{"id":"https://openalex.org/W3206696710","doi":"https://doi.org/10.1093/nar/gkab920","title":"Kincore: a web resource for structural classification of protein kinases and their inhibitors","display_name":"Kincore: a web resource for structural classification of protein kinases and their inhibitors","publication_year":2021,"publication_date":"2021-09-30","ids":{"openalex":"https://openalex.org/W3206696710","doi":"https://doi.org/10.1093/nar/gkab920","mag":"3206696710","pmid":"https://pubmed.ncbi.nlm.nih.gov/34643709"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab920","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab920","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkab920","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042006839","display_name":"Vivek Modi","orcid":"https://orcid.org/0000-0002-9742-0559"},"institutions":[{"id":"https://openalex.org/I1289437631","display_name":"Fox Chase Cancer Center","ror":"https://ror.org/0567t7073","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1289437631","https://openalex.org/I4210122924"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vivek Modi","raw_affiliation_strings":["Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia, PA\u00a019148, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia, PA\u00a019148, USA","institution_ids":["https://openalex.org/I1289437631"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053977807","display_name":"Roland L. Dunbrack","orcid":"https://orcid.org/0000-0001-7674-6667"},"institutions":[{"id":"https://openalex.org/I1289437631","display_name":"Fox Chase Cancer Center","ror":"https://ror.org/0567t7073","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1289437631","https://openalex.org/I4210122924"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Roland L Dunbrack","raw_affiliation_strings":["Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia, PA\u00a019148, USA"],"raw_orcid":"https://orcid.org/0000-0001-7674-6667","affiliations":[{"raw_affiliation_string":"Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia, PA\u00a019148, USA","institution_ids":["https://openalex.org/I1289437631"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5053977807"],"corresponding_institution_ids":["https://openalex.org/I1289437631"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":10.4208,"has_fulltext":false,"cited_by_count":119,"citation_normalized_percentile":{"value":0.99007491,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"50","issue":"D1","first_page":"D654","last_page":"D664"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11157","display_name":"Chronic Lymphocytic Leukemia Research","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/2716","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11157","display_name":"Chronic Lymphocytic Leukemia Research","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/2716","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10169","display_name":"Protein Kinase Regulation and GTPase Signaling","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10952","display_name":"PI3K/AKT/mTOR signaling in cancer","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9526033401489258},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.6653977632522583},{"id":"https://openalex.org/keywords/protein-serine-threonine-kinases","display_name":"Protein-Serine-Threonine Kinases","score":0.6453607082366943},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5723406672477722},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5105162858963013},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.37951380014419556},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3707202970981598},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.36567187309265137},{"id":"https://openalex.org/keywords/protein-kinase-a","display_name":"Protein kinase A","score":0.3179691433906555},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.09921422600746155}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9526033401489258},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.6653977632522583},{"id":"https://openalex.org/C2910050888","wikidata":"https://www.wikidata.org/wiki/Q4857068","display_name":"Protein-Serine-Threonine Kinases","level":4,"score":0.6453607082366943},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5723406672477722},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5105162858963013},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.37951380014419556},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3707202970981598},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.36567187309265137},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.3179691433906555},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.09921422600746155},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047428","descriptor_name":"Protein