{"id":"https://openalex.org/W3205926919","doi":"https://doi.org/10.1093/nar/gkab962","title":"UbiBrowser 2.0: a comprehensive resource for proteome-wide known and predicted ubiquitin ligase/deubiquitinase\u2013substrate interactions in eukaryotic species","display_name":"UbiBrowser 2.0: a comprehensive resource for proteome-wide known and predicted ubiquitin ligase/deubiquitinase\u2013substrate interactions in eukaryotic species","publication_year":2021,"publication_date":"2021-10-06","ids":{"openalex":"https://openalex.org/W3205926919","doi":"https://doi.org/10.1093/nar/gkab962","mag":"3205926919","pmid":"https://pubmed.ncbi.nlm.nih.gov/34669962"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab962","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab962","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkab962","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101963440","display_name":"Xun Wang","orcid":"https://orcid.org/0009-0004-0330-9473"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xun Wang","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100421452","display_name":"Yang Li","orcid":"https://orcid.org/0000-0002-2009-7079"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Li","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112898403","display_name":"Mengqi He","orcid":"https://orcid.org/0009-0004-3796-7175"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengqi He","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000728273","display_name":"Xiangren Kong","orcid":"https://orcid.org/0009-0005-6872-0367"},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangren Kong","raw_affiliation_strings":["College of Life Sciences, Hebei University, Baoding 071002, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Hebei University, Baoding 071002, China","institution_ids":["https://openalex.org/I43337087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038161005","display_name":"Peng Jiang","orcid":"https://orcid.org/0000-0002-4218-0092"},"institutions":[{"id":"https://openalex.org/I197869895","display_name":"Anhui Medical University","ror":"https://ror.org/03xb04968","country_code":"CN","type":"education","lineage":["https://openalex.org/I197869895"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Jiang","raw_affiliation_strings":["School of Basic Medical Sciences, Anhui Medical University, Hefei\u00a0230032, China"],"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Anhui Medical University, Hefei\u00a0230032, China","institution_ids":["https://openalex.org/I197869895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101604113","display_name":"Xi Liu","orcid":"https://orcid.org/0000-0002-8011-5419"},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xi Liu","raw_affiliation_strings":["College of Life Sciences, Hebei University, Baoding 071002, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Hebei University, Baoding 071002, China","institution_ids":["https://openalex.org/I43337087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006707490","display_name":"Lihong Diao","orcid":"https://orcid.org/0000-0003-3484-3674"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lihong Diao","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100744954","display_name":"Xinlei Zhang","orcid":"https://orcid.org/0000-0003-2281-3363"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xinlei Zhang","raw_affiliation_strings":["Beijing Geneworks Technology Co.,Ltd., Beijing 100101, China"],"affiliations":[{"raw_affiliation_string":"Beijing Geneworks Technology Co.,Ltd., Beijing 100101, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100321710","display_name":"Honglei Li","orcid":"https://orcid.org/0000-0002-6085-0950"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Honglei Li","raw_affiliation_strings":["Beijing Geneworks Technology Co.,Ltd., Beijing 100101, China"],"affiliations":[{"raw_affiliation_string":"Beijing Geneworks Technology Co.,Ltd., Beijing 100101, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042058961","display_name":"Xinping Ling","orcid":"https://orcid.org/0009-0006-5047-5583"},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinping Ling","raw_affiliation_strings":["College of Life Sciences, Hebei University, Baoding 071002, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Hebei University, Baoding 071002, China","institution_ids":["https://openalex.org/I43337087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026583557","display_name":"Simin Xia","orcid":"https://orcid.org/0000-0002-3833-3340"},"institutions":[{"id":"https://openalex.org/I197869895","display_name":"Anhui