{"id":"https://openalex.org/W3163390259","doi":"https://doi.org/10.1093/nar/gkab375","title":"ProteinTools: a toolkit to analyze protein structures","display_name":"ProteinTools: a toolkit to analyze protein structures","publication_year":2021,"publication_date":"2021-04-26","ids":{"openalex":"https://openalex.org/W3163390259","doi":"https://doi.org/10.1093/nar/gkab375","mag":"3163390259","pmid":"https://pubmed.ncbi.nlm.nih.gov/34019657"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab375","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab375","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W559/38842415/gkab375.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/W1/W559/38842415/gkab375.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004684799","display_name":"Noelia Ferruz","orcid":"https://orcid.org/0000-0003-4172-8201"},"institutions":[{"id":"https://openalex.org/I54009628","display_name":"University of Bayreuth","ror":"https://ror.org/0234wmv40","country_code":"DE","type":"education","lineage":["https://openalex.org/I54009628"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Noelia Ferruz","raw_affiliation_strings":["Department of Biochemistry, University of Bayreuth, 95447 Bayreuth, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Bayreuth, 95447 Bayreuth, Germany","institution_ids":["https://openalex.org/I54009628"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084421039","display_name":"Steffen Schmidt","orcid":"https://orcid.org/0000-0001-9077-6010"},"institutions":[{"id":"https://openalex.org/I54009628","display_name":"University of Bayreuth","ror":"https://ror.org/0234wmv40","country_code":"DE","type":"education","lineage":["https://openalex.org/I54009628"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Steffen Schmidt","raw_affiliation_strings":["Computational Biochemistry, University of Bayreuth, 95447 Bayreuth, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Biochemistry, University of Bayreuth, 95447 Bayreuth, Germany","institution_ids":["https://openalex.org/I54009628"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063262156","display_name":"Birte H\u00f6cker","orcid":"https://orcid.org/0000-0002-8250-9462"},"institutions":[{"id":"https://openalex.org/I54009628","display_name":"University of Bayreuth","ror":"https://ror.org/0234wmv40","country_code":"DE","type":"education","lineage":["https://openalex.org/I54009628"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Birte H\u00f6cker","raw_affiliation_strings":["Department of Biochemistry, University of Bayreuth, 95447 Bayreuth, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Bayreuth, 95447 Bayreuth, Germany","institution_ids":["https://openalex.org/I54009628"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5004684799","https://openalex.org/A5063262156"],"corresponding_institution_ids":["https://openalex.org/I54009628"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3808,"currency":"EUR","value_usd":4106},"fwci":6.7512,"has_fulltext":true,"cited_by_count":129,"citation_normalized_percentile":{"value":0.98002612,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"49","issue":"W1","first_page":"W559","last_page":"W566"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.7189984321594238},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.673170268535614},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6582608819007874},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.643937349319458},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6071380376815796},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5912362933158875},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.562074601650238},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5083288550376892},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.49454113841056824},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4620586633682251},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4560537040233612},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4461817443370819},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4421805739402771},{"id":"https://openalex.org/keywords/mashup","display_name":"Mashup","score":0.4282214939594269},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.33900654315948486},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3382062613964081},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.25490671396255493},{"id":"https://openalex.org/keywords/web-modeling","display_name":"Web modeling","score":0.25388991832733154},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17321336269378662}],"concepts":[{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.7189984321594238},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.673170268535614},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6582608819007874},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.643937349319458},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6071380376815796},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5912362933158875},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.562074601650238},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5083288550376892},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.49454113841056824},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4620586633682251},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4560537040233612},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4461817443370819},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4421805739402771},{"id":"https://openalex.org/C196126337","wikidata":"https://www.wikidata.org/wiki/Q821080","display_name":"Mashup","level":4,"score":0.4282214939594269},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.33900654315948486},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3382062613964081},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.25490671396255493},{"id":"https://openalex.org/C130436687","wikidata":"https://www.wikidata.org/wiki/Q7978591","display_name":"Web modeling","level":3,"score":0.25388991832733154},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17321336269378662},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkab375","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab375","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W559/38842415/gkab375.