{"id":"https://openalex.org/W3134089816","doi":"https://doi.org/10.1093/nar/gkab411","title":"RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats","display_name":"RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats","publication_year":2021,"publication_date":"2021-04-30","ids":{"openalex":"https://openalex.org/W3134089816","doi":"https://doi.org/10.1093/nar/gkab411","mag":"3134089816","pmid":"https://pubmed.ncbi.nlm.nih.gov/34019658"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab411","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab411","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W597/38841904/gkab411.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/W1/W597/38841904/gkab411.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062432564","display_name":"Bilal Shaikh","orcid":"https://orcid.org/0000-0001-5801-5510"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bilal Shaikh","raw_affiliation_strings":["Icahn Institute for Data Science & Genomic Technology and Department of Genetics & Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA"],"affiliations":[{"raw_affiliation_string":"Icahn Institute for Data Science & Genomic Technology and Department of Genetics & Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056433619","display_name":"Gnaneswara Marupilla","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gnaneswara Marupilla","raw_affiliation_strings":["Center for Cell Analysis and Modeling, University of Connecticut School of Medicine, 263 Farmington Avenue, Farmington, CT 06030, USA"],"affiliations":[{"raw_affiliation_string":"Center for Cell Analysis and Modeling, University of Connecticut School of Medicine, 263 Farmington Avenue, Farmington, CT 06030, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074143910","display_name":"Michael Wilson","orcid":"https://orcid.org/0000-0001-5892-6074"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mike Wilson","raw_affiliation_strings":["Center for Cell Analysis and Modeling, University of Connecticut School of Medicine, 263 Farmington Avenue, Farmington, CT 06030, USA"],"affiliations":[{"raw_affiliation_string":"Center for Cell Analysis and Modeling, University of Connecticut School of Medicine, 263 Farmington Avenue, Farmington, CT 06030, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107139754","display_name":"Michael L. Blinov","orcid":"https://orcid.org/0000-0002-9363-9705"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael L Blinov","raw_affiliation_strings":["Center for Cell Analysis and Modeling, University of Connecticut School of Medicine, 263 Farmington Avenue, Farmington, CT 06030, USA"],"affiliations":[{"raw_affiliation_string":"Center for Cell Analysis and Modeling, University of Connecticut School of Medicine, 263 Farmington Avenue, Farmington, CT 06030, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066544731","display_name":"Ion I. Moraru","orcid":"https://orcid.org/0000-0002-3746-9676"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ion\u00a0I Moraru","raw_affiliation_strings":["Center for Cell Analysis and Modeling, University of Connecticut School of Medicine, 263 Farmington Avenue, Farmington, CT 06030, USA"],"affiliations":[{"raw_affiliation_string":"Center for Cell Analysis and Modeling, University of Connecticut School of Medicine, 263 Farmington Avenue, Farmington, CT 06030, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016750554","display_name":"Jonathan R. Karr","orcid":"https://orcid.org/0000-0002-2605-5080"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jonathan R Karr","raw_affiliation_strings":["Icahn Institute for Data Science & Genomic Technology and Department of Genetics & Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA"],"affiliations":[{"raw_affiliation_string":"Icahn Institute for Data Science & Genomic Technology and Department of Genetics & Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5016750554","https://openalex.org/A5066544731"],"corresponding_institution_ids":["https://openalex.org/I140172145","https://openalex.org/I98704320"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.5419,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.82766682,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"49","issue":"W1","first_page":"W597","last_page":"W602"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7515014410018921},{"id":"https://openalex.org/keywords/extensibility","display_name":"Extensibility","score":0.7355657815933228},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.6280953884124756},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.5150144100189209},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5106111168861389},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4876188337802887},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.43742379546165466},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.43247976899147034},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3635074496269226},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3589550256729126},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.33071160316467285},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.31340357661247253},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24956101179122925},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1759244203567505},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13900291919708252}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7515014410018921},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.7355657815933228},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.6280953