{"id":"https://openalex.org/W3164507799","doi":"https://doi.org/10.1093/nar/gkab385","title":"LigAdvisor: a versatile and user-friendly web-platform for drug design","display_name":"LigAdvisor: a versatile and user-friendly web-platform for drug design","publication_year":2021,"publication_date":"2021-04-27","ids":{"openalex":"https://openalex.org/W3164507799","doi":"https://doi.org/10.1093/nar/gkab385","mag":"3164507799"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab385","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab385","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W326/38841713/gkab385.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/W1/W326/38841713/gkab385.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014912634","display_name":"Luca Pinzi","orcid":"https://orcid.org/0000-0001-5572-2121"},"institutions":[{"id":"https://openalex.org/I122346577","display_name":"University of Modena and Reggio Emilia","ror":"https://ror.org/02d4c4y02","country_code":"IT","type":"education","lineage":["https://openalex.org/I122346577"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca Pinzi","raw_affiliation_strings":["Department of Life Sciences, University of Modena and Reggio Emilia, Modena\u00a041125, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Life Sciences, University of Modena and Reggio Emilia, Modena\u00a041125, Italy","institution_ids":["https://openalex.org/I122346577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047242993","display_name":"Annachiara Tinivella","orcid":"https://orcid.org/0000-0003-2182-9267"},"institutions":[{"id":"https://openalex.org/I122346577","display_name":"University of Modena and Reggio Emilia","ror":"https://ror.org/02d4c4y02","country_code":"IT","type":"education","lineage":["https://openalex.org/I122346577"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Annachiara Tinivella","raw_affiliation_strings":["Clinical and Experimental Medicine, PhD Program, University of Modena and Reggio Emilia, Modena 41125, Italy","Department of Life Sciences, University of Modena and Reggio Emilia, Modena\u00a041125, Italy"],"affiliations":[{"raw_affiliation_string":"Clinical and Experimental Medicine, PhD Program, University of Modena and Reggio Emilia, Modena 41125, Italy","institution_ids":["https://openalex.org/I122346577"]},{"raw_affiliation_string":"Department of Life Sciences, University of Modena and Reggio Emilia, Modena\u00a041125, Italy","institution_ids":["https://openalex.org/I122346577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036760548","display_name":"Luca Gagliardelli","orcid":"https://orcid.org/0000-0001-5977-1078"},"institutions":[{"id":"https://openalex.org/I122346577","display_name":"University of Modena and Reggio Emilia","ror":"https://ror.org/02d4c4y02","country_code":"IT","type":"education","lineage":["https://openalex.org/I122346577"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca Gagliardelli","raw_affiliation_strings":["Department of Engineering \u201cEnzo Ferrari\u201d, University of Modena and Reggio Emilia, Modena\u00a041125, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Engineering \u201cEnzo Ferrari\u201d, University of Modena and Reggio Emilia, Modena\u00a041125, Italy","institution_ids":["https://openalex.org/I122346577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085808966","display_name":"Domenico Beneventano","orcid":"https://orcid.org/0000-0001-6616-1753"},"institutions":[{"id":"https://openalex.org/I122346577","display_name":"University of Modena and Reggio Emilia","ror":"https://ror.org/02d4c4y02","country_code":"IT","type":"education","lineage":["https://openalex.org/I122346577"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Domenico Beneventano","raw_affiliation_strings":["Department of Engineering \u201cEnzo Ferrari\u201d, University of Modena and Reggio Emilia, Modena\u00a041125, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Engineering \u201cEnzo Ferrari\u201d, University of Modena and Reggio Emilia, Modena\u00a041125, Italy","institution_ids":["https://openalex.org/I122346577"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066566738","display_name":"Giulio Rastelli","orcid":"https://orcid.org/0000-0002-2474-0607"},"institutions":[{"id":"https://openalex.org/I122346577","display_name":"University of Modena and Reggio Emilia","ror":"https://ror.org/02d4c4y02","country_code":"IT","type":"education","lineage":["https://openalex.org/I122346577"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Giulio Rastelli","raw_affiliation_strings":["Department of Life Sciences, University of Modena and Reggio Emilia, Modena\u00a041125, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Life Sciences, University