{"id":"https://openalex.org/W3167995117","doi":"https://doi.org/10.1093/nar/gkab456","title":"<tt>CRISPRloci:</tt>\u00a0comprehensive and accurate annotation of CRISPR\u2013Cas systems","display_name":"<tt>CRISPRloci:</tt>\u00a0comprehensive and accurate annotation of CRISPR\u2013Cas systems","publication_year":2021,"publication_date":"2021-05-17","ids":{"openalex":"https://openalex.org/W3167995117","doi":"https://doi.org/10.1093/nar/gkab456","mag":"3167995117","pmid":"https://pubmed.ncbi.nlm.nih.gov/34133710"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab456","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab456","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W125/38842297/gkab456.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/W1/W125/38842297/gkab456.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008400965","display_name":"Omer S. Alkhnbashi","orcid":"https://orcid.org/0000-0001-8088-590X"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Omer S Alkhnbashi","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8088-590X","affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104249767","display_name":"Alexander Mitrofanov","orcid":"https://orcid.org/0000-0002-9289-6726"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander Mitrofanov","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076993536","display_name":"Robson Parmezan Bonidia","orcid":"https://orcid.org/0000-0003-4975-7867"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Robson Bonidia","raw_affiliation_strings":["Institute of Mathematics and Computer Sciences, University of S\u00e3o Paulo, S\u00e3o Carlos, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Sciences, University of S\u00e3o Paulo, S\u00e3o Carlos, SP, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016009812","display_name":"Martin Raden","orcid":"https://orcid.org/0000-0002-7926-5911"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Raden","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7926-5911","affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042136390","display_name":"Tran Van Dinh","orcid":"https://orcid.org/0000-0002-7357-4959"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Van\u00a0Dinh Tran","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7357-4959","affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063976174","display_name":"Florian Eggenhofer","orcid":"https://orcid.org/0000-0001-9564-7525"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Florian Eggenhofer","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9564-7525","affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003808615","display_name":"Shiraz A. Shah","orcid":"https://orcid.org/0000-0002-4665-577X"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I2802582725","display_name":"Gentofte Hospital","ror":"https://ror.org/051dzw862","country_code":"DK","type":"healthcare","lineage":["https://openalex.org/I2802582725"]},{"id":"https://openalex.org/I4210123840","display_name":"Copenhagen Prospective Studies on Asthma in Childhood","ror":"https://ror.org/034zy7551","country_code":"DK","type":"facility","lineage":["https://openalex.org/I4210123840"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Shiraz\u00a0A Shah","raw_affiliation_strings":["Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Denmark","institution_ids":["https://openalex.org/I4210123840","https://openalex.org/I124055696","https://openalex.org/I2802582725"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061424154","display_name":"Ekrem \u00d6zt\u00fcrk","orcid":null},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ekrem \u00d6zt\u00fcrk","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036186422","display_name":"Victor Alexandre Padilha","orcid":"https://orcid.org/0000-0002-8060-0350"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Victor\u00a0A Padilha","raw_affiliation_strings":["Institute of Mathematics and Computer Sciences, University of S\u00e3o Paulo, S\u00e3o Carlos, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Sciences, University of S\u00e3o Paulo, S\u00e3o Carlos, SP, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088676977","display_name":"Danilo Sipoli Sanches","orcid":"https://orcid.org/0000-0002-8972-5221"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Danilo\u00a0S Sanches","raw_affiliation_strings":["Universidade Tecnol\u00f3gica Federal do Paran\u00e1, Campus Corn\u00e9lio Proc\u00f3pio, 86300000 Corn\u00e9lio Proc\u00f3pio, PR,\u00a0Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1, Campus Corn\u00e9lio Proc\u00f3pio, 86300000 Corn\u00e9lio Proc\u00f3pio, PR,\u00a0Brazil","institution_ids":["https://openalex.org/I1283613182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079499583","display_name":"Andr\u00e9 C. P. L. F. de Carvalho","orcid":"https://orcid.org/0000-0002-4765-6459"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Andr\u00e9\u00a0C\u00a0P\u00a0L\u00a0F de\u00a0Carvalho","raw_affiliation_strings":["Institute of Mathematics and Computer Sciences, University of S\u00e3o Paulo, S\u00e3o Carlos, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Sciences, University of S\u00e3o Paulo, S\u00e3o Carlos, SP, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017672883","display_name":"Rolf Backofen","orcid":"https://orcid.org/0000-0001-8231-3323"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Rolf Backofen","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany","Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Schaenzlestr. 18, 79104 Freiburg, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8231-3323","affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Schaenzlestr. 18, 79104 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5017672883"],"corresponding_institution_ids":["https://openalex.org/I161046081"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3519,"currency":"EUR","value_usd":3795},"fwci":3.501,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.94041221,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"49","issue":"W1","first_page":"W125","last_page":"W130"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9836999773979187,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11112","display_name":"Viral Infections and Immunology