Bergon","orcid":"https://orcid.org/0000-0003-1518-4562"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Aur\u00e9lie Bergon","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"raw_orcid":"https://orcid.org/0000-0003-1518-4562","affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088269508","display_name":"Fabrice Lopez","orcid":"https://orcid.org/0000-0002-2401-0292"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fabrice Lopez","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"raw_orcid":"https://orcid.org/0000-0002-2401-0292","affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061967401","display_name":"Beno\u00eet Ballester","orcid":"https://orcid.org/0000-0002-0834-7135"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Benoit Ballester","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"raw_orcid":"https://orcid.org/0000-0002-0834-7135","affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5061967401"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3264,"currency":"EUR","value_usd":3520},"fwci":28.7298,"has_fulltext":true,"cited_by_count":506,"citation_normalized_percentile":{"value":0.99867099,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"50","issue":"D1","first_page":"D316","last_page":"D325"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9542684555053711},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.743148148059845},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.6295050382614136},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.6136770844459534},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5280519127845764},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5041438341140747},{"id":"https://openalex.org/keywords/drosophila","display_name":"Drosophila (subgenus)","score":0.49813270568847656},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4206590950489044},{"id":"https://openalex.org/keywords/regulatory-sequence","display_name":"Regulatory sequence","score":0.41823530197143555},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.30257803201675415},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.09240129590034485}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9542684555053711},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.743148148059845},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.6295050382614136},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.6136770844459534},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5280519127845764},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5041438341140747},{"id":"https://openalex.org/C2776041557","wikidata":"https://www.wikidata.org/wiki/Q3715451","display_name":"Drosophila (subgenus)","level":3,"score":0.49813270568847656},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4206590950489044},{"id":"https://openalex.org/C21592294","wikidata":"https://www.wikidata.org/wiki/Q3238407","display_name":"Regulatory sequence","level":4,"score":0.41823530197143555},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.30257803201675415},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.09240129590034485}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkab996","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab996","pdf_url":"https://academic.oup.com/nar/article-pdf/50/D1/D316/42058627/gkab996.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:34751401","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34751401","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:hal-03433360v1","is_oa":false,"landing_page_url":"https://amu.hal.science/hal-03433360","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2022, ⟨10.1093/nar/gkab996⟩","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8728178","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8728178","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab996","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab996","pdf_url":"https://academic.oup.com/nar/article-pdf/50/D1/D316/42058627/gkab996.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1621871713","display_name":null,"funder_award_id":"AMX\u201019\u2010IET\u2010007","funder_id":"https://openalex.org/F4320309911","funder_display_name":"Aix-Marseille Universit\u00e9"},{"id":"https://openalex.org/G421389489","display_name":null,"funder_award_id":"ANR-10-EQPX- 29-01","funder_id":"https://openalex.org/F4320309911","funder_display_name":"Aix-Marseille Universit\u00e9"},{"id":"https://openalex.org/G5043543010","display_name":null,"funder_award_id":"10-EQPX-29-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6641938136","display_name":"Equipement d'excellence de calcul intensif de Mesocentres coordonn\u00e9s - Tremplin vers le calcul petaflopique et l'exascale","funder_award_id":"ANR-10-EQPX-0029","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G676769616","display_name":null,"funder_award_id":"ANR-10-EQPX-29-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8510727784","display_name":null,"funder_award_id":"ANR-10-EQPX","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320309911","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"},{"id":"https://openalex.org/F4320322727","display_name":"Minist\u00e8re de l'Education Nationale, de l'Enseignement Superieur et de la Recherche","ror":"https://ror.org/03sjk9a61"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3212334377.pdf","grobid_xml":"https://content.openalex.org/works/W3212334377.