{"id":"https://openalex.org/W3207874829","doi":"https://doi.org/10.1093/nar/gkab912","title":"LIRBase: a comprehensive database of long inverted repeats in eukaryotic genomes","display_name":"LIRBase: a comprehensive database of long inverted repeats in eukaryotic genomes","publication_year":2021,"publication_date":"2021-09-30","ids":{"openalex":"https://openalex.org/W3207874829","doi":"https://doi.org/10.1093/nar/gkab912","mag":"3207874829","pmid":"https://pubmed.ncbi.nlm.nih.gov/34643715"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab912","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab912","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkab912","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108050365","display_name":"Lihua Jia","orcid":"https://orcid.org/0000-0002-6972-8599"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lihua Jia","raw_affiliation_strings":["National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China","National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102765755","display_name":"Yang Li","orcid":"https://orcid.org/0000-0003-1201-3135"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Li","raw_affiliation_strings":["National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050089664","display_name":"Fangfang Huang","orcid":"https://orcid.org/0000-0001-5398-7978"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fangfang Huang","raw_affiliation_strings":["National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083826012","display_name":"Yingru Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingru Jiang","raw_affiliation_strings":["National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100327753","display_name":"Haoran Li","orcid":"https://orcid.org/0009-0009-2470-9448"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoran Li","raw_affiliation_strings":["National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076279369","display_name":"Zhizhan Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhizhan Wang","raw_affiliation_strings":["National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100736287","display_name":"Tiantian Chen","orcid":"https://orcid.org/0000-0001-6090-099X"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tiantian Chen","raw_affiliation_strings":["National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100326752","display_name":"Jiaming Li","orcid":"https://orcid.org/0000-0002-9065-6913"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaming Li","raw_affiliation_strings":["National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100599306","display_name":"Zhang Zhang","orcid":"https://orcid.org/0000-0001-6603-5060"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhang Zhang","raw_affiliation_strings":["CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China","China National Center for Bioinformation, Beijing 100101, China","National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China","University of Chinese Academy of Sciences, Beijing 100101, China"],"raw_orcid":"https://orcid.org/0000-0001-6603-5060","affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"China National Center for Bioinformation, Beijing 100101, China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China","institution_ids":["https://openalex.org/I2801577699"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences, Beijing 100101, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015085832","display_name":"Wen Yao","orcid":"https://orcid.org/0000-0002-0643-506X"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wen Yao","raw_affiliation_strings":["National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China"],"raw_orcid":"https://orcid.org/0000-0002-0643-506X","affiliations":[{"raw_affiliation_string":"National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou 450002, China","institution_ids":["https://openalex.org/I4750791"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5015085832","https://openalex.org/A5100599306"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I2801577699","https://openalex.org/I4210162648","https://openalex.org/I4210165038","https://openalex.org/I4750791"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.1586,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.48672796,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"50","issue":"D1","first_page":"D174","last_page":"D182"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7194249629974365},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.6523259878158569},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.57736736536026},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4432673752307892},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33620548248291016},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14978930354118347}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7194249629974365},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.6523259878158569},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.57736736536026},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4432673752307892},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33620548248291016},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14978930354118347}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055029","descriptor_name":"Inverted Repeat Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D055029","descriptor_name":"Inverted Repeat Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D055029","descriptor_name":"Inverted