{"id":"https://openalex.org/W3158075195","doi":"https://doi.org/10.1093/nar/gkab336","title":"LZerD webserver for pairwise and multiple protein\u2013protein docking","display_name":"LZerD webserver for pairwise and multiple protein\u2013protein docking","publication_year":2021,"publication_date":"2021-04-19","ids":{"openalex":"https://openalex.org/W3158075195","doi":"https://doi.org/10.1093/nar/gkab336","mag":"3158075195","pmid":"https://pubmed.ncbi.nlm.nih.gov/33963854"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab336","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab336","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W359/38841851/gkab336.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/W1/W359/38841851/gkab336.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078844851","display_name":"Charles Christoffer","orcid":"https://orcid.org/0000-0002-6163-6323"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Christoffer","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081386790","display_name":"Siyang Chen","orcid":"https://orcid.org/0000-0001-7471-4274"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Siyang Chen","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050757455","display_name":"Vijay Bharadwaj","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vijay Bharadwaj","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009655998","display_name":"Tunde Aderinwale","orcid":"https://orcid.org/0000-0003-3592-3844"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tunde Aderinwale","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042588389","display_name":"Vidhur Kumar","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vidhur Kumar","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034116439","display_name":"Matin Hormati","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matin Hormati","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062293219","display_name":"Daisuke Kihara","orcid":"https://orcid.org/0000-0003-4091-6614"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daisuke Kihara","raw_affiliation_strings":["Department of Biological Sciences, Purdue University, West Lafayette IN, 47907, USA","Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA","Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN\u00a047907, USA"],"raw_orcid":"https://orcid.org/0000-0003-4091-6614","affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Purdue University, West Lafayette IN, 47907, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN\u00a047907, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN\u00a047907, USA","institution_ids":["https://openalex.org/I219193219","https://openalex.org/I4210149717"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5062293219"],"corresponding_institution_ids":["https://openalex.org/I219193219","https://openalex.org/I4210149717"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.0752,"has_fulltext":false,"cited_by_count":104,"citation_normalized_percentile":{"value":0.96757697,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"49","issue":"W1","first_page":"W359","last_page":"W365"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.8540211915969849},{"id":"https://openalex.org/keywords/dock","display_name":"DOCK","score":0.7754755020141602},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7134181261062622},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.6661405563354492},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5676241517066956},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5524373650550842},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5365931987762451},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44786399602890015},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4269167184829712},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.4220772385597229},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3450257480144501},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3297887444496155},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3069910705089569},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.193086177110672},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15225562453269958},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11368194222450256},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09123453497886658}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.8540211915969849},{"id":"https://openalex.org/C93073132","wikidata":"https://www.wikidata.org/wiki/Q24726581","display_name":"DOCK","level":2,"score":0.7754755020141602},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7134181261062622},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.6661405563354492},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5676241517066956},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5524373650550842},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5365931987762451},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44786399602890015},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4269167184829712},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.4220772385597229},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3450257480144501},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3297887444496155},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3069910705089569},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.193086177110672},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15225562453269958},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11368194222450256},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09123453497886658},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015703","descriptor_name":"Antigens, CD","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015703","descriptor_name":"Antigens, CD","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015703","descriptor_name":"Antigens, CD","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015815","descriptor_name":"Cell Adhesion Molecules","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015815","descriptor_name":"Cell Adhesion Molecules","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015815","descriptor_name":"Cell Adhesion Molecules","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D050753","descriptor_name":"Enoyl-(Acyl-Carrier-Protein) Reductase (NADH)","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D050753","descriptor_name":"Enoyl-(Acyl-Carrier-Protein) Reductase (NADH)","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D050753","descriptor_name":"Enoyl-(Acyl-Carrier-Protein) Reductase (NADH)","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkab336","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab336","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W359/38841851/gkab336.