{"id":"https://openalex.org/W3159928091","doi":"https://doi.org/10.1093/nar/gkab319","title":"PE-Designer and PE-Analyzer: web-based design and analysis tools for CRISPR prime editing","display_name":"PE-Designer and PE-Analyzer: web-based design and analysis tools for CRISPR prime editing","publication_year":2021,"publication_date":"2021-04-22","ids":{"openalex":"https://openalex.org/W3159928091","doi":"https://doi.org/10.1093/nar/gkab319","mag":"3159928091","pmid":"https://pubmed.ncbi.nlm.nih.gov/33939828"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab319","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab319","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W499/38842158/gkab319.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/W1/W499/38842158/gkab319.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037463025","display_name":"Gue\u2010Ho Hwang","orcid":"https://orcid.org/0000-0002-4201-0974"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Gue-Ho Hwang","raw_affiliation_strings":["Department of Chemistry and Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077099423","display_name":"You Kyeong Jeong","orcid":"https://orcid.org/0000-0002-8788-3605"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"You Kyeong Jeong","raw_affiliation_strings":["Department of Chemistry and Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000212906","display_name":"Omer Habib","orcid":null},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Omer Habib","raw_affiliation_strings":["Department of Chemistry and Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060957844","display_name":"Sung-Ah Hong","orcid":"https://orcid.org/0000-0002-3280-5677"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sung-Ah Hong","raw_affiliation_strings":["Department of Chemistry and Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060146997","display_name":"Kayeong Lim","orcid":"https://orcid.org/0000-0002-6274-7252"},"institutions":[{"id":"https://openalex.org/I4210104335","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210104335"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kayeong Lim","raw_affiliation_strings":["Center for Genome Engineering, Institute for Basic Science, Daejeon, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genome Engineering, Institute for Basic Science, Daejeon, South Korea","institution_ids":["https://openalex.org/I4210104335"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100390285","display_name":"Jin\u2010Soo Kim","orcid":"https://orcid.org/0000-0003-4847-1306"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I4210104335","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210104335"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jin-Soo Kim","raw_affiliation_strings":["Center for Genome Engineering, Institute for Basic Science, Daejeon, South Korea","Department of Chemistry, Seoul National University, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genome Engineering, Institute for Basic Science, Daejeon, South Korea","institution_ids":["https://openalex.org/I4210104335"]},{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul, South Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058387827","display_name":"Sangsu Bae","orcid":"https://orcid.org/0000-0003-3615-8566"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Sangsu Bae","raw_affiliation_strings":["Department of Chemistry and Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea"],"raw_orcid":"https://orcid.org/0000-0003-3615-8566","affiliations":[{"raw_affiliation_string":"Department of Chemistry and Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul, South Korea","institution_ids":["https://openalex.org/I4575257"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5058387827"],"corresponding_institution_ids":["https://openalex.org/I4575257"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":7.5336,"has_fulltext":false,"cited_by_count":123,"citation_normalized_percentile":{"value":0.98373384,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"49","issue":"W1","first_page":"W499","last_page":"W504"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spectrum-analyzer","display_name":"Spectrum analyzer","score":0.6344809532165527},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6118592619895935},{"id":"https://openalex.org/keywords/login","display_name":"Login","score":0.5272079110145569},{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.44956374168395996},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.43860673904418945},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.4169454872608185},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3531944155693054},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3264840543270111},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2727787494659424},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.19442740082740784},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14571917057037354}],"concepts":[{"id":"https://openalex.org/C158007255","wikidata":"https://www.wikidata.org/wiki/Q1055222","display_name":"Spectrum analyzer","level":2,"score":0.6344809532165527},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6118592619895935},{"id":"https://openalex.org/C113324615","wikidata":"https://www.wikidata.org/wiki/Q472302","display_name":"Login","level":2,"score":0.5272079110145569},{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.44956374168395996},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.43860673904418945},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.4169454872608185},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3531944155693054},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3264840543270111},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2727787494659424},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.19442740082740784},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14571917057037354},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000072669","descriptor_name":"Gene Editing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkab319","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab319","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W499/38842158/gkab319.