of Modena and Reggio Emilia, Modena\u00a041125, Italy","institution_ids":["https://openalex.org/I122346577"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5066566738"],"corresponding_institution_ids":["https://openalex.org/I122346577"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3904,"currency":"EUR","value_usd":4210},"fwci":2.564,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.90743073,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"49","issue":"W1","first_page":"W326","last_page":"W335"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.898101270198822},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.8040202856063843},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.6026703119277954},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.6021536588668823},{"id":"https://openalex.org/keywords/chembl","display_name":"chEMBL","score":0.5763605833053589},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.563687801361084},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.49061480164527893},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.48726096749305725},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.47776496410369873},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.38216713070869446},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.36883455514907837},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3406323194503784},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2969273328781128},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2707599401473999},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.26568883657455444},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23247870802879333},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.10752218961715698}],"concepts":[{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.898101270198822},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.8040202856063843},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.6026703119277954},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.6021536588668823},{"id":"https://openalex.org/C63222358","wikidata":"https://www.wikidata.org/wiki/Q6120337","display_name":"chEMBL","level":3,"score":0.5763605833053589},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.563687801361084},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.49061480164527893},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.48726096749305725},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.47776496410369873},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38216713070869446},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.36883455514907837},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3406323194503784},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2969273328781128},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2707599401473999},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.26568883657455444},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23247870802879333},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.10752218961715698},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkab385","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab385","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W326/38841713/gkab385.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:iris.unimore.it:11380/1251750","is_oa":true,"landing_page_url":"http://hdl.handle.net/11380/1251750","pdf_url":"http://hdl.handle.net/11380/1251750","source":{"id":"https://openalex.org/S4306400718","display_name":"IRIS UNIMORE (University of Modena and Reggio Emilia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122346577","host_organization_name":"University of Modena and Reggio Emilia","host_organization_lineage":["https://openalex.org/I122346577"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.uniecampus.it:11389/69806","is_oa":false,"landing_page_url":"https://hdl.handle.net/11389/69806","pdf_url":null,"source":{"id":"https://openalex.org/S4306400077","display_name":"IRIS eCampus Telematic University (Universit\u00e0 degli Studi eCampus)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I167322064","host_organization_name":"Universit\u00e0 degli Studi eCampus","host_organization_lineage":["https://openalex.org/I167322064"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8262749","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8262749","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab385","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab385","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W326/38841713/gkab385.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3164507799.pdf","grobid_xml":"https://content.openalex.org/works/W3164507799.