884124756},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.5150144100189209},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5106111168861389},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4876188337802887},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.43742379546165466},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.43247976899147034},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3635074496269226},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3589550256729126},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.33071160316467285},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.31340357661247253},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24956101179122925},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1759244203567505},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13900291919708252},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkab411","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab411","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W597/38841904/gkab411.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:34019658","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34019658","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8262693","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8262693","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab411","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab411","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W597/38841904/gkab411.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1993729073","display_name":null,"funder_award_id":"R24GM137787","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5694878234","display_name":null,"funder_award_id":"GM137787","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6618852487","display_name":null,"funder_award_id":"P41EB023912","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6732895847","display_name":null,"funder_award_id":"EB023912","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3134089816.pdf","grobid_xml":"https://content.openalex.org/works/W3134089816.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1991303552","https://openalex.org/W1991339919","https://openalex.org/W2048465561","https://openalex.org/W2068779004","https://openalex.org/W2081781433","https://openalex.org/W2096951208","https://openalex.org/W2097319997","https://openalex.org/W2103454055","https://openalex.org/W2121490181","https://openalex.org/W2123783513","https://openalex.org/W2127950479","https://openalex.org/W2129325583","https://openalex.org/W2175715045","https://openalex.org/W2215816474","https://openalex.org/W2303100661","https://openalex.org/W2560264276","https://openalex.org/W2580869787","https://openalex.org/W2627830512","https://openalex.org/W2791048175","https://openalex.org/W2884300959","https://openalex.org/W2950613784","https://openalex.org/W2952117952","https://openalex.org/W2988361147","https://openalex.org/W3048575781","https://openalex.org/W3080133182","https://openalex.org/W4230101557","https://openalex.org/W6696196953","https://openalex.org/W6770460946"],"related_works":["https://openalex.org/W1948607442","https://openalex.org/W3004004161","https://openalex.org/W2044615423","https://openalex.org/W4247766898","https://openalex.org/W4244765761","https://openalex.org/W2361584951","https://openalex.org/W2365327041","https://openalex.org/W4225348249","https://openalex.org/W31122515","https://openalex.org/W2466086502"],"abstract_inverted_index":{"Comprehensive,":[0],"predictive":[1,18,172],"computational":[2],"models":[3,19],"have":[4],"significant":[5],"potential":[6],"for":[7,51,78,82,102,148],"science,":[8],"bioengineering,":[9],"and":[10,42,58,63,74,85,131,134,142,151,165],"medicine.":[11],"One":[12],"promising":[13],"way":[14],"to":[15,21,72,92,127,139],"achieve":[16],"more":[17,171],"is":[20],"combine":[22],"submodels":[23,35],"of":[24,32,55,66,107,119,170],"multiple":[25,30,39],"subsystems.":[26],"To":[27,87],"capture":[28],"the":[29,61,168],"scales":[31],"biology,":[33],"these":[34,56,67,89],"will":[36,160],"likely":[37],"require":[38],"modeling":[40],"frameworks":[41,57,130,141],"simulation":[43,120],"algorithms.":[44,59,143],"Several":[45],"community":[46,111],"resources":[47,68,90,123],"are":[48],"already":[49],"available":[50],"working":[52],"with":[53],"many":[54],"However,":[60],"variety":[62],"sheer":[64],"number":[65],"make":[69,88,136],"it":[70],"challenging":[71],"find":[73],"use":[75],"appropriate":[76],"tools":[77],"each":[79],"model,":[80],"especially":[81],"novice":[83],"modelers":[84],"experimentalists.":[86],"easier":[91],"use,":[93],"we":[94],"developed":[95],"RunBioSimulations":[96,109,126,137,144,159],"(https://run.biosimulations.org),":[97],"a":[98,104,115],"single":[99],"web":[100],"application":[101],"executing":[103],"broad":[105],"range":[106],"models.":[108,173],"leverages":[110],"resources,":[112],"including":[113],"BioSimulators,":[114],"new":[116],"open":[117],"registry":[118],"tools.":[121],"These":[122],"currently":[124],"enable":[125],"execute":[128],"nine":[129],"44":[132],"algorithms,":[133],"they":[135],"extensible":[138],"additional":[140],"also":[145],"provides":[146],"features":[147],"sharing":[149],"simulations":[150],"interactively":[152],"visualizing":[153],"their":[154],"results.":[155],"We":[156],"anticipate":[157],"that":[158],"foster":[161],"reproducibility,":[162],"stimulate":[163],"collaboration,":[164],"ultimately":[166],"facilitate":[167],"creation":[169]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":4}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
