{"id":"https://openalex.org/W3164856426","doi":"https://doi.org/10.1093/nar/gkab407","title":"G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers","display_name":"G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers","publication_year":2021,"publication_date":"2021-05-04","ids":{"openalex":"https://openalex.org/W3164856426","doi":"https://doi.org/10.1093/nar/gkab407","mag":"3164856426","pmid":"https://pubmed.ncbi.nlm.nih.gov/34037802"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab407","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W228/38842405/gkab407.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/W1/W228/38842405/gkab407.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103082007","display_name":"Shuai Zeng","orcid":"https://orcid.org/0000-0001-7632-427X"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuai Zeng","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO\u00a065211, USA","Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO\u00a065211, USA"],"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079677902","display_name":"Ziting Mao","orcid":null},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ziting Mao","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO\u00a065211, USA","Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO\u00a065211, USA"],"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016791068","display_name":"Yijie Ren","orcid":"https://orcid.org/0000-0002-4867-2338"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yijie Ren","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO\u00a065211, USA","Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO\u00a065211, USA"],"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003943520","display_name":"Duolin Wang","orcid":"https://orcid.org/0000-0003-1649-460X"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Duolin Wang","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO\u00a065211, USA","Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO\u00a065211, USA"],"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082428303","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0002-4809-0514"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dong Xu","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO\u00a065211, USA","Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO\u00a065211, USA","MU Institute for Data Science and Informatics, University of Missouri, Columbia, MO\u00a065211, USA"],"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"MU Institute for Data Science and Informatics, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071079252","display_name":"Trupti Joshi","orcid":"https://orcid.org/0000-0001-8944-4924"},"institutions":[{"id":"https://openalex.org/I2800649613","display_name":"University of Missouri Health System","ror":"https://ror.org/03yp8z857","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2800649613"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Trupti Joshi","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO\u00a065211, USA","Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO\u00a065211, USA","Department of Health Management and Informatics, University of Missouri, Columbia, MO\u00a065211, USA","MU Institute for Data Science and Informatics, University of Missouri, Columbia, MO\u00a065211, USA"],"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Health Management and Informatics, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I2800649613","https://openalex.org/I76835614"]},{"raw_affiliation_string":"MU Institute for Data Science and Informatics, University of Missouri, Columbia, MO\u00a065211, USA","institution_ids":["https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5071079252"],"corresponding_institution_ids":["https://openalex.org/I2800649613","https://openalex.org/I76835614"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.1554,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.94459191,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"49","issue":"W1","first_page":"W228","last_page":"W236"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12571","display_name":"Soybean genetics and cultivation","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6252575516700745},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5829175114631653},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.5735598802566528},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.5640196800231934},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5441946983337402},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5310324430465698},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47253918647766113},{"id":"https://openalex.org/keywords/phenomics","display_name":"Phenomics","score":0.44567230343818665},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44004225730895996},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4389902353286743},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.43420636653900146},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.40293484926223755},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.35767465829849243},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.17896470427513123},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14685192704200745},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.13597992062568665},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09255614876747131}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6252575516700745},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5829175114631653},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.5735598802566528},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.5640196800231934},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5441946983337402},