Medical University","ror":"https://ror.org/03xb04968","country_code":"CN","type":"education","lineage":["https://openalex.org/I197869895"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Simin Xia","raw_affiliation_strings":["School of Basic Medical Sciences, Anhui Medical University, Hefei\u00a0230032, China"],"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Anhui Medical University, Hefei\u00a0230032, China","institution_ids":["https://openalex.org/I197869895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000245553","display_name":"Zhongyang Liu","orcid":"https://orcid.org/0000-0002-3371-2392"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]},{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhongyang Liu","raw_affiliation_strings":["College of Life Sciences, Hebei University, Baoding 071002, China","State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Hebei University, Baoding 071002, China","institution_ids":["https://openalex.org/I43337087"]},{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100390864","display_name":"Yuan Liu","orcid":"https://orcid.org/0000-0003-4783-5905"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Liu","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056762681","display_name":"Chun\u2010Ping Cui","orcid":"https://orcid.org/0000-0003-0251-3259"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun-Ping Cui","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100322938","display_name":"Yan Wang","orcid":"https://orcid.org/0000-0003-2563-255X"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Wang","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017648452","display_name":"Liujun Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liujun Tang","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036670052","display_name":"Lingqiang Zhang","orcid":"https://orcid.org/0000-0002-9795-2141"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]},{"id":"https://openalex.org/I197869895","display_name":"Anhui Medical University","ror":"https://ror.org/03xb04968","country_code":"CN","type":"education","lineage":["https://openalex.org/I197869895"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lingqiang Zhang","raw_affiliation_strings":["School of Basic Medical Sciences, Anhui Medical University, Hefei\u00a0230032, China","State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"School of Basic Medical Sciences, Anhui Medical University, Hefei\u00a0230032, China","institution_ids":["https://openalex.org/I197869895"]},{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091436402","display_name":"Fuchu He","orcid":"https://orcid.org/0000-0002-8571-2351"},"institutions":[{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fuchu He","raw_affiliation_strings":["State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100407488","display_name":"Dong Li","orcid":"https://orcid.org/0000-0002-8680-0468"},"institutions":[{"id":"https://openalex.org/I197869895","display_name":"Anhui Medical University","ror":"https://ror.org/03xb04968","country_code":"CN","type":"education","lineage":["https://openalex.org/I197869895"]},{"id":"https://openalex.org/I4210149540","display_name":"Beijing Proteome Research Center","ror":"https://ror.org/05pp5b412","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210149540"]},{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dong Li","raw_affiliation_strings":["College of Life Sciences, Hebei University, Baoding 071002, China","School of Basic Medical Sciences, Anhui Medical University, Hefei\u00a0230032, China","State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Hebei University, Baoding 071002, China","institution_ids":["https://openalex.org/I43337087"]},{"raw_affiliation_string":"School of Basic Medical Sciences, Anhui Medical University, Hefei\u00a0230032, China","institution_ids":["https://openalex.org/I197869895"]},{"raw_affiliation_string":"State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China","institution_ids":["https://openalex.org/I4210149540"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":19,"corresponding_author_ids":["https://openalex.org/A5036670052","https://openalex.org/A5091436402","https://openalex.org/A5100407488"],"corresponding_institution_ids":["https://openalex.org/I197869895","https://openalex.org/I4210149540","https://openalex.org/I43337087"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":12.7364,"has_fulltext":false,"cited_by_count":233,"citation_normalized_percentile":{"value":0.99361187,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"50","issue":"D1","first_page":"D719","last_page":"D728"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9364683628082275},{"id":"https://openalex.org/keywords/deubiquitinating-enzyme","display_name":"Deubiquitinating