{"id":"https://openalex.org/W3157320492","doi":"https://doi.org/10.1093/nar/gkab329","title":"ProteoSign v2: a faster and evolved user-friendly online tool for statistical analyses of differential proteomics","display_name":"ProteoSign v2: a faster and evolved user-friendly online tool for statistical analyses of differential proteomics","publication_year":2021,"publication_date":"2021-04-22","ids":{"openalex":"https://openalex.org/W3157320492","doi":"https://doi.org/10.1093/nar/gkab329","mag":"3157320492","pmid":"https://pubmed.ncbi.nlm.nih.gov/33963869"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab329","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab329","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W573/38842364/gkab329.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/W1/W573/38842364/gkab329.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030449831","display_name":"Evangelos Theodorakis","orcid":null},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","GR"],"is_corresponding":false,"raw_author_name":"Evangelos Theodorakis","raw_affiliation_strings":["Department of Informatics, Technical University of Munich, Boltzmannstr. 3, 85748 Garching, Germany","Division of Basic Sciences, University of Crete Medical School, Heraklion\u00a071110, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Technical University of Munich, Boltzmannstr. 3, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Division of Basic Sciences, University of Crete Medical School, Heraklion\u00a071110, Greece","institution_ids":["https://openalex.org/I142617266"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004541261","display_name":"Andreas Antonakis","orcid":null},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Andreas N Antonakis","raw_affiliation_strings":["Division of Basic Sciences, University of Crete Medical School, Heraklion\u00a071110, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Basic Sciences, University of Crete Medical School, Heraklion\u00a071110, Greece","institution_ids":["https://openalex.org/I142617266"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051241108","display_name":"Ismini Baltsavia","orcid":"https://orcid.org/0000-0002-1735-4468"},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Ismini Baltsavia","raw_affiliation_strings":["Division of Basic Sciences, University of Crete Medical School, Heraklion\u00a071110, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Basic Sciences, University of Crete Medical School, Heraklion\u00a071110, Greece","institution_ids":["https://openalex.org/I142617266"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088991393","display_name":"Georgios A. Pavlopoulos","orcid":"https://orcid.org/0000-0002-4577-8276"},"institutions":[{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Georgios\u00a0A Pavlopoulos","raw_affiliation_strings":["Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d, 34 Fleming Street, 16672\u00a0Vari, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Fundamental Biomedical Research, BSRC \u201cAlexander Fleming\u201d, 34 Fleming Street, 16672\u00a0Vari, Greece","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079383178","display_name":"Martina Samiotaki","orcid":"https://orcid.org/0000-0001-9952-0636"},"institutions":[{"id":"https://openalex.org/I6820528","display_name":"Alexander Fleming Biomedical Sciences Research Center","ror":"https://ror.org/013x0ky90","country_code":"GR","type":"facility","lineage":["https://openalex.org/I6820528"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Martina Samiotaki","raw_affiliation_strings":["Institute for Bioinnovation, BSRC \u201cAlexander Fleming\u201d, 34 Fleming Street, 16672\u00a0Vari, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioinnovation, BSRC \u201cAlexander Fleming\u201d, 34 Fleming Street, 16672\u00a0Vari, Greece","institution_ids":["https://openalex.org/I6820528"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063999924","display_name":"Grigoris D. Amoutzias","orcid":"https://orcid.org/0000-0001-5961-964X"},"institutions":[{"id":"https://openalex.org/I145722265","display_name":"University of Thessaly","ror":"https://ror.org/04v4g9h31","country_code":"GR","type":"education","lineage":["https://openalex.org/I145722265"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Grigoris\u00a0D Amoutzias","raw_affiliation_strings":["Bioinformatics Laboratory, Department of Biochemistry and Biotechnology, University of Thessaly, Larisa\u00a041500, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, Department of Biochemistry and Biotechnology, University of Thessaly, Larisa\u00a041500, Greece","institution_ids":["https://openalex.org/I145722265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102882884","display_name":"\u0398\u03b5\u03bf\u03b4\u03cc\u03c3\u03b9\u03bf\u03c2 \u0398\u03b5\u03bf\u03b4\u03bf\u03c3\u03af\u03bf\u03c5","orcid":"https://orcid.org/0000-0002-6151-1803"},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Theodosios Theodosiou","raw_affiliation_strings":["Division of Basic Sciences, University of Crete Medical School, Heraklion\u00a071110, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Basic Sciences, University of Crete Medical