{"id":"https://openalex.org/W3162801148","doi":"https://doi.org/10.1093/nar/gkab346","title":"The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols","display_name":"The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols","publication_year":2021,"publication_date":"2021-04-27","ids":{"openalex":"https://openalex.org/W3162801148","doi":"https://doi.org/10.1093/nar/gkab346","mag":"3162801148","pmid":"https://pubmed.ncbi.nlm.nih.gov/33978761"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab346","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab346","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W624/38842352/gkab346.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/W1/W624/38842352/gkab346.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082618105","display_name":"Denis Yuen","orcid":"https://orcid.org/0000-0002-6130-1021"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Denis Yuen","raw_affiliation_strings":["Adaptive Oncology, Ontario Institute for Cancer Research, Toronto, Ontario M5V 3S1, Canada"],"raw_orcid":"https://orcid.org/0000-0002-6130-1021","affiliations":[{"raw_affiliation_string":"Adaptive Oncology, Ontario Institute for Cancer Research, Toronto, Ontario M5V 3S1, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013122099","display_name":"Louise Cabansay","orcid":"https://orcid.org/0000-0002-1475-5979"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Louise Cabansay","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA"],"raw_orcid":"https://orcid.org/0000-0002-1475-5979","affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051419097","display_name":"Andrew Duncan","orcid":"https://orcid.org/0000-0001-6983-3201"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrew Duncan","raw_affiliation_strings":["Adaptive Oncology, Ontario Institute for Cancer Research, Toronto, Ontario M5V 3S1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Adaptive Oncology, Ontario Institute for Cancer Research, Toronto, Ontario M5V 3S1, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027195465","display_name":"Gary Luu","orcid":null},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Gary Luu","raw_affiliation_strings":["Adaptive Oncology, Ontario Institute for Cancer Research, Toronto, Ontario M5V 3S1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Adaptive Oncology, Ontario Institute for Cancer Research, Toronto, Ontario M5V 3S1, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085846818","display_name":"Gregory Hogue","orcid":null},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Gregory Hogue","raw_affiliation_strings":["Adaptive Oncology, Ontario Institute for Cancer Research, Toronto, Ontario M5V 3S1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Adaptive Oncology, Ontario Institute for Cancer Research, Toronto, Ontario M5V 3S1, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002172839","display_name":"Charles Overbeck","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Overbeck","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017363374","display_name":"Natalie Perez","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalie Perez","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046434617","display_name":"Walt Shands","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Walt Shands","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060402368","display_name":"David Steinberg","orcid":"https://orcid.org/0000-0001-6683-2270"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Steinberg","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025442164","display_name":"C. Reid","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chaz Reid","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066978670","display_name":"Nneka Olunwa","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nneka Olunwa","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066537541","display_name":"Richard L. Hansen","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Hansen","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028023787","display_name":"Elizabeth A. Sheets","orcid":"https://orcid.org/0000-0002-6335-4952"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elizabeth Sheets","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085616061","display_name":"Ash O\u2019Farrell","orcid":"https://orcid.org/0000-0003-4896-1858"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ash O\u2019Farrell","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032787244","display_name":"Kim Cullion","orcid":null},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kim Cullion","raw_affiliation_strings":["Adaptive Oncology, Ontario Institute for Cancer Research, Toronto, Ontario M5V 3S1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Adaptive Oncology, Ontario Institute for Cancer Research, Toronto, Ontario M5V 3S1, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040984959","display_name":"Brian D. O\u2019Connor","orcid":"https://orcid.org/0000-0002-7681-6415"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian\u00a0D O\u2019Connor","raw_affiliation_strings":["Data Sciences Platform, Broad Institute, Boston, MA 02142, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Sciences Platform, Broad Institute, Boston, MA 02142, USA","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061203088","display_name":"Benedict Paten","orcid":"https://orcid.org/0000-0001-8863-3539"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benedict Paten","raw_affiliation_strings":["UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA\u00a095060, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052076713","display_name":"Lincoln Stein","orcid":"https://orcid.org/0000-0002-1983-4588"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Lincoln Stein","raw_affiliation_strings":["Adaptive Oncology, Ontario Institute for Cancer Research, Toronto, Ontario M5V 3S1, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Adaptive Oncology, Ontario Institute for Cancer Research, Toronto, Ontario M5V 3S1, Canada","institution_ids":["https://openalex.org/I112260969"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":18,"corresponding_author_ids":["https://openalex.org/A5013122099","https://openalex.org/A5082618105"],"corresponding_institution_ids":["https://openalex.org/I112260969","https://openalex.org/I185103710"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":12.6405,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.98137705,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"49","issue":"W1","first_page":"W624","last_page":"W632"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8585395812988281},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.8009603023529053},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.652057945728302},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.6369634866714478},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5947981476783752},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.5035631060600281},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44221681356430054},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.42690715193748474},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.40335386991500854},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.24459215998649597},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11952891945838928}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8585395812988281},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.8009603023529053},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.652057945728302},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.6369634866714478},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5947981476783752},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.5035631060600281},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44221681356430054},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.42690715193748474},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.40335386991500854},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.24459215998649597},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11952891945838928},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054555","descriptor_name":"National