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W1530167222","https://openalex.org/W1835740130","https://openalex.org/W1973462822","https://openalex.org/W1976156018","https://openalex.org/W1981214699","https://openalex.org/W1985593098","https://openalex.org/W2009015643","https://openalex.org/W2013126815","https://openalex.org/W2024993723","https://openalex.org/W2025816743","https://openalex.org/W2068320203","https://openalex.org/W2080754816","https://openalex.org/W2120869341","https://openalex.org/W2130479394","https://openalex.org/W2131272506","https://openalex.org/W2163025055","https://openalex.org/W2170419109","https://openalex.org/W2246954848","https://openalex.org/W2327079070","https://openalex.org/W2402506318","https://openalex.org/W2512620329","https://openalex.org/W2554073607","https://openalex.org/W2558999090","https://openalex.org/W2590907701","https://openalex.org/W2598265731","https://openalex.org/W2604527271","https://openalex.org/W2606217927","https://openalex.org/W2611425558","https://openalex.org/W2612436700","https://openalex.org/W2619948933","https://openalex.org/W2767891136","https://openalex.org/W2885426709","https://openalex.org/W2894600215","https://openalex.org/W2896002881","https://openalex.org/W2902800472","https://openalex.org/W2945199349","https://openalex.org/W2945842918","https://openalex.org/W2950860419","https://openalex.org/W2971801381","https://openalex.org/W2987928072","https://openalex.org/W2993071249","https://openalex.org/W2996724914","https://openalex.org/W3006508031","https://openalex.org/W3010058077","https://openalex.org/W3017154096","https://openalex.org/W3046419426","https://openalex.org/W3094084473","https://openalex.org/W3097145107","https://openalex.org/W3103314130","https://openalex.org/W3112376646","https://openalex.org/W4240082606","https://openalex.org/W6770414484"],"related_works":["https://openalex.org/W2155958387","https://openalex.org/W2029912875","https://openalex.org/W4387572939","https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4233725430","https://openalex.org/W3087749121","https://openalex.org/W4399111094"],"abstract_inverted_index":{"Abstract":[0],"Although":[1],"several":[2],"tools":[3,68],"facilitating":[4],"in":[5,53,79,110,160],"silico":[6],"drug":[7,54,64,128,132,162,170],"design":[8,32,65,171],"are":[9,13],"available,":[10],"their":[11,174,187],"results":[12,148],"usually":[14,58],"difficult":[15],"to":[16,26,74,85,126],"integrate":[17],"with":[18,149],"publicly":[19,88,191],"available":[20,89,192],"information":[21,108,159],"or":[22],"require":[23,59],"further":[24],"processing":[25],"be":[27],"fully":[28],"exploited.":[29],"The":[30],"rational":[31],"of":[33,40,62,145,158,179],"multi-target":[34],"ligands":[35],"(polypharmacology)":[36],"and":[37,69,93,118,137,181,185],"the":[38],"repositioning":[39],"known":[41],"drugs":[42],"towards":[43],"unmet":[44],"therapeutic":[45],"needs":[46],"(drug":[47],"repurposing)":[48],"have":[49],"raised":[50],"increasing":[51],"attention":[52],"discovery,":[55],"although":[56],"they":[57,83],"careful":[60],"planning":[61],"tailored":[63],"strategies.":[66],"Computational":[67],"data-driven":[70,104],"approaches":[71],"can":[72,166],"help":[73],"reveal":[75],"novel":[76],"valuable":[77],"opportunities":[78],"these":[80,98],"contexts,":[81],"as":[82,131],"enable":[84],"efficiently":[86],"mine":[87],"chemical,":[90],"biological,":[91],"clinical,":[92],"disease-related":[94],"data.":[95],"Based":[96],"on":[97,173],"premises,":[99],"we":[100],"developed":[101],"LigAdvisor,":[102],"a":[103,154],"webserver":[105],"which":[106],"integrates":[107],"reported":[109],"DrugBank,":[111],"Protein":[112],"Data":[113],"Bank,":[114],"UniProt,":[115],"Clinical":[116],"Trials":[117],"Therapeutic":[119],"Target":[120],"Database":[121],"into":[122],"an":[123],"intuitive":[124],"platform,":[125],"facilitate":[127],"discovery":[129,163],"tasks":[130,172],"repurposing,":[133],"polypharmacology,":[134],"target":[135],"fishing":[136],"profiling.":[138],"As":[139],"designed,":[140],"LigAdvisor":[141,189],"enables":[142],"easy":[143],"integration":[144],"similarity":[146],"estimation":[147],"clinical":[150],"data,":[151],"thereby":[152],"allowing":[153],"more":[155],"efficient":[156],"exploitation":[157],"different":[161],"contexts.":[164],"Users":[165],"also":[167],"develop":[168],"customizable":[169],"own":[175],"molecules,":[176],"by":[177],"means":[178],"ligand-":[180],"target-based":[182],"search":[183],"modes,":[184],"download":[186],"results.":[188],"is":[190],"at":[193],"https://ligadvisor.unimore.it/.":[194]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2026-03-30T08:08:38.191290","created_date":"2025-10-10T00:00:00"}