School, Heraklion\u00a071110, Greece","institution_ids":["https://openalex.org/I142617266"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067648833","display_name":"Oreste Acuto","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Oreste Acuto","raw_affiliation_strings":["Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX13RE, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX13RE, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019536071","display_name":"Georgios Efstathiou","orcid":"https://orcid.org/0000-0002-8245-9549"},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB","GR"],"is_corresponding":false,"raw_author_name":"Georgios Efstathiou","raw_affiliation_strings":["Division of Basic Sciences, University of Crete Medical School, Heraklion\u00a071110, Greece","Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX13RE, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Basic Sciences, University of Crete Medical School, Heraklion\u00a071110, Greece","institution_ids":["https://openalex.org/I142617266"]},{"raw_affiliation_string":"Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX13RE, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066939971","display_name":"Ioannis Iliopoulos","orcid":"https://orcid.org/0000-0002-9079-0565"},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Ioannis Iliopoulos","raw_affiliation_strings":["Division of Basic Sciences, University of Crete Medical School, Heraklion\u00a071110, Greece"],"raw_orcid":"https://orcid.org/0000-0002-9079-0565","affiliations":[{"raw_affiliation_string":"Division of Basic Sciences, University of Crete Medical School, Heraklion\u00a071110, Greece","institution_ids":["https://openalex.org/I142617266"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5066939971","https://openalex.org/A5102882884"],"corresponding_institution_ids":["https://openalex.org/I142617266"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.7239,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.91059244,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"49","issue":"W1","first_page":"W573","last_page":"W577"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.7394120693206787},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.7042405605316162},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6831499338150024},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4985005855560303},{"id":"https://openalex.org/keywords/upgrade","display_name":"Upgrade","score":0.49416258931159973},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44090884923934937},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.43174633383750916},{"id":"https://openalex.org/keywords/differential","display_name":"Differential (mechanical device)","score":0.4271159768104553},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4252296984195709},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3241746425628662},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21692219376564026},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.11422881484031677},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10086989402770996},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08958333730697632},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08388713002204895}],"concepts":[{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.7394120693206787},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.7042405605316162},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6831499338150024},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4985005855560303},{"id":"https://openalex.org/C2780615140","wikidata":"https://www.wikidata.org/wiki/Q920419","display_name":"Upgrade","level":2,"score":0.49416258931159973},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44090884923934937},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.43174633383750916},{"id":"https://openalex.org/C93226319","wikidata":"https://www.wikidata.org/wiki/Q193137","display_name":"Differential (mechanical device)","level":2,"score":0.4271159768104553},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4252296984195709},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3241746425628662},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21692219376564026},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.11422881484031677},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10086989402770996},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08958333730697632},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08388713002204895},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkab329","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab329","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W573/38842364/gkab329.