{"id":"https://openalex.org/W3163595068","doi":"https://doi.org/10.1093/nar/gkab354","title":"PredictProtein - Predicting Protein Structure and Function for 29 Years","display_name":"PredictProtein - Predicting Protein Structure and Function for 29 Years","publication_year":2021,"publication_date":"2021-05-11","ids":{"openalex":"https://openalex.org/W3163595068","doi":"https://doi.org/10.1093/nar/gkab354","mag":"3163595068","pmid":"https://pubmed.ncbi.nlm.nih.gov/33999203"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab354","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab354","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W535/38842151/gkab354.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/W1/W535/38842151/gkab354.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035722235","display_name":"Michael Bernhofer","orcid":"https://orcid.org/0000-0001-6103-3306"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Bernhofer","raw_affiliation_strings":["TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","TUM Graduate School CeDoSIA, Boltzmannstr 11, 85748 Garching, Germany"],"affiliations":[{"raw_affiliation_string":"TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"TUM Graduate School CeDoSIA, Boltzmannstr 11, 85748 Garching, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088531553","display_name":"Christian Dallago","orcid":"https://orcid.org/0000-0003-4650-6181"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christian Dallago","raw_affiliation_strings":["TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","TUM Graduate School CeDoSIA, Boltzmannstr 11, 85748 Garching, Germany"],"affiliations":[{"raw_affiliation_string":"TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"TUM Graduate School CeDoSIA, Boltzmannstr 11, 85748 Garching, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004559243","display_name":"Tim Karl","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tim Karl","raw_affiliation_strings":["TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany"],"affiliations":[{"raw_affiliation_string":"TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088017410","display_name":"Venkata Satagopam","orcid":"https://orcid.org/0000-0002-6532-5880"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Venkata Satagopam","raw_affiliation_strings":["ELIXIR Luxembourg (ELIXIR-LU) Node, University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg"],"affiliations":[{"raw_affiliation_string":"ELIXIR Luxembourg (ELIXIR-LU) Node, University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]},{"raw_affiliation_string":"Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075726670","display_name":"Michael Heinzinger","orcid":"https://orcid.org/0000-0002-9601-3580"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Heinzinger","raw_affiliation_strings":["TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","TUM Graduate School CeDoSIA, Boltzmannstr 11, 85748 Garching, Germany"],"affiliations":[{"raw_affiliation_string":"TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"TUM Graduate School CeDoSIA, Boltzmannstr 11, 85748 Garching, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025018140","display_name":"Maria Littmann","orcid":"https://orcid.org/0000-0001-8533-8163"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maria Littmann","raw_affiliation_strings":["TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","TUM Graduate School CeDoSIA, Boltzmannstr 11, 85748 Garching, Germany"],"affiliations":[{"raw_affiliation_string":"TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"TUM Graduate School CeDoSIA, Boltzmannstr 11, 85748 Garching, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002122017","display_name":"Tobias Olenyi","orcid":"https://orcid.org/0000-0002-6315-0458"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias Olenyi","raw_affiliation_strings":["TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany"],"affiliations":[{"raw_affiliation_string":"TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012630135","display_name":"Jiajun Qiu","orcid":"https://orcid.org/0000-0003-1790-8536"},"institutions":[{"id":"https://openalex.org/I4210097066","display_name":"Shanghai Ninth People's Hospital","ror":"https://ror.org/010826a91","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210097066"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN","DE"],"is_corresponding":false,"raw_author_name":"Jiajun Qiu","raw_affiliation_strings":["Department of Otolaryngology Head & Neck Surgery, The Ninth People's Hospital & Ear Institute, School of Medicine & Shanghai Key Laboratory of Translational Medicine on Ear and Nose Diseases, Shanghai Jiao Tong University, Shanghai, China","TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Otolaryngology Head & Neck Surgery, The Ninth People's Hospital & Ear Institute, School of Medicine & Shanghai Key Laboratory of Translational Medicine on Ear and Nose Diseases, Shanghai Jiao Tong University, Shanghai, China","institution_ids":["https://openalex.org/I4210097066","https://openalex.org/I183067930"]},{"raw_affiliation_string":"TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062361890","display_name":"Konstantin Sch\u00fctze","orcid":"https://orcid.org/0000-0002-3957-412X"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Konstantin