Kinase Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkab920","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab920","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:34643709","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34643709","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8728253","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8728253","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab920","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab920","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G465856897","display_name":null,"funder_award_id":"R35 GM122517","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1968427979","https://openalex.org/W1969407832","https://openalex.org/W1975436091","https://openalex.org/W1978329718","https://openalex.org/W1994105285","https://openalex.org/W2020293198","https://openalex.org/W2025439513","https://openalex.org/W2030205108","https://openalex.org/W2045694062","https://openalex.org/W2050607786","https://openalex.org/W2051872583","https://openalex.org/W2066123607","https://openalex.org/W2067405360","https://openalex.org/W2077804275","https://openalex.org/W2079620307","https://openalex.org/W2109321699","https://openalex.org/W2114850508","https://openalex.org/W2128307445","https://openalex.org/W2131174104","https://openalex.org/W2132334410","https://openalex.org/W2133824400","https://openalex.org/W2141743775","https://openalex.org/W2145442626","https://openalex.org/W2156480395","https://openalex.org/W2158714788","https://openalex.org/W2163915395","https://openalex.org/W2170463736","https://openalex.org/W2583429502","https://openalex.org/W2584855580","https://openalex.org/W2739999456","https://openalex.org/W2763443264","https://openalex.org/W2794211762","https://openalex.org/W2806290811","https://openalex.org/W2898073106","https://openalex.org/W2914461011","https://openalex.org/W2922340164","https://openalex.org/W2997958114","https://openalex.org/W3004246645","https://openalex.org/W3004762425","https://openalex.org/W3032953031","https://openalex.org/W3042403428","https://openalex.org/W3093634533","https://openalex.org/W3108409372","https://openalex.org/W3158681841","https://openalex.org/W3163208408","https://openalex.org/W3171658051","https://openalex.org/W3177828909","https://openalex.org/W3183475563","https://openalex.org/W4281790889","https://openalex.org/W6799956455"],"related_works":["https://openalex.org/W2034716199","https://openalex.org/W2883746216","https://openalex.org/W2051108283","https://openalex.org/W2058245465","https://openalex.org/W2123193379","https://openalex.org/W3001000315","https://openalex.org/W1978560744","https://openalex.org/W2018932085","https://openalex.org/W1973643543","https://openalex.org/W2036331617"],"abstract_inverted_index":{"The":[0,136,164],"active":[1],"form":[2],"of":[3,23,26,30,55,62,74,84,152,184,190],"kinases":[4],"is":[5,196],"shared":[6],"across":[7],"different":[8],"family":[9],"members,":[10],"as":[11],"are":[12,68],"several":[13],"commonly":[14],"observed":[15],"inactive":[16],"forms.":[17],"We":[18,86],"previously":[19],"performed":[20],"a":[21,89,153,161],"clustering":[22],"the":[24,27,36,46,51,56,60,63,72,75,78,102,119,123,142,149,157,174,181],"conformation":[25],"activation":[28,64,76],"loop":[29],"all":[31],"protein":[32],"kinase":[33,99,134,154],"structures":[34,100],"in":[35,101,179],"Protein":[37],"Data":[38],"Bank":[39],"(PDB)":[40],"into":[41],"eight":[42],"classes":[43],"based":[44],"on":[45],"dihedral":[47],"angles":[48],"that":[49],"place":[50],"Phe":[52],"side":[53],"chain":[54],"DFG":[57],"motif":[58],"at":[59,198],"N-terminus":[61],"loop.":[65],"Our":[66],"clusters":[67],"strongly":[69],"associated":[70],"with":[71],"placement":[73],"loop,":[77],"C-helix,":[79],"and":[80,122,140,166,187],"other":[81,105],"structural":[82],"elements":[83],"kinases.":[85],"present":[87],"Kincore,":[88],"web":[90,158],"resource":[91],"providing":[92],"access":[93],"to":[94],"our":[95],"conformational":[96,109,120,150,182],"assignments":[97],"for":[98,132],"PDB.":[103],"While":[104],"available":[106,197],"databases":[107],"provide":[108],"states":[110],"or":[111,147,160],"drug":[112],"type":[113,125],"but":[114],"not":[115],"both,":[116],"KinCore":[117],"includes":[118],"state":[121],"inhibitor":[124],"(Type":[126],"1,":[127],"1.5,":[128],"2,":[129],"3,":[130],"allosteric)":[131],"each":[133],"chain.":[135],"user":[137],"can":[138,170],"query":[139],"browse":[141],"database":[143,165],"using":[144,156],"these":[145,185],"attributes":[146],"determine":[148],"labels":[151],"structure":[155,168],"server":[159],"standalone":[162],"program.":[163],"labeled":[167],"files":[169],"be":[171],"downloaded":[172],"from":[173],"server.":[175],"Kincore":[176,195],"will":[177],"help":[178],"understanding":[180],"dynamics":[183],"proteins":[186],"guide":[188],"development":[189],"inhibitors":[191],"targeting":[192],"specific":[193],"states.":[194],"http://dunbrack.fccc.edu/kincore.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":21},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":37},{"year":2023,"cited_by_count":23},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":4}],"updated_date":"2026-06-12T08:23:45.883708","created_date":"2025-10-10T00:00:00"}