enzyme","score":0.8696726560592651},{"id":"https://openalex.org/keywords/ubiquitin","display_name":"Ubiquitin","score":0.7601281404495239},{"id":"https://openalex.org/keywords/ubiquitin-ligase","display_name":"Ubiquitin ligase","score":0.7407259941101074},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.602399468421936},{"id":"https://openalex.org/keywords/substrate-specificity","display_name":"Substrate specificity","score":0.5388533473014832},{"id":"https://openalex.org/keywords/dna-ligase","display_name":"DNA ligase","score":0.5244348645210266},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.519450843334198},{"id":"https://openalex.org/keywords/ubiquitin-protein-ligases","display_name":"Ubiquitin-Protein Ligases","score":0.4791138172149658},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.4630349576473236},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.44771379232406616},{"id":"https://openalex.org/keywords/substrate","display_name":"Substrate (aquarium)","score":0.4476472735404968},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35564881563186646},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.3076573610305786},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13389545679092407},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.12906789779663086}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9364683628082275},{"id":"https://openalex.org/C102658986","wikidata":"https://www.wikidata.org/wiki/Q5266092","display_name":"Deubiquitinating enzyme","level":4,"score":0.8696726560592651},{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.7601281404495239},{"id":"https://openalex.org/C134459356","wikidata":"https://www.wikidata.org/wiki/Q4274835","display_name":"Ubiquitin ligase","level":4,"score":0.7407259941101074},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.602399468421936},{"id":"https://openalex.org/C2994592520","wikidata":"https://www.wikidata.org/wiki/Q5090496","display_name":"Substrate specificity","level":3,"score":0.5388533473014832},{"id":"https://openalex.org/C175114707","wikidata":"https://www.wikidata.org/wiki/Q408483","display_name":"DNA ligase","level":3,"score":0.5244348645210266},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.519450843334198},{"id":"https://openalex.org/C2908868211","wikidata":"https://www.wikidata.org/wiki/Q4274835","display_name":"Ubiquitin-Protein Ligases","level":5,"score":0.4791138172149658},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.4630349576473236},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.44771379232406616},{"id":"https://openalex.org/C2777289219","wikidata":"https://www.wikidata.org/wiki/Q7632154","display_name":"Substrate (aquarium)","level":2,"score":0.4476472735404968},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35564881563186646},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.3076573610305786},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13389545679092407},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.12906789779663086}],"mesh":[{"descriptor_ui":"D000072017","descriptor_name":"Deubiquitinating Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D000072017","descriptor_name":"Deubiquitinating Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D000072017","descriptor_name":"Deubiquitinating Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D000072017","descriptor_name":"Deubiquitinating Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000072017","descriptor_name":"Deubiquitinating Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000072017","descriptor_name":"Deubiquitinating Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkab962","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab962","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:34669962","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34669962","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8728189","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8728189","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab962","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab962","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1825756186","display_name":null,"funder_award_id":"31871341","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3595733581","display_name":null,"funder_award_id":"2020YFE0202200","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5455563334","display_name":null,"funder_award_id":"32088101","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320336570","display_name":"Beijing