Research","score":0.9330000281333923,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.9450682997703552},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8081049919128418},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6570546627044678},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6071153283119202},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45155489444732666},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4256824254989624},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3262268006801605},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28083324432373047}],"concepts":[{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.9450682997703552},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8081049919128418},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6570546627044678},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6071153283119202},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45155489444732666},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4256824254989624},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3262268006801605},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28083324432373047},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064130","descriptor_name":"CRISPR-Associated Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D064130","descriptor_name":"CRISPR-Associated Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D064130","descriptor_name":"CRISPR-Associated Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D064130","descriptor_name":"CRISPR-Associated Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064130","descriptor_name":"CRISPR-Associated Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064130","descriptor_name":"CRISPR-Associated Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkab456","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab456","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W125/38842297/gkab456.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:34133710","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34133710","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8265192","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8265192","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab456","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab456","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W125/38842297/gkab456.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3863061308","display_name":null,"funder_award_id":"BA 2168/23-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4935269520","display_name":null,"funder_award_id":"390939984","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G5967000742","display_name":null,"funder_award_id":"PROEX-11919694/D","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G5990746028","display_name":null,"funder_award_id":"2013/07375-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G6349713292","display_name":null,"funder_award_id":"BA 2168/11-2","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6805876480","display_name":null,"funder_award_id":"BA 2168/3-3","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7717818808","display_name":null,"funder_award_id":"BA 2168/11-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8872520400","display_name":null,"funder_award_id":"2019/21300-9","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320321421","display_name":"Albert-Ludwigs-Universit\u00e4t Freiburg","ror":"https://ror.org/0245cg223"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W363291993","https://openalex.org/W1594031697","https://openalex.org/W1977429572","https://openalex.org/W2051210555","https://openalex.org/W2053019594","https://openalex.org/W2056132907","https://openalex.org/W2059051300","https://openalex.org/W2086561953","https://openalex.org/W2086860427","https://openalex.org/W2135689945","https://openalex.org/W2149635735","https://openalex.org/W2156909104","https://openalex.org/W2163241233","https://openalex.org/W2199695484","https://openalex.org/W2513235972","https://openalex.org/W2515318336","https://openalex.org/W2765745983","https://openalex.org/W2803245377","https://openalex.org/W2803724695","https://openalex.org/W2809341917","https://openalex.org/W2963107018","https://openalex.org/W2995081665","https://openalex.org/W3036373230","https://openalex.org/W3109626990","https://openalex.org/W3111496797","https://openalex.org/W6786855451"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W4293199045","https://openalex.org/W2405656580","https://openalex.org/W3162049976","https://openalex.org/W2642604616","https://openalex.org/W4381712632","https://openalex.org/W3163009052","https://openalex.org/W4365936098","https://openalex.org/W4213036952","https://openalex.org/W4377030018"],"abstract_inverted_index":{"CRISPR-Cas":[0,213],"systems":[1,5],"are":[2,194],"adaptive":[3],"immune":[4],"in":[6,94,171,188,197],"prokaryotes,":[7],"providing":[8],"resistance":[9],"against":[10],"invading":[11],"viruses":[12],"and":[13,42,47,65,106,112,128,144],"plasmids.":[14],"The":[15,72],"identification":[16],"of":[17,30,39,50,67,77,90,100,109,139,155,159,184,191],"CRISPR":[18,53,70,92,101,126,186],"loci":[19],"is":[20,120,169],"currently":[21],"a":[22,75,83,117,209],"non-standardized,":[23],"ambiguous":[24],"process,":[25],"requiring":[26],"the":[27,40,51,59,63,95,125,133,140,153,185],"manual":[28,224],"combination":[29],"multiple":[31],"tools,":[32],"where":[33],"existing":[34,165],"tools":[35,81],"detect":[36],"only":[37,222],"parts":[38],"CRISPR-systems,":[41],"lack":[43],"quality":[44,219],"control,":[45],"annotation":[46,108,154,168,218],"assessment":[48,66],"capabilities":[49],"detected":[52],"loci.":[54,71],"Our":[55],"CRISPRloci":[56,119,207],"server":[57,73],"provides":[58],"first":[60],"resource":[61],"for":[62,103,178,212],"prediction":[64,89],"all":[68,91,158],"possible":[69],"integrates":[74],"series":[76],"advanced":[78],"Machine":[79],"Learning":[80],"within":[82],"seamless":[84],"web":[85],"interface":[86],"featuring:":[87],"(i)":[88],"arrays":[93],"correct":[96],"orientation;":[97],"(ii)":[98],"definition":[99],"leaders":[102],"each":[104],"locus;":[105],"(iii)":[107],"cas":[110,156],"genes":[111],"their":[113,189],"unambiguous":[114],"classification.":[115],"As":[116],"result,":[118],"able":[121],"to":[122,180],"accurately":[123],"determine":[124],"array":[127],"associated":[129],"information,":[130],"such":[131],"as:":[132],"Cas":[134],"subtypes;":[135],"cassette":[136],"boundaries;":[137],"accuracy":[138],"repeat":[141],"structure,":[142],"orientation":[143],"leader":[145],"sequence;":[146],"virus-host":[147],"interactions;":[148],"self-targeting;":[149],"as":[150,152],"well":[151],"genes,":[157],"which":[160],"have":[161],"been":[162],"missing":[163],"from":[164],"tools.":[166],"This":[167],"presented":[170],"an":[172,182],"interactive":[173],"interface,":[174],"making":[175],"it":[176],"easy":[177],"scientists":[179],"gain":[181],"overview":[183],"system":[187,214],"organism":[190],"interest.":[192],"Predictions":[193],"also":[195],"rendered":[196],"GFF":[198],"format,":[199],"enabling":[200],"in-depth":[201],"genome":[202],"browser":[203],"inspection.":[204,225],"In":[205],"summary,":[206],"constitutes":[208],"full":[210],"suite":[211],"characterization":[215],"that":[216],"offers":[217],"previously":[220],"available":[221],"after":[223]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2021-06-22T00:00:00"}