Sch\u00fctze","raw_affiliation_strings":["TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany"],"affiliations":[{"raw_affiliation_string":"TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010067073","display_name":"Guy Yachdav","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Guy Yachdav","raw_affiliation_strings":["TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany"],"affiliations":[{"raw_affiliation_string":"TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057094793","display_name":"Haim Ashkenazy","orcid":"https://orcid.org/0000-0002-5079-4684"},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]},{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["DE","IL"],"is_corresponding":false,"raw_author_name":"Haim Ashkenazy","raw_affiliation_strings":["Department of Molecular Biology, Max Planck Institute for Developmental Biology, T\u00fcbingen, Germany","The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, 69978 Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Max Planck Institute for Developmental Biology, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458"]},{"raw_affiliation_string":"The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, 69978 Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037671858","display_name":"Nir Ben\u2010Tal","orcid":"https://orcid.org/0000-0001-6901-832X"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Nir Ben-Tal","raw_affiliation_strings":["Department of Biochemistry & Molecular Biology, George S. Wise Faculty of Life Sciences, Tel Aviv University, 69978 Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry & Molecular Biology, George S. Wise Faculty of Life Sciences, Tel Aviv University, 69978 Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089912529","display_name":"Yana Bromberg","orcid":"https://orcid.org/0000-0002-8351-0844"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yana Bromberg","raw_affiliation_strings":["Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ 08901, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ 08901, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108748492","display_name":"Tatyana Goldberg","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tatyana Goldberg","raw_affiliation_strings":["TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany"],"affiliations":[{"raw_affiliation_string":"TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048342687","display_name":"L\u00e1szl\u00f3 Kaj\u00e1n","orcid":"https://orcid.org/0000-0001-8624-5970"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Laszlo Kajan","raw_affiliation_strings":["Roche Polska Sp. z o.o., Domaniewska 39B, 02\u2013672 Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Roche Polska Sp. z o.o., Domaniewska 39B, 02\u2013672 Warsaw, Poland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061545147","display_name":"S\u00e9an O\u2019Donoghue","orcid":"https://orcid.org/0000-0001-9520-6623"},"institutions":[{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sean O\u2019Donoghue","raw_affiliation_strings":["Garvan Institute of Medical Research, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Garvan Institute of Medical Research, Sydney, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008166270","display_name":"Chris Sander","orcid":"https://orcid.org/0000-0001-6059-6270"},"institutions":[{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Sander","raw_affiliation_strings":["Broad Institute of MIT and Harvard, Boston, MA 02142, USA","Department of Cell Biology, Harvard Medical School, Boston, MA 02215, USA","Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA 02215, USA"],"affiliations":[{"raw_affiliation_string":"Broad Institute of MIT and Harvard, Boston, MA 02142, USA","institution_ids":["https://openalex.org/I107606265"]},{"raw_affiliation_string":"Department of Cell Biology, Harvard Medical School, Boston, MA 02215, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA 02215, USA","institution_ids":["https://openalex.org/I4210117453"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070513438","display_name":"Andrea Schafferhans","orcid":"https://orcid.org/0000-0002-5569-6186"},"institutions":[{"id":"https://openalex.org/I309496635","display_name":"Weihenstephan-Triesdorf University of Applied Sciences","ror":"https://ror.org/00gzkxz88","country_code":"DE","type":"education","lineage":["https://openalex.org/I309496635"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andrea Schafferhans","raw_affiliation_strings":["HSWT (Hochschule Weihenstephan Triesdorf | University of Applied Sciences), Department of Bioengineering Sciences, Am Hofgarten 10, 85354 Freising, Germany","TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany"],"affiliations":[{"raw_affiliation_string":"HSWT (Hochschule Weihenstephan Triesdorf | University of Applied Sciences), Department of Bioengineering Sciences, Am Hofgarten 10, 85354 Freising, Germany","institution_ids":["https://openalex.org/I309496635"]},{"raw_affiliation_string":"TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048927341","display_name":"Avner Schlessinger","orcid":"https://orcid.org/0000-0003-4007-7814"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Avner