Talents Fund","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1490161904","https://openalex.org/W1618846043","https://openalex.org/W1976041483","https://openalex.org/W1997197733","https://openalex.org/W2000042427","https://openalex.org/W2008859668","https://openalex.org/W2017024968","https://openalex.org/W2030530458","https://openalex.org/W2067706259","https://openalex.org/W2078316386","https://openalex.org/W2100547839","https://openalex.org/W2107432340","https://openalex.org/W2117722211","https://openalex.org/W2122863289","https://openalex.org/W2124463526","https://openalex.org/W2131950257","https://openalex.org/W2133053859","https://openalex.org/W2135278768","https://openalex.org/W2153577994","https://openalex.org/W2610341666","https://openalex.org/W2745944099","https://openalex.org/W2767152811","https://openalex.org/W2797068477","https://openalex.org/W2802867560","https://openalex.org/W2891311921","https://openalex.org/W2938862235","https://openalex.org/W2944951456","https://openalex.org/W2973062646","https://openalex.org/W2998074406","https://openalex.org/W3009097360","https://openalex.org/W3044237032","https://openalex.org/W3045720050","https://openalex.org/W3091696541","https://openalex.org/W3095583226","https://openalex.org/W3126268375","https://openalex.org/W3133571965","https://openalex.org/W3172179160","https://openalex.org/W3179244564"],"related_works":["https://openalex.org/W1998215017","https://openalex.org/W2112142795","https://openalex.org/W2037487430","https://openalex.org/W2794270490","https://openalex.org/W4286008876","https://openalex.org/W2096787468","https://openalex.org/W2797773019","https://openalex.org/W4248285230","https://openalex.org/W2135178058","https://openalex.org/W2121772170"],"abstract_inverted_index":{"As":[0],"an":[1,42,73],"important":[2],"post-translational":[3],"modification,":[4],"ubiquitination":[5,17,30,190],"mediates":[6],"\u223c80%":[7],"of":[8,15,57,148,167,188,194],"protein":[9,16,189],"degradation":[10],"in":[11,62,93,99,110],"eukaryotes.":[12],"The":[13],"degree":[14],"is":[18,41],"tightly":[19],"determined":[20],"by":[21,81],"the":[22,54,111,146,154,186,192],"delicate":[23],"balance":[24],"between":[25],"specific":[26],"ubiquitin":[27],"ligase":[28],"(E3)-mediated":[29],"and":[31,84,122,161,164,170,191],"deubiquitinase-mediated":[32],"deubiquitination.":[33],"In":[34,103],"2017,":[35],"we":[36,65,76,85,105,151],"developed":[37],"UbiBrowser":[38,67,149,177],"1.0,":[39],"which":[40],"integrated":[43],"database":[44],"for":[45,157,197],"predicted":[46,86,142,162],"human":[47],"proteome-wide":[48,58],"E3-substrate":[49],"interactions.":[50],"Here,":[51],"to":[52,68,140,185],"meet":[53],"urgent":[55],"requirement":[56],"E3/deubiquitinase-substrate":[59],"interactions":[60],"(ESIs/DSIs)":[61],"multiple":[63],"organisms,":[64,95],"updated":[66,112],"version":[69],"2.0":[70],"(http://ubibrowser.ncpsb.org.cn).":[71],"Using":[72],"improved":[74],"protocol,":[75],"collected":[77],"4068/967":[78],"known":[79,160],"ESIs/DSIs":[80,92],"manual":[82],"curation,":[83],"about":[87],"2.2":[88],"million":[89],"highly":[90],"confident":[91],"39":[94],"with":[96],">210-fold":[97],"increase":[98],"total":[100],"data":[101],"volume.":[102],"addition,":[104],"made":[106],"several":[107],"new":[108],"features":[109],"version:":[113],"(i)":[114],"it":[115,126,133],"allows":[116],"exploring":[117,158],"proteins'":[118],"upstream":[119],"E3":[120],"ligases":[121],"deubiquitinases":[123],"simultaneously;":[124],"(ii)":[125],"has":[127],"significantly":[128],"increased":[129],"species":[130],"coverage;":[131],"(iii)":[132],"presents":[134],"a":[135,180],"uniform":[136],"confidence":[137],"scoring":[138],"system":[139],"rank":[141],"ESIs/DSIs.":[143],"To":[144],"facilitate":[145],"usage":[147],"2.0,":[150,178],"also":[152],"redesigned":[153],"web":[155],"interface":[156],"these":[159],"ESIs/DSIs,":[163],"added":[165],"functions":[166],"'Browse',":[168],"'Download'":[169],"'Application":[171],"Programming":[172],"Interface'.":[173],"We":[174],"believe":[175],"that":[176],"as":[179],"discovery":[181],"tool,":[182],"will":[183],"contribute":[184],"study":[187],"development":[193],"drug":[195],"targets":[196],"complex":[198],"diseases.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":25},{"year":2025,"cited_by_count":71},{"year":2024,"cited_by_count":88},{"year":2023,"cited_by_count":31},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":2}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}