Heart, Lung, and Blood Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054555","descriptor_name":"National Heart, Lung, and Blood Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054555","descriptor_name":"National Heart, Lung, and Blood Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054555","descriptor_name":"National Heart, Lung, and Blood Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054555","descriptor_name":"National Heart, Lung, and Blood Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054555","descriptor_name":"National Heart, Lung, and Blood Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054555","descriptor_name":"National Heart, Lung, and Blood Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054560","descriptor_name":"National Human Genome Research Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054560","descriptor_name":"National Human Genome Research Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054560","descriptor_name":"National Human Genome Research Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054560","descriptor_name":"National Human Genome Research Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054560","descriptor_name":"National Human Genome Research Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054560","descriptor_name":"National Human Genome Research Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054560","descriptor_name":"National Human Genome Research Institute (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkab346","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab346","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W624/38842352/gkab346.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33978761","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33978761","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8218198","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8218198","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab346","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab346","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W624/38842352/gkab346.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5699999928474426,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2711273080","display_name":null,"funder_award_id":"RFA-RM-17-026","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G2913826103","display_name":null,"funder_award_id":"PA-14-156","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3153889879","display_name":null,"funder_award_id":"5R01HG009737-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5608989710","display_name":null,"funder_award_id":"1 OT3 HL142481-01-01","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G6998204140","display_name":null,"funder_award_id":"OGI-168","funder_id":"https://openalex.org/F4320319905","funder_display_name":"Ontario Genomics Institute"}],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320314024","display_name":"Ontario Genomics","ror":null},{"id":"https://openalex.org/F4320319880","display_name":"Government of Canada","ror":"https://ror.org/010q4q527"},{"id":"https://openalex.org/F4320319905","display_name":"Ontario Genomics Institute","ror":"https://ror.org/00c68jz96"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3162801148.pdf","grobid_xml":"https://content.openalex.org/works/W3162801148.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W73403477","https://openalex.org/W1533109738","https://openalex.org/W1649645444","https://openalex.org/W1919257374","https://openalex.org/W2041971736","https://openalex.org/W2087507717","https://openalex.org/W2097464861","https://openalex.org/W2302501749","https://openalex.org/W2406493898","https://openalex.org/W2470289662","https://openalex.org/W2539403003","https://openalex.org/W2576576365","https://openalex.org/W2604622795","https://openalex.org/W2605897695","https://openalex.org/W2611603562","https://openalex.org/W2751416425","https://openalex.org/W2773787581","https://openalex.org/W2785694006","https://openalex.org/W2807738603","https://openalex.org/W2951092176","https://openalex.org/W2966750373","https://openalex.org/W2971928433","https://openalex.org/W3006500278","https://openalex.org/W3006653136","https://openalex.org/W3029928583","https://openalex.org/W3111336046","https://openalex.org/W3126160703","https://openalex.org/W4249759701","https://openalex.org/W6743437375","https://openalex.org/W6766881652"],"related_works":["https://openalex.org/W2093262417","https://openalex.org/W2123131699","https://openalex.org/W650116260","https://openalex.org/W2378329187","https://openalex.org/W4390790060","https://openalex.org/W2134191509","https://openalex.org/W3209454962","https://openalex.org/W79697243","https://openalex.org/W2314257840","https://openalex.org/W2365800294"],"abstract_inverted_index":{"Dockstore":[0,48,100,192],"(https://dockstore.org/)":[1],"is":[2,101],"an":[3],"open":[4],"source":[5,53],"platform":[6,17,65,114,178],"for":[7,66],"publishing,":[8],"sharing,":[9],"and":[10,14,34,57,83,128,141,176,182],"finding":[11],"bioinformatics":[12,46],"tools":[13,82,139],"workflows.":[15],"The":[16,76],"has":[18],"facilitated":[19],"large-scale":[20],"biomedical":[21],"research":[22],"collaborations":[23],"by":[24],"using":[25],"cloud":[26],"technologies":[27,59],"to":[28,60,68,94,147],"increase":[29],"the":[30,42,87,113,122,135,155,159,164,171,187],"Findability,":[31],"Accessibility,":[32],"Interoperability":[33],"Reusability":[35],"(FAIR)":[36],"of":[37,44,52,73,79,81,89,118,166,173,191],"computational":[38],"resources,":[39],"thereby":[40],"promoting":[41],"reproducibility":[43,190],"complex":[45],"analyses.":[47],"supports":[49],"a":[50,62,70,116,150],"variety":[51,117],"repositories,":[54],"analysis":[55,110,177],"frameworks,":[56],"language":[58],"provide":[61],"seamless":[63],"publishing":[64],"authors":[67],"create":[69],"centralized":[71],"catalogue":[72],"scientific":[74,189],"software.":[75],"ready-to-use":[77],"packaging":[78],"hundreds":[80],"workflows,":[84],"combined":[85],"with":[86],"implementation":[88],"interoperability":[90],"standards,":[91],"enables":[92],"users":[93],"launch":[95],"analyses":[96],"across":[97],"multiple":[98],"environments.":[99],"widely":[102],"used,":[103],"more":[104],"than":[105],"twenty-five":[106],"high-profile":[107],"organizations":[108],"share":[109],"collections":[111],"through":[112],"in":[115],"workflow":[119],"languages,":[120],"including":[121,163],"Broad":[123],"Institute's":[124],"GATK":[125],"best":[126],"practice":[127],"COVID-19":[129],"workflows":[130,133,142],"(WDL),":[131],"nf-core":[132],"(Nextflow),":[134],"Intergalactic":[136],"Workflow":[137],"Commission":[138],"(Galaxy),":[140],"from":[143],"Seven":[144],"Bridges":[145],"(CWL)":[146],"highlight":[148],"just":[149],"few.":[151],"Here":[152],"we":[153],"describe":[154],"improvements":[156],"made":[157],"over":[158],"last":[160],"four":[161],"years,":[162],"expansion":[165],"system":[167],"integrations":[168,179],"supporting":[169,180],"authors,":[170],"addition":[172],"collaboration":[174],"features":[175],"users,":[181],"other":[183],"enhancements":[184],"that":[185],"improve":[186],"overall":[188],"content.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":1}],"updated_date":"2026-06-10T14:10:52.464848","created_date":"2025-10-10T00:00:00"}