Schlessinger","raw_affiliation_strings":["Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108621736","display_name":"Gerrit Vriend","orcid":null},"institutions":[{"id":"https://openalex.org/I3130377600","display_name":"Bicol University","ror":"https://ror.org/04w686e65","country_code":"PH","type":"education","lineage":["https://openalex.org/I3130377600"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Gerrit Vriend","raw_affiliation_strings":["BIPS, Poblacion Baco, Mindoro, Philippines"],"affiliations":[{"raw_affiliation_string":"BIPS, Poblacion Baco, Mindoro, Philippines","institution_ids":["https://openalex.org/I3130377600"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016012053","display_name":"Milot Mirdita","orcid":"https://orcid.org/0000-0001-8637-6719"},"institutions":[{"id":"https://openalex.org/I4210131661","display_name":"Max Planck Institute for Biophysical Chemistry","ror":"https://ror.org/03e76ya46","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210131661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Milot Mirdita","raw_affiliation_strings":["Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry, G\u00f6ttingen, Germany"],"affiliations":[{"raw_affiliation_string":"Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I4210131661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042744881","display_name":"Piotr Gawron","orcid":"https://orcid.org/0000-0002-9328-8052"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Piotr Gawron","raw_affiliation_strings":["Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg"],"affiliations":[{"raw_affiliation_string":"Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043795951","display_name":"Wei Gu","orcid":"https://orcid.org/0000-0003-3951-6680"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Wei Gu","raw_affiliation_strings":["ELIXIR Luxembourg (ELIXIR-LU) Node, University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg"],"affiliations":[{"raw_affiliation_string":"ELIXIR Luxembourg (ELIXIR-LU) Node, University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]},{"raw_affiliation_string":"Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084571997","display_name":"Yohan Jarosz","orcid":"https://orcid.org/0000-0003-2047-0897"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Yohan Jarosz","raw_affiliation_strings":["ELIXIR Luxembourg (ELIXIR-LU) Node, University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg"],"affiliations":[{"raw_affiliation_string":"ELIXIR Luxembourg (ELIXIR-LU) Node, University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]},{"raw_affiliation_string":"Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003450111","display_name":"Christophe Trefois","orcid":"https://orcid.org/0000-0002-8991-6810"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Christophe Trefois","raw_affiliation_strings":["ELIXIR Luxembourg (ELIXIR-LU) Node, University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg"],"affiliations":[{"raw_affiliation_string":"ELIXIR Luxembourg (ELIXIR-LU) Node, University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]},{"raw_affiliation_string":"Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019985343","display_name":"Martin Steinegger","orcid":"https://orcid.org/0000-0001-8781-9753"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Martin Steinegger","raw_affiliation_strings":["Artificial Intelligence Institute, Seoul National University, Seoul, South Korea","School of Biological Sciences, Seoul National University, Seoul, South Korea"],"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Institute, Seoul National University, Seoul, South Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"School of Biological Sciences, Seoul National University, Seoul, South Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079833473","display_name":"Reinhard Schneider","orcid":"https://orcid.org/0000-0002-8278-1618"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Reinhard Schneider","raw_affiliation_strings":["ELIXIR Luxembourg (ELIXIR-LU) Node, University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg"],"affiliations":[{"raw_affiliation_string":"ELIXIR Luxembourg (ELIXIR-LU) Node, University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]},{"raw_affiliation_string":"Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, House of Biomedicine II, 6 avenue du Swing, L-4367 Belvaux, Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064905883","display_name":"Burkhard Rost","orcid":"https://orcid.org/0000-0003-0179-8424"},"institutions":[{"id":"https://openalex.org/I4210137766","display_name":"Institute for Advanced Study","ror":"https://ror.org/03xg85719","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210137766"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Burkhard Rost","raw_affiliation_strings":["Institute for Advanced Study (TUM-IAS), Lichtenbergstr. 2a, 85748 Garching/Munich, Germany","TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","TUM School of Life Sciences Weihenstephan (WZW), Alte Akademie 8, Freising, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Advanced Study (TUM-IAS), Lichtenbergstr. 