{"id":"https://openalex.org/W3163279211","doi":"https://doi.org/10.1093/nar/gkab394","title":"OmicsAnalyst: a comprehensive web-based platform for visual analytics of multi-omics data","display_name":"OmicsAnalyst: a comprehensive web-based platform for visual analytics of multi-omics data","publication_year":2021,"publication_date":"2021-04-29","ids":{"openalex":"https://openalex.org/W3163279211","doi":"https://doi.org/10.1093/nar/gkab394","mag":"3163279211"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab394","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab394","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W476/38841826/gkab394.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/W1/W476/38841826/gkab394.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110918844","display_name":"Guangyan Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Guangyan Zhou","raw_affiliation_strings":["Institute of Parasitology, McGill University, Montreal, Quebec, Canada"],"affiliations":[{"raw_affiliation_string":"Institute of Parasitology, McGill University, Montreal, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040084733","display_name":"Jessica Ewald","orcid":"https://orcid.org/0000-0002-7555-736X"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jessica Ewald","raw_affiliation_strings":["Department of Natural Resource Sciences, McGill University, Montreal, Quebec, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Natural Resource Sciences, McGill University, Montreal, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073663029","display_name":"Jianguo Xia","orcid":"https://orcid.org/0000-0003-2040-2624"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Jianguo Xia","raw_affiliation_strings":["Department of Animal Science, McGill University, Montreal, Quebec, Canada","Institute of Parasitology, McGill University, Montreal, Quebec, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Animal Science, McGill University, Montreal, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Institute of Parasitology, McGill University, Montreal, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5073663029"],"corresponding_institution_ids":["https://openalex.org/I5023651"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.5295,"has_fulltext":false,"cited_by_count":96,"citation_normalized_percentile":{"value":0.9715793,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"49","issue":"W1","first_page":"W476","last_page":"W482"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9684000015258789,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9631999731063843,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.7265821099281311},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.7013288736343384},{"id":"https://openalex.org/keywords/personalization","display_name":"Personalization","score":0.6541917324066162},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.6081410050392151},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5747829079627991},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5703691840171814},{"id":"https://openalex.org/keywords/univariate","display_name":"Univariate","score":0.559817910194397},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.45170629024505615},{"id":"https://openalex.org/keywords/data-analysis","display_name":"Data analysis","score":0.4449208676815033},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4361627697944641},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.408652126789093},{"id":"https://openalex.org/keywords/multivariate-statistics","display_name":"Multivariate statistics","score":0.3580036163330078},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2080337107181549},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.20605403184890747}],"concepts":[{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.7265821099281311},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.7013288736343384},{"id":"https://openalex.org/C183003079","wikidata":"https://www.wikidata.org/wiki/Q1000371","display_name":"Personalization","level":2,"score":0.6541917324066162},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.6081410050392151},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5747829079627991},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5703691840171814},{"id":"https://openalex.org/C199163554","wikidata":"https://www.wikidata.org/wiki/Q1681619","display_name":"Univariate","level":3,"score":0.559817910194397},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.45170629024505615},{"id":"https://openalex.org/C175801342","wikidata":"https://www.wikidata.org/wiki/Q1988917","display_name":"Data analysis","level":2,"score":0.4449208676815033},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4361627697944641},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.408652126789093},{"id":"https://openalex.org/C161584116","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate statistics","level":2,"score":0.3580036163330078},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2080337107181549},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.20605403184890747},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkab394","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab394","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W476/38841826/gkab394.