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33963869","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33963869","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8262687","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8262687","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:ark:/13030/qt43520524","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt43520524","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/43520524","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, vol 49, iss W1","raw_type":"article"},{"id":"pmh:oai:ir.lib.uth.gr:11615/79672","is_oa":false,"landing_page_url":"http://hdl.handle.net/11615/79672","pdf_url":null,"source":{"id":"https://openalex.org/S4306400243","display_name":"University of Thessaly Institutional Repository (University of Thessaly)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I145722265","host_organization_name":"University of Thessaly","host_organization_lineage":["https://openalex.org/I145722265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research","raw_type":"journalArticle"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:53e56e9d-c785-4b9d-8256-ee1ab639f3d5","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:53e56e9d-c785-4b9d-8256-ee1ab639f3d5","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Jisc Publications Router","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab329","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab329","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W573/38842364/gkab329.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4399999976158142}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3157320492.pdf"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1920458132","https://openalex.org/W2011769238","https://openalex.org/W2048280438","https://openalex.org/W2066439792","https://openalex.org/W2080752012","https://openalex.org/W2114165700","https://openalex.org/W2114322774","https://openalex.org/W2120016245","https://openalex.org/W2121418514","https://openalex.org/W2132319659","https://openalex.org/W2134121980","https://openalex.org/W2137791378","https://openalex.org/W2140946052","https://openalex.org/W2147830145","https://openalex.org/W2147903531","https://openalex.org/W2176090022","https://openalex.org/W2178634736","https://openalex.org/W2183284444","https://openalex.org/W2336445683","https://openalex.org/W2463195069","https://openalex.org/W2497927769","https://openalex.org/W2508652771","https://openalex.org/W2522728811","https://openalex.org/W2614148745","https://openalex.org/W2802342298","https://openalex.org/W2944545583","https://openalex.org/W2998913628","https://openalex.org/W3039817761","https://openalex.org/W6726773513"],"related_works":["https://openalex.org/W1982829397","https://openalex.org/W2347437365","https://openalex.org/W2106414650","https://openalex.org/W1999412725","https://openalex.org/W4390205769","https://openalex.org/W2124137418","https://openalex.org/W2391458050","https://openalex.org/W3022402204","https://openalex.org/W2086860678","https://openalex.org/W2114732768"],"abstract_inverted_index":{"Bottom-up":[0],"proteomics":[1],"analyses":[2],"have":[3,92],"been":[4],"proved":[5],"over":[6],"the":[7,16,19,59,109,120,123,177,184,187,193],"last":[8],"years":[9],"to":[10,80],"be":[11],"a":[12,95,135,172,196],"powerful":[13],"tool":[14],"in":[15,49,85,112],"characterization":[17],"of":[18,40,61,87,115,122,138,176,186,195],"proteome":[20],"and":[21,27,170,190],"are":[22,65,78,83],"crucial":[23],"for":[24,58,102],"understanding":[25],"cellular":[26],"organism":[28],"behaviour.":[29],"Through":[30],"differential":[31,104],"proteomic":[32],"analysis":[33,60,106,175],"researchers":[34],"can":[35],"shed":[36],"light":[37],"on":[38,152],"groups":[39],"proteins":[41,44],"or":[42,52],"individual":[43],"that":[45],"play":[46],"key":[47],"roles":[48],"certain,":[50],"normal":[51],"pathological":[53],"conditions.":[54],"However,":[55],"several":[56],"tools":[57,77],"such":[62],"complex":[63],"datasets":[64,169],"powerful,":[66,96],"but":[67,82],"hard-to-use":[68],"with":[69,108],"steep":[70],"learning":[71],"curves.":[72],"In":[73],"addition,":[74],"some":[75],"other":[76],"easy":[79],"use,":[81],"weak":[84],"terms":[86],"analytical":[88],"power.":[89],"Previously,":[90],"we":[91,133,146],"introduced":[93],"ProteoSign,":[94],"yet":[97],"user-friendly":[98],"open-source":[99],"online":[100],"platform":[101],"protein":[103],"expression/abundance":[105],"designed":[107],"end-proteomics":[110],"user":[111,153],"mind.":[113],"Part":[114],"Proteosign's":[116],"power":[117],"stems":[118],"from":[119],"utilization":[121],"well-established":[124],"Linear":[125],"Models":[126],"For":[127],"Microarray":[128],"Data":[129],"(LIMMA)":[130],"methodology.":[131],"Here,":[132],"present":[134],"substantial":[136],"upgrade":[137],"this":[139],"computational":[140],"resource,":[141],"called":[142],"ProteoSign":[143,199],"v2,":[144],"where":[145],"introduce":[147,183],"major":[148],"improvements,":[149],"also":[150,182],"based":[151],"feedback.":[154],"The":[155],"new":[156],"version":[157],"offers":[158],"more":[159],"plot":[160],"options,":[161],"supports":[162],"additional":[163],"experimental":[164],"designs,":[165],"analyzes":[166],"updated":[167],"input":[168],"performs":[171],"gene":[173],"enrichment":[174],"differentially":[178],"expressed":[179],"proteins.":[180],"We":[181],"deployment":[185],"Docker":[188],"technology":[189],"significantly":[191],"increase":[192],"speed":[194],"full":[197],"analysis.":[198],"v2":[200],"is":[201],"available":[202],"at":[203],"http://bioinformatics.med.uoc.gr/ProteoSign.":[204]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