2a, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I4210137766"]},{"raw_affiliation_string":"TUM (Technical University of Munich) Department of Informatics, Bioinformatics & Computational Biology - i12, Boltzmannstr 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"TUM School of Life Sciences Weihenstephan (WZW), Alte Akademie 8, Freising, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":8,"institutions_distinct_count":28,"corresponding_author_ids":["https://openalex.org/A5064905883","https://openalex.org/A5088531553"],"corresponding_institution_ids":["https://openalex.org/I4210137766","https://openalex.org/I62916508"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":2380,"currency":"EUR","value_usd":2566},"fwci":17.101,"has_fulltext":true,"cited_by_count":262,"citation_normalized_percentile":{"value":0.99626205,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"49","issue":"W1","first_page":"W535","last_page":"W540"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9510205984115601},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.579820990562439},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.42664724588394165},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31762176752090454}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9510205984115601},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.579820990562439},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.42664724588394165},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31762176752090454}],"mesh":[{"descriptor_ui":"D000086462","descriptor_name":"Coronavirus Nucleocapsid Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000086462","descriptor_name":"Coronavirus Nucleocapsid Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000086462","descriptor_name":"Coronavirus Nucleocapsid Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000086462","descriptor_name":"Coronavirus Nucleocapsid Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkab354","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab354","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W535/38842151/gkab354.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33999203","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33999203","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:mediatum.ub.tum.de:node/1737619","is_oa":true,"landing_page_url":"https://mediatum.ub.tum.de/1737619","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:orbilu.uni.lu:10993/47520","is_oa":true,"landing_page_url":"http://orbilu.uni.lu/handle/10993/47520","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research (2021)","raw_type":"peer reviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:8265159","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8265159","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:repository.ubn.ru.nl:2066/244283","is_oa":false,"landing_page_url":"https://repository.ubn.ru.nl/handle/2066/244283","pdf_url":null,"source":{"id":"https://openalex.org/S4306401067","display_name":"Radboud Repository (Radboud University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I145872427","host_organization_name":"Radboud University Nijmegen","host_organization_lineage":["https://openalex.org/I145872427"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 49, W1, pp. W535-W540","raw_type":"Article / Letter to editor"},{"id":"pmh:ru:oai:repository.ubn.ru.nl:2066/244283","is_oa":true,"landing_page_url":"http://hdl.handle.net/2066/244283","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 49, W535 - W540","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab354","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab354","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W535/38842151/gkab354.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G2088101978","display_name":null,"funder_award_id":"2019R1A6A1A10073437","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G4671512033","display_name":null,"funder_award_id":"685778","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G5931231857","display_name":null,"funder_award_id":"01IS17049","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6195863497","display_name":null,"funder_award_id":"450/16","funder_id":"https://openalex.org/F4320322252","funder_display_name":"Israel Science Foundation"},{"id":"https://openalex.org/G7525901750","display_name":null,"funder_award_id":"RO 1320/4-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8877558626","display_name":null,"funder_award_id":"NRF-2020M3A9G7103933","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320308269","display_name":"Alexander von Humboldt-Stiftung","ror":"https://ror.org/012kf4317"},{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320321292","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"},{"id":"https://openalex.org/F4320322596","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49"},{"id":"https://openalex.org/F4320323383","display_name":"Technische Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/02kkvpp62"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3163595068.pdf","grobid_xml":"https://content.openalex.org/works/W3163595068.grobid-xml"},"referenced_works_count":77,"referenced_works":["https://openalex.org/W1499450468","https://openalex.org/W1683278196","https://openalex.org/W1967580419","https://openalex.org/W1969080446","https://openalex.org/W1973035681","https://openalex.org/W1974188411","https://openalex.org/W