Repeat Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkab912","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab912","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:34643715","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34643715","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8728187","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8728187","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab912","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab912","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.4699999988079071,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1265354603","display_name":null,"funder_award_id":"XDA19050302","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G2184357362","display_name":null,"funder_award_id":"32030021","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4167245607","display_name":null,"funder_award_id":"30500581","funder_id":"https://openalex.org/F4320325562","funder_display_name":"Henan Agricultural University"},{"id":"https://openalex.org/G4244859135","display_name":null,"funder_award_id":"2017YFC0907502","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6178198122","display_name":null,"funder_award_id":"31900451","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7564910806","display_name":null,"funder_award_id":"31871328","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320325562","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1119776812","https://openalex.org/W1969865366","https://openalex.org/W1991531009","https://openalex.org/W2023563789","https://openalex.org/W2029185005","https://openalex.org/W2031707613","https://openalex.org/W2033518550","https://openalex.org/W2034255392","https://openalex.org/W2036666081","https://openalex.org/W2040058302","https://openalex.org/W2042300850","https://openalex.org/W2042873716","https://openalex.org/W2045214060","https://openalex.org/W2055043387","https://openalex.org/W2067141790","https://openalex.org/W2072591161","https://openalex.org/W2086561953","https://openalex.org/W2095326628","https://openalex.org/W2105093394","https://openalex.org/W2118999270","https://openalex.org/W2122135986","https://openalex.org/W2124985265","https://openalex.org/W2128910215","https://openalex.org/W2138098955","https://openalex.org/W2141272722","https://openalex.org/W2143407346","https://openalex.org/W2149335334","https://openalex.org/W2151374010","https://openalex.org/W2179438025","https://openalex.org/W2507245928","https://openalex.org/W2523370561","https://openalex.org/W2582743722","https://openalex.org/W2605233257","https://openalex.org/W2763937007","https://openalex.org/W2768308516","https://openalex.org/W2885832363","https://openalex.org/W2886705316","https://openalex.org/W2898365338","https://openalex.org/W2898389114","https://openalex.org/W2950454586","https://openalex.org/W2968812970","https://openalex.org/W2983563105","https://openalex.org/W2994632914","https://openalex.org/W3000121346","https://openalex.org/W3006364457","https://openalex.org/W3092885151","https://openalex.org/W3093856909","https://openalex.org/W4206037526","https://openalex.org/W6806115372"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802","https://openalex.org/W4234157524"],"abstract_inverted_index":{"Small":[0],"RNAs":[1,23,33],"(sRNAs)":[2],"constitute":[3],"a":[4,45,60,85,92],"large":[5],"portion":[6],"of":[7,47,63,76,88,95,116,146,159,183,188,191],"functional":[8,186],"elements":[9],"in":[10,52,91,112,119,133,197],"eukaryotic":[11,54,67,96,114],"genomes.":[12,97],"Long":[13],"inverted":[14],"repeats":[15],"(LIRs)":[16],"can":[17,26],"be":[18,28],"transcribed":[19],"into":[20,30],"long":[21,79,161],"hairpin":[22],"(hpRNAs),":[24],"which":[25],"further":[27],"processed":[29],"small":[31],"interfering":[32],"(siRNAs)":[34],"with":[35],"vital":[36],"biological":[37],"roles.":[38],"In":[39,98],"this":[40],"study,":[41],"we":[42],"systematically":[43],"identified":[44,90,110],"total":[46],"6":[48],"619":[49],"473":[50],"LIRs":[51,64,77,89,111,132,184,192],"424":[53],"genomes":[55,68],"and":[56,74,81,107,154,181,185,193],"developed":[57],"LIRBase":[58,83,100,173],"(https://venyao.xyz/lirbase/),":[59],"specialized":[61],"database":[62],"across":[65],"different":[66],"aiming":[69],"to":[70,105,127,130,140],"facilitate":[71,128],"the":[72,109,156,175],"annotation":[73],"identification":[75],"encoding":[78],"hpRNAs":[80,162],"siRNAs.":[82],"houses":[84],"comprehensive":[86],"collection":[87],"wide":[93],"range":[94],"addition,":[99],"not":[101],"only":[102],"allows":[103],"users":[104,129],"browse":[106],"search":[108],"any":[113],"genome(s)":[115],"interest":[117],"available":[118],"GenBank,":[120],"but":[121],"also":[122],"provides":[123],"friendly":[124],"web":[125],"functionalities":[126],"identify":[131],"user-uploaded":[134],"sequences,":[135],"align":[136],"sRNA":[137],"sequencing":[138],"data":[139],"LIRs,":[141,147],"perform":[142],"differential":[143],"expression":[144],"analysis":[145],"predict":[148],"mRNA":[149],"targets":[150],"for":[151,178],"LIR-derived":[152],"siRNAs,":[153],"visualize":[155],"secondary":[157],"structure":[158],"candidate":[160],"encoded":[163],"by":[164,168],"LIRs.":[165],"As":[166],"demonstrated":[167],"two":[169],"case":[170],"studies,":[171],"collectively,":[172],"bears":[174],"great":[176],"utility":[177],"systematic":[179],"investigation":[180],"characterization":[182],"exploration":[187],"potential":[189],"roles":[190],"their":[194],"derived":[195],"siRNAs":[196],"diverse":[198],"species.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