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:escholarship.mcgill.ca:cn69m9111","is_oa":false,"landing_page_url":"https://escholarship.mcgill.ca/concern/articles/cn69m9111","pdf_url":null,"source":{"id":"https://openalex.org/S4306401568","display_name":"eScholarship@McGill (McGill)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5023651","host_organization_name":"McGill University","host_organization_lineage":["https://openalex.org/I5023651"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/nar/article/49/W1/W476/6279835?login=true","raw_type":"Article"},{"id":"pmh:oai:escholarship.mcgill.ca:kd17d0198","is_oa":true,"landing_page_url":"https://escholarship.mcgill.ca/concern/articles/kd17d0198","pdf_url":null,"source":{"id":"https://openalex.org/S4306401568","display_name":"eScholarship@McGill (McGill)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5023651","host_organization_name":"McGill University","host_organization_lineage":["https://openalex.org/I5023651"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8262745","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8262745","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab394","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab394","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W476/38841826/gkab394.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3163279211.pdf","grobid_xml":"https://content.openalex.org/works/W3163279211.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1968667083","https://openalex.org/W1987219048","https://openalex.org/W2026769496","https://openalex.org/W2057580979","https://openalex.org/W2096918186","https://openalex.org/W2106742477","https://openalex.org/W2130324133","https://openalex.org/W2155158051","https://openalex.org/W2163250554","https://openalex.org/W2165874743","https://openalex.org/W2170376772","https://openalex.org/W2611138580","https://openalex.org/W2624135745","https://openalex.org/W2624701078","https://openalex.org/W2752229394","https://openalex.org/W2770707670","https://openalex.org/W2807572295","https://openalex.org/W2808845633","https://openalex.org/W2809990446","https://openalex.org/W2884724578","https://openalex.org/W2906107882","https://openalex.org/W2913710075","https://openalex.org/W2950245999","https://openalex.org/W2950985821","https://openalex.org/W2952143471","https://openalex.org/W2954876467","https://openalex.org/W2972689486","https://openalex.org/W2982655131","https://openalex.org/W3120515035","https://openalex.org/W3121022319","https://openalex.org/W6647295979","https://openalex.org/W6684578312","https://openalex.org/W6685147020","https://openalex.org/W6757792797","https://openalex.org/W6759146993","https://openalex.org/W6764327261"],"related_works":["https://openalex.org/W2153940791","https://openalex.org/W3037164970","https://openalex.org/W3127482518","https://openalex.org/W2138646726","https://openalex.org/W3037487054","https://openalex.org/W2186165905","https://openalex.org/W3081541487","https://openalex.org/W3081898781","https://openalex.org/W3151677261","https://openalex.org/W2094554679"],"abstract_inverted_index":{"Abstract":[0],"Data":[1],"analysis":[2,68,95,117],"and":[3,36,44,75,82,105,112,132,137,159],"interpretation":[4],"remain":[5],"a":[6,17,26,42],"critical":[7],"bottleneck":[8],"in":[9,41,86,139],"current":[10],"multi-omics":[11,34,53,172],"studies.":[12],"Here,":[13],"we":[14],"introduce":[15],"OmicsAnalyst,":[16],"user-friendly,":[18],"web-based":[19],"platform":[20],"that":[21],"allows":[22],"users":[23,71,98,120],"to":[24,78,127,167],"perform":[25],"wide":[27],"range":[28],"of":[29,52],"well-established":[30,169],"data-driven":[31],"approaches":[32,56],"for":[33,154,171],"integration,":[35],"visually":[37],"explore":[38,83,106,133],"their":[39,84,107],"results":[40,108],"clear":[43],"meaningful":[45],"manner.":[46],"To":[47],"help":[48],"navigate":[49],"complex":[50],"landscapes":[51],"analysis,":[54],"these":[55],"are":[57,149],"organized":[58],"into":[59],"three":[60,145],"visual":[61,146,176],"analytics":[62,147],"tracks:":[63],"(i)":[64],"the":[65,92,114,164],"correlation":[66],"network":[67],"track,":[69,96,118],"where":[70,97,119],"choose":[72,121],"among":[73,122],"univariate":[74],"multivariate":[76,125],"methods":[77,170],"identify":[79],"important":[80],"features":[81],"relationships":[85],"2D":[87],"or":[88],"3D":[89,141],"networks;":[90],"(ii)":[91],"cluster":[93],"heatmap":[94],"apply":[99],"several":[100,123],"cutting-edge":[101],"multi-view":[102],"clustering":[103],"algorithms":[104],"via":[109,174],"interactive":[110,140],"heatmaps;":[111],"(iii)":[113],"dimension":[115],"reduction":[116],"recent":[124],"techniques":[126],"reveal":[128],"global":[129],"data":[130],"structures,":[131],"corresponding":[134],"scores,":[135],"loadings":[136],"biplots":[138],"scatter":[142],"plots.":[143],"The":[144],"tracks":[148],"equipped":[150],"with":[151],"comprehensive":[152],"options":[153],"parameter":[155],"customization,":[156],"view":[157],"customization":[158],"targeted":[160],"analysis.":[161],"OmicsAnalyst":[162],"lowers":[163],"access":[165],"barriers":[166],"many":[168],"integration":[173],"novel":[175],"analytics.":[177],"It":[178],"is":[179],"freely":[180],"available":[181],"at":[182],"https://www.omicsanalyst.ca.":[183]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":29},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":25},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2021-05-24T00:00:00"}