1985818354","https://openalex.org/W1989235034","https://openalex.org/W1996073320","https://openalex.org/W2005800049","https://openalex.org/W2027383523","https://openalex.org/W2043359500","https://openalex.org/W2055043387","https://openalex.org/W2057289558","https://openalex.org/W2064515831","https://openalex.org/W2079882489","https://openalex.org/W2103132055","https://openalex.org/W2107158607","https://openalex.org/W2108491719","https://openalex.org/W2108984616","https://openalex.org/W2114886480","https://openalex.org/W2124707779","https://openalex.org/W2130479394","https://openalex.org/W2138217546","https://openalex.org/W2154479185","https://openalex.org/W2158714788","https://openalex.org/W2159128192","https://openalex.org/W2161922860","https://openalex.org/W2168621448","https://openalex.org/W2227395312","https://openalex.org/W2296335794","https://openalex.org/W2376573086","https://openalex.org/W2517405041","https://openalex.org/W2557595285","https://openalex.org/W2593184757","https://openalex.org/W2605996289","https://openalex.org/W2769882797","https://openalex.org/W2809141626","https://openalex.org/W2898402099","https://openalex.org/W2949342052","https://openalex.org/W2950374603","https://openalex.org/W2950954328","https://openalex.org/W2951149542","https://openalex.org/W2951599627","https://openalex.org/W2952209472","https://openalex.org/W2952317511","https://openalex.org/W2953008890","https://openalex.org/W2971227267","https://openalex.org/W2980789587","https://openalex.org/W2989608901","https://openalex.org/W2995514860","https://openalex.org/W3009202743","https://openalex.org/W3010198187","https://openalex.org/W3011792749","https://openalex.org/W3013098193","https://openalex.org/W3018120852","https://openalex.org/W3024553150","https://openalex.org/W3040739508","https://openalex.org/W3041304706","https://openalex.org/W3042271775","https://openalex.org/W3107034655","https://openalex.org/W3108457335","https://openalex.org/W3108943181","https://openalex.org/W3111174583","https://openalex.org/W3112376646","https://openalex.org/W3118936575","https://openalex.org/W3146944767","https://openalex.org/W3157437194","https://openalex.org/W3158236124","https://openalex.org/W3177500196","https://openalex.org/W3201299379","https://openalex.org/W4212774754","https://openalex.org/W4252388203","https://openalex.org/W6697144307","https://openalex.org/W6763868836","https://openalex.org/W6774662269","https://openalex.org/W6775844884"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"Since":[0],"1992":[1],"PredictProtein":[2,35,146],"(https://predictprotein.org)":[3],"is":[4],"a":[5,53,159],"one-stop":[6],"online":[7],"resource":[8],"for":[9,22,41,161,193],"protein":[10,42,54,66,80,88],"sequence":[11,55,62,93,123],"analysis":[12],"with":[13],"its":[14],"main":[15],"site":[16],"hosted":[17],"at":[18],"the":[19,37,58,115,119,162],"Luxembourg":[20],"Centre":[21],"Systems":[23],"Biomedicine":[24],"(LCSB)":[25],"and":[26,49,70,82,85,104,107,140,155,158,166,182,188],"queried":[27],"monthly":[28],"by":[29],"over":[30],"3,000":[31],"users":[32],"in":[33,68,196],"2020.":[34],"was":[36],"first":[38],"Internet":[39],"server":[40,59],"predictions.":[43],"It":[44],"pioneered":[45],"combining":[46],"evolutionary":[47],"information":[48],"machine":[50],"learning.":[51],"Given":[52],"as":[56],"input,":[57],"outputs":[60],"multiple":[61],"alignments,":[63],"predictions":[64,86,149,179],"of":[65,87,92,121,132,164],"structure":[67],"1D":[69],"2D":[71],"(secondary":[72],"structure,":[73],"solvent":[74],"accessibility,":[75],"transmembrane":[76],"segments,":[77],"disordered":[78],"regions,":[79],"flexibility,":[81],"disulfide":[83],"bridges)":[84],"function":[89],"(functional":[90],"effects":[91],"variation":[94],"or":[95,171],"point":[96],"mutations,":[97],"Gene":[98],"Ontology":[99],"(GO)":[100],"terms,":[101],"subcellular":[102],"localization,":[103],"protein-,":[105],"RNA-,":[106],"DNA":[108],"binding).":[109],"PredictProtein's":[110],"infrastructure":[111],"has":[112],"moved":[113],"to":[114,176,180],"LCSB":[116],"increasing":[117],"throughput;":[118],"use":[120],"MMseqs2":[122],"search":[124],"reduced":[125],"runtime":[126],"five-fold":[127],"(apparently":[128],"without":[129],"lowering":[130],"performance":[131],"prediction":[133,142,163],"methods);":[134],"user":[135],"interface":[136],"elements":[137],"improved":[138],"usability,":[139],"new":[141],"methods":[143,189],"were":[144],"added.":[145],"recently":[147],"included":[148],"from":[150],"deep":[151],"learning":[152],"embeddings":[153],"(GO":[154],"secondary":[156],"structure)":[157],"method":[160],"proteins":[165],"residues":[167],"binding":[168],"DNA,":[169],"RNA,":[170],"other":[172],"proteins.":[173],"PredictProtein.org":[174],"aspires":[175],"provide":[177],"reliable":[178],"computational":[181],"experimental":[183],"biologists":[184],"alike.":[185],"All":[186],"scripts":[187],"are":[190],"freely":[191],"available":[192],"offline":[194],"execution":[195],"high-throughput":[197],"settings.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":49},{"year":2024,"cited_by_count":72},{"year":2023,"cited_by_count":54},{"year":2022,"cited_by_count":59},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":2}],"updated_date":"2026-03-05T09:29:38.588285","created_date":"2025-10-10T00:00:00"}