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:34019657","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34019657","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:eref.uni-bayreuth.de:70604","is_oa":false,"landing_page_url":"https://eref.uni-bayreuth.de/70604/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196442","display_name":"ERef Bayreuth (University of Bayreuth)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I54009628","host_organization_name":"University of Bayreuth","host_organization_lineage":["https://openalex.org/I54009628"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Artikel in einer Zeitschrift"},{"id":"pmh:oai:pubmedcentral.nih.gov:8262690","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8262690","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab375","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab375","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W559/38842415/gkab375.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2625829991","display_name":null,"funder_award_id":"647548","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G559455286","display_name":null,"funder_award_id":"764434","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7450196404","display_name":null,"funder_award_id":"94747","funder_id":"https://openalex.org/F4320320882","funder_display_name":"Volkswagen Foundation"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320320882","display_name":"Volkswagen Foundation","ror":"https://ror.org/03bsmfz84"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3163390259.pdf","grobid_xml":"https://content.openalex.org/works/W3163390259.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1517566065","https://openalex.org/W1517622624","https://openalex.org/W1586416850","https://openalex.org/W1971003485","https://openalex.org/W1971251199","https://openalex.org/W1996166962","https://openalex.org/W2006823304","https://openalex.org/W2006831136","https://openalex.org/W2019951137","https://openalex.org/W2029667189","https://openalex.org/W2031367292","https://openalex.org/W2036770968","https://openalex.org/W2038242205","https://openalex.org/W2047399603","https://openalex.org/W2061734959","https://openalex.org/W2061843940","https://openalex.org/W2068353165","https://openalex.org/W2076742999","https://openalex.org/W2088933990","https://openalex.org/W2121627241","https://openalex.org/W2122339645","https://openalex.org/W2123768693","https://openalex.org/W2132629607","https://openalex.org/W2147988069","https://openalex.org/W2151550848","https://openalex.org/W2161072217","https://openalex.org/W2167590372","https://openalex.org/W2169941775","https://openalex.org/W2292998093","https://openalex.org/W2330799739","https://openalex.org/W2568226856","https://openalex.org/W2623172571","https://openalex.org/W2767957539","https://openalex.org/W2774178591","https://openalex.org/W2790811106","https://openalex.org/W2893131760","https://openalex.org/W2897212621","https://openalex.org/W2921614595","https://openalex.org/W2944930475","https://openalex.org/W2971733377","https://openalex.org/W2980170804","https://openalex.org/W2999044305","https://openalex.org/W3018526736","https://openalex.org/W3106352682","https://openalex.org/W4239973457","https://openalex.org/W6684759573"],"related_works":["https://openalex.org/W2154270547","https://openalex.org/W3002405669","https://openalex.org/W66507862","https://openalex.org/W2112107765","https://openalex.org/W2341203197","https://openalex.org/W1851202668","https://openalex.org/W87798777","https://openalex.org/W2377354346","https://openalex.org/W4234342421","https://openalex.org/W2909040123"],"abstract_inverted_index":{"The":[0,146],"experimental":[1],"characterization":[2],"and":[3,13,73,128],"computational":[4],"prediction":[5],"of":[6,18,65,104,108],"protein":[7,19,53,143],"structures":[8,20],"has":[9],"become":[10,112,136],"increasingly":[11],"rapid":[12],"precise.":[14],"However,":[15],"the":[16,63,79,91,101,106,117,141],"analysis":[17],"often":[21],"requires":[22],"researchers":[23],"to":[24,100,120],"use":[25],"several":[26],"software":[27],"packages":[28],"or":[29,86],"web":[30,49,97,147],"servers,":[31],"which":[32],"complicates":[33],"matters.":[34],"To":[35],"provide":[36],"long-established":[37],"structural":[38],"analyses":[39],"in":[40,124],"a":[41,48,83,125],"modern,":[42],"easy-to-use":[43],"interface,":[44,130],"we":[45,131],"implemented":[46],"ProteinTools,":[47,105],"server":[50,148],"toolkit":[51,139],"for":[52,140],"structure":[54],"analysis.":[55],"ProteinTools":[56,134],"gathers":[57],"four":[58],"applications":[59,110],"so":[60],"far,":[61],"namely":[62],"identification":[64],"hydrophobic":[66],"clusters,":[67],"hydrogen":[68],"bond":[69],"networks,":[70],"salt":[71],"bridges,":[72],"contact":[74],"maps.":[75],"In":[76],"all":[77],"cases,":[78],"input":[80],"data":[81],"is":[82,93,149],"PDB":[84],"identifier":[85],"an":[87,94,113,137],"uploaded":[88],"structure,":[89],"whereas":[90],"output":[92],"interactive":[95],"dynamic":[96],"interface.":[98],"Thanks":[99],"modular":[102],"nature":[103],"addition":[107],"new":[109],"will":[111,135],"easy":[114],"task.":[115],"Given":[116],"current":[118],"need":[119],"have":[121],"these":[122],"tools":[123],"single,":[126],"fast,":[127],"interpretable":[129],"believe":[132],"that":[133],"essential":[138],"wider":[142],"research":[144],"community.":[145],"available":[150],"at":[151],"https://proteintools.uni-bayreuth.de.":[152]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":36},{"year":2024,"cited_by_count":39},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":4}],"updated_date":"2026-04-04T08:04:53.788161","created_date":"2025-10-10T00:00:00"}