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33963854","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33963854","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8262708","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8262708","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab336","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab336","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W359/38841851/gkab336.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2318254872","display_name":null,"funder_award_id":"T32 GM132024","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2919728590","display_name":null,"funder_award_id":"CMMI1825941","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4202522359","display_name":null,"funder_award_id":"R01GM123055","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6575698428","display_name":null,"funder_award_id":"DMS1614777","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6857722962","display_name":null,"funder_award_id":"R01 GM123055","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7241072156","display_name":null,"funder_award_id":"MCB1925643","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7346127582","display_name":null,"funder_award_id":"R01GM133840","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8003271620","display_name":null,"funder_award_id":"R01 GM133840","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320316710","display_name":"Purdue Institute for Drug Discovery","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W95014119","https://openalex.org/W1567067073","https://openalex.org/W1601270585","https://openalex.org/W2010535661","https://openalex.org/W2019691413","https://openalex.org/W2021374144","https://openalex.org/W2056252656","https://openalex.org/W2064383522","https://openalex.org/W2094262711","https://openalex.org/W2101980405","https://openalex.org/W2114714512","https://openalex.org/W2125677968","https://openalex.org/W2140522686","https://openalex.org/W2140574901","https://openalex.org/W2152301430","https://openalex.org/W2153983456","https://openalex.org/W2157991822","https://openalex.org/W2166496883","https://openalex.org/W2171778773","https://openalex.org/W2419381003","https://openalex.org/W2572080171","https://openalex.org/W2606353404","https://openalex.org/W2783728269","https://openalex.org/W2805748601","https://openalex.org/W2980678340","https://openalex.org/W2982719243","https://openalex.org/W2996827397","https://openalex.org/W3037945531","https://openalex.org/W4245532735"],"related_works":["https://openalex.org/W4282913408","https://openalex.org/W2945033221","https://openalex.org/W2098496318","https://openalex.org/W2145118195","https://openalex.org/W2107326055","https://openalex.org/W2803604922","https://openalex.org/W3118344282","https://openalex.org/W3040256181","https://openalex.org/W2055457867","https://openalex.org/W1768303176"],"abstract_inverted_index":{"Protein":[0],"complexes":[1],"are":[2],"involved":[3],"in":[4,8,82],"many":[5],"important":[6],"processes":[7],"living":[9],"cells.":[10],"To":[11],"understand":[12],"the":[13,23,27,50,74,80,83,114,138,159,164,176],"mechanisms":[14],"of":[15,26,52,90,137,180,183],"these":[16,53],"processes,":[17],"it":[18],"is":[19,168,190],"necessary":[20],"to":[21,47,63],"solve":[22],"3D":[24,109],"structures":[25,33,51,99,179],"protein":[28,31,67,105],"complexes.":[29,54],"When":[30],"complex":[32],"have":[34,76],"not":[35],"yet":[36],"been":[37],"determined":[38],"by":[39,73,125,129],"experiment,":[40],"protein-protein":[41],"docking":[42,68,124],"tools":[43],"can":[44,94,142],"be":[45],"used":[46],"computationally":[48],"model":[49],"Here,":[55],"we":[56],"present":[57],"a":[58,103,171],"webserver":[59,167,189],"which":[60],"provides":[61],"access":[62],"LZerD":[64,87,101,188],"and":[65,112,178],"Multi-LZerD":[66,93,121],"tools.":[69],"The":[70,166,187],"protocol":[71],"provided":[72],"server":[75],"performed":[77],"consistently":[78],"among":[79],"top":[81,184],"CAPRI":[84],"blind":[85],"evaluation.":[86],"docks":[88],"pairs":[89],"structures,":[91],"while":[92],"dock":[95],"three":[96],"or":[97,149,161],"more":[98],"simultaneously.":[100],"uses":[102],"soft":[104],"surface":[106],"representation":[107],"with":[108,170],"Zernike":[110],"descriptors":[111],"explores":[113],"binding":[115,181],"pose":[116],"space":[117],"using":[118],"geometric":[119],"hashing.":[120],"performs":[122],"multi-chain":[123],"combining":[126],"pairwise":[127],"solutions":[128],"LZerD.":[130],"Both":[131],"methods":[132],"output":[133],"full-atom":[134],"docked":[135],"models":[136],"input":[139,144],"proteins.":[140],"Users":[141],"also":[143],"distance":[145],"constraints":[146],"between":[147],"interacting":[148],"non-interacting":[150],"residues":[151,155],"as":[152,154],"well":[153],"that":[156,174],"locate":[157],"at":[158,192],"interface":[160],"far":[162],"from":[163],"interface.":[165],"equipped":[169],"user-friendly":[172],"panel":[173],"visualizes":[175],"distribution":[177],"poses":[182],"scoring":[185],"models.":[186],"available":[191],"https://lzerd.kiharalab.org.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":31},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