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5310324430465698},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47253918647766113},{"id":"https://openalex.org/C98108635","wikidata":"https://www.wikidata.org/wiki/Q6497275","display_name":"Phenomics","level":5,"score":0.44567230343818665},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44004225730895996},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4389902353286743},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.43420636653900146},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.40293484926223755},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.35767465829849243},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.17896470427513123},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14685192704200745},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.13597992062568665},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09255614876747131},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkab407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab407","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W228/38842405/gkab407.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:34037802","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34037802","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8262736","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8262736","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab407","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W228/38842405/gkab407.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2568166937","display_name":null,"funder_award_id":"IOS-1546873","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3799111281","display_name":null,"funder_award_id":"1920-152-0131-C","funder_id":"https://openalex.org/F4320313191","funder_display_name":"United Soybean Board"},{"id":"https://openalex.org/G5864663670","display_name":null,"funder_award_id":"IOS-1444448","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7975266290","display_name":null,"funder_award_id":"R35-GM126985","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320313191","display_name":"United Soybean Board","ror":"https://ror.org/03az66838"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3164856426.pdf","grobid_xml":"https://content.openalex.org/works/W3164856426.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1928998639","https://openalex.org/W2048635991","https://openalex.org/W2064013109","https://openalex.org/W2075417464","https://openalex.org/W2090950329","https://openalex.org/W2103017472","https://openalex.org/W2108583185","https://openalex.org/W2149992227","https://openalex.org/W2213151699","https://openalex.org/W2235409271","https://openalex.org/W2607746504","https://openalex.org/W2617322460","https://openalex.org/W2775447739","https://openalex.org/W2887039631","https://openalex.org/W2962851944","https://openalex.org/W2964350391","https://openalex.org/W2981502071","https://openalex.org/W3095583226","https://openalex.org/W3096828292","https://openalex.org/W6685133223","https://openalex.org/W6694260854"],"related_works":["https://openalex.org/W4249881829","https://openalex.org/W2953048636","https://openalex.org/W304886144","https://openalex.org/W4387031483","https://openalex.org/W2918339067","https://openalex.org/W2150403567","https://openalex.org/W2389242864","https://openalex.org/W4250803711","https://openalex.org/W4234342421","https://openalex.org/W2909040123"],"abstract_inverted_index":{"G2PDeep":[0,79,184],"is":[1,186,195],"an":[2,60],"open-access":[3],"web":[4,62],"server,":[5],"which":[6],"provides":[7,49,81],"a":[8,50,82,117],"deep-learning":[9,57,193],"framework":[10],"for":[11,53,170],"quantitative":[12,38,109,137],"phenotype":[13,39,110,138],"prediction":[14],"and":[15,31,42,64,92,111,121,132,164,173],"discovery":[16],"of":[17,40,84],"genomics":[18],"markers.":[19],"It":[20,48],"uses":[21],"zygosity":[22],"or":[23],"single":[24],"nucleotide":[25],"polymorphism":[26],"(SNP)":[27],"information":[28],"from":[29],"plants":[30],"animals":[32],"as":[33],"the":[34,77,89,94,97,122,145,148,181],"input":[35],"to":[36,55,87],"predict":[37],"interest":[41],"genomic":[43,112],"markers":[44,113],"associated":[45],"with":[46,68,155],"phenotype.":[47],"one-stop-shop":[51],"platform":[52],"researchers":[54],"create":[56],"models":[58,67,102],"through":[59],"interactive":[61],"interface":[63],"train":[65],"these":[66],"uploaded":[69],"data,":[70],"using":[71,116],"high-performance":[72],"computing":[73],"resources":[74],"plugged":[75],"at":[76,189,197],"backend.":[78],"also":[80,177],"series":[83],"informative":[85],"interfaces":[86],"monitor":[88],"training":[90],"process":[91],"compare":[93],"performance":[95,135],"among":[96],"trained":[98,101,119],"models.":[99],"The":[100,108,183,191],"can":[103],"then":[104],"be":[105],"deployed":[106],"automatically.":[107],"are":[114,124],"predicted":[115],"user-selected":[118],"model":[120,128,194],"results":[123],"visualized.":[125],"Our":[126],"state-of-the-art":[127],"has":[129,176],"been":[130,178],"benchmarked":[131],"demonstrated":[133],"competitive":[134],"in":[136],"predictions":[139],"by":[140],"other":[141],"researchers.":[142],"In":[143],"addition,":[144],"server":[146,185],"integrates":[147],"soybean":[149],"nested":[150],"association":[151],"mapping":[152],"(SoyNAM)":[153],"dataset":[154,169],"five":[156],"phenotypes,":[157],"including":[158],"grain":[159],"yield,":[160],"height,":[161],"moisture,":[162],"oil,":[163],"protein.":[165],"A":[166],"publicly":[167,187],"available":[168,188,196],"seed":[171],"protein":[172],"oil":[174],"content":[175],"integrated":[179],"into":[180],"server.":[182],"http://g2pdeep.org.":[190],"Python-based":[192],"https://github.com/shuaizengMU/G2PDeep_model.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