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33939828","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33939828","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8265102","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8265102","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:s-space.snu.ac.kr:10371/179113","is_oa":false,"landing_page_url":"https://hdl.handle.net/10371/179113","pdf_url":null,"source":{"id":"https://openalex.org/S4306401345","display_name":"Seoul National University Open Repository (Seoul National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139264467","host_organization_name":"Seoul National University","host_organization_lineage":["https://openalex.org/I139264467"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab319","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab319","pdf_url":"https://academic.oup.com/nar/article-pdf/49/W1/W499/38842158/gkab319.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5199999809265137,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G3021770691","display_name":null,"funder_award_id":"P0015362","funder_id":"https://openalex.org/F4320322064","funder_display_name":"Korea Institute for Advancement of Technology"},{"id":"https://openalex.org/G6382125658","display_name":null,"funder_award_id":"2021M3A9H3015389","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G6945655816","display_name":null,"funder_award_id":"IBS-R021-D1","funder_id":"https://openalex.org/F4320326441","funder_display_name":"Institute for Basic Science"}],"funders":[{"id":"https://openalex.org/F4320322064","display_name":"Korea Institute for Advancement of Technology","ror":"https://ror.org/015w1qa96"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320326441","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W1608084731","https://openalex.org/W1977709885","https://openalex.org/W2025412492","https://openalex.org/W2039705224","https://openalex.org/W2045435533","https://openalex.org/W2050480410","https://openalex.org/W2058792860","https://openalex.org/W2096261947","https://openalex.org/W2107959600","https://openalex.org/W2114245320","https://openalex.org/W2115603949","https://openalex.org/W2122563582","https://openalex.org/W2224094873","https://openalex.org/W2290032338","https://openalex.org/W2336828812","https://openalex.org/W2470801200","https://openalex.org/W2480829753","https://openalex.org/W2509775353","https://openalex.org/W2619804561","https://openalex.org/W2737309984","https://openalex.org/W2766599608","https://openalex.org/W2793309516","https://openalex.org/W2883250809","https://openalex.org/W2889513238","https://openalex.org/W2915459742","https://openalex.org/W2916364858","https://openalex.org/W2939749480","https://openalex.org/W2973637541","https://openalex.org/W2981137429","https://openalex.org/W3012016445","https://openalex.org/W3020732568","https://openalex.org/W3023181423","https://openalex.org/W3038121973","https://openalex.org/W3045144021","https://openalex.org/W3087701445","https://openalex.org/W3089756407","https://openalex.org/W3131093799","https://openalex.org/W3157416777","https://openalex.org/W4242653962","https://openalex.org/W4245053291","https://openalex.org/W6794060545"],"related_works":["https://openalex.org/W4293199045","https://openalex.org/W2405656580","https://openalex.org/W3162049976","https://openalex.org/W2642604616","https://openalex.org/W4401091785","https://openalex.org/W4381712632","https://openalex.org/W4235220108","https://openalex.org/W4365936098","https://openalex.org/W3029656231","https://openalex.org/W2392118929"],"abstract_inverted_index":{"Prime":[0],"editing":[1,19],"technology":[2],"is":[3,37],"capable":[4],"of":[5,16,57,73],"generating":[6],"targeted":[7],"insertions,":[8],"deletions,":[9],"and":[10,29,96,113,122,148,181,186,193],"base":[11,52],"conversions.":[12],"However,":[13],"the":[14,34,43,55,70,124,176],"process":[15],"designing":[17],"prime":[18,62],"guide":[20,45,115],"RNAs":[21,46],"(pegRNAs),":[22],"which":[23],"contain":[24],"a":[25,30,99,131,146,196],"primer":[26],"binding":[27],"site":[28],"reverse-transcription":[31],"template":[32],"at":[33,191],"3'":[35],"end,":[36],"more":[38],"complex":[39],"than":[40],"that":[41,159,168],"for":[42,83,92,102,134],"single":[44],"used":[47],"with":[48,119],"CRISPR":[49],"nucleases":[50],"or":[51],"editors.":[53],"Furthermore,":[54],"assessment":[56,77],"high-throughput":[58,139],"sequencing":[59,140,170],"data":[60,164,171],"after":[61],"editors":[63],"(PEs)":[64],"have":[65],"been":[66],"employed":[67],"should":[68],"consider":[69],"unique":[71],"feature":[72],"PEs;":[74],"thus,":[75],"pre-existing":[76],"tools":[78,91],"cannot":[79],"directly":[80],"be":[81,173],"adopted":[82],"PEs.":[84],"Here,":[85],"we":[86],"present":[87],"two":[88],"user-friendly":[89],"web-based":[90],"PEs,":[93],"named":[94],"PE-Designer":[95,185],"PE-Analyzer.":[97],"PE-Designer,":[98],"dedicated":[100,132],"tool":[101,133],"pegRNA":[103,110],"selection,":[104],"provides":[105,149],"all":[106],"possible":[107],"target":[108],"sequences,":[109,112],"extension":[111],"nicking":[114],"RNA":[116],"sequences":[117],"together":[118],"useful":[120],"information,":[121],"displays":[123],"results":[125],"in":[126,145],"an":[127],"interactive":[128,150],"image.":[129],"PE-Analyzer,":[130],"PE":[135],"outcome":[136],"analysis,":[137],"accepts":[138],"data,":[141],"summarizes":[142],"mutation-related":[143],"information":[144],"table,":[147],"graphs.":[151],"PE-Analyzer":[152,187],"was":[153],"mainly":[154],"written":[155],"using":[156],"JavaScript":[157],"so":[158],"it":[160],"can":[161],"analyze":[162],"several":[163],"sets":[165],"without":[166,195],"requiring":[167],"huge":[169],"(>100MB)":[172],"uploaded":[174],"to":[175],"server,":[177],"reducing":[178],"analysis":[179],"time":[180],"increasing":[182],"personal":[183],"security.":[184],"are":[188],"freely":[189],"available":[190],"http://www.rgenome.net/pe-designer/":[192],"http://www.rgenome.net/pe-analyzer/":[194],"login":[197],"process.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":23},{"year":2024,"cited_by_count":31},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":22},{"year":2021,"cited_by_count":17}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