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W2024038403","https://openalex.org/W2039176012","https://openalex.org/W2049625541","https://openalex.org/W2076154138","https://openalex.org/W2084191969","https://openalex.org/W2095005830","https://openalex.org/W2098412979","https://openalex.org/W2102659607","https://openalex.org/W2110417468","https://openalex.org/W2118258530","https://openalex.org/W2124514674","https://openalex.org/W2126958666","https://openalex.org/W2129795133","https://openalex.org/W2160953907","https://openalex.org/W2170551349","https://openalex.org/W2171622167","https://openalex.org/W2171808845","https://openalex.org/W2188035077","https://openalex.org/W2259938310","https://openalex.org/W2532537254","https://openalex.org/W2607229512","https://openalex.org/W2767743008","https://openalex.org/W2767826728","https://openalex.org/W2777064170","https://openalex.org/W2785792383","https://openalex.org/W2803355270","https://openalex.org/W2805978167","https://openalex.org/W2900310474","https://openalex.org/W2901027836","https://openalex.org/W2951699110","https://openalex.org/W2982420272","https://openalex.org/W2988240595","https://openalex.org/W3045910546","https://openalex.org/W3096568637","https://openalex.org/W3097052776","https://openalex.org/W3102840277","https://openalex.org/W3105750359","https://openalex.org/W3108737349","https://openalex.org/W3109437984","https://openalex.org/W3109958717","https://openalex.org/W3111061871","https://openalex.org/W3215596355","https://openalex.org/W4205247356","https://openalex.org/W4213293580","https://openalex.org/W6804340647"],"related_works":["https://openalex.org/W4313509691","https://openalex.org/W3108101741","https://openalex.org/W2277277196","https://openalex.org/W2043274041","https://openalex.org/W3131178456","https://openalex.org/W1988612397","https://openalex.org/W1847045739","https://openalex.org/W4234163953","https://openalex.org/W4385977714","https://openalex.org/W4254703907"],"abstract_inverted_index":{"ReMap":[0,93,166,198],"(https://remap.univ-amu.fr)":[1],"aims":[2],"to":[3],"provide":[4],"manually":[5],"curated,":[6],"high-quality":[7],"catalogs":[8,101,152],"of":[9,18,30,65,73,114,123,128,146],"regulatory":[10,57,100,111,151],"regions":[11],"resulting":[12],"from":[13,48,143],"a":[14,63,71,121,170],"large-scale":[15],"integrative":[16],"analysis":[17],"DNA-binding":[19,45],"experiments":[20],"in":[21],"Human,":[22],"Mouse,":[23],"Fly":[24],"and":[25,33,105,126,161,183,191,196],"Arabidopsis":[26,81],"thaliana":[27],"for":[28,102],"hundreds":[29],"transcription":[31],"factors":[32],"regulators.":[34],"In":[35],"this":[36,92],"2022":[37,167],"update,":[38],"we":[39],"have":[40],"uniformly":[41],"processed":[42],">11":[43],"000":[44],"sequencing":[46],"datasets":[47,61],"public":[49],"sources":[50],"across":[51,88,117,140],"four":[52,150],"species.":[53],"The":[54,149],"updated":[55,80],"Human":[56],"atlas":[58,82],"includes":[59],"8103":[60],"covering":[62],"total":[64],"1210":[66],"transcriptional":[67],"regulators":[68],"(TRs)":[69],"with":[70,169,187],"catalog":[72,112,136],"182":[74],"million":[75],"(M)":[76],"peaks,":[77,85],"while":[78],"the":[79,109,124,133,144],"reaches":[83],"4.8M":[84],"423":[86],"TRs":[87,119,142],"694":[89],"datasets.":[90,131,148],"Also,":[91],"release":[94],"is":[95],"enriched":[96],"by":[97],"two":[98],"new":[99,171],"Mus":[103],"musculus":[104],"Drosophila":[106,134],"melanogaster.":[107],"First,":[108],"Mouse":[110],"consists":[113],"123M":[115],"peaks":[116,139],"648":[118],"as":[120],"result":[122],"integration":[125,145],"validation":[127],"5503":[129],"ChIP-seq":[130],"Second,":[132],"melanogaster":[135],"contains":[137],"16.6M":[138],"550":[141],"1205":[147],"are":[153],"browsable":[154],"through":[155],"track":[156],"hubs":[157],"at":[158],"UCSC,":[159],"Ensembl":[160],"NCBI":[162],"genome":[163],"browsers.":[164],"Finally,":[165],"comes":[168],"Cis":[172],"Regulatory":[173],"Module":[174],"identification":[175],"method,":[176],"improved":[177],"quality":[178],"controls,":[179],"faster":[180],"search":[181],"results,":[182],"better":[184],"user":[185],"experience":[186],"an":[188],"interactive":[189],"tour":[190],"video":[192],"tutorials":[193],"on":[194],"browsing":[195],"filtering":[197],"catalogs.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":62},{"year":2025,"cited_by_count":136},{"year":2024,"cited_by_count":140},{"year":2023,"cited_by_count":123},{"year":2022,"cited_by_count":40},{"year":2021,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}