{"id":"https://openalex.org/W3152493484","doi":"https://doi.org/10.1093/nar/gkab268","title":"miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale","display_name":"miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale","publication_year":2021,"publication_date":"2021-04-16","ids":{"openalex":"https://openalex.org/W3152493484","doi":"https://doi.org/10.1093/nar/gkab268","mag":"3152493484","pmid":"https://pubmed.ncbi.nlm.nih.gov/33872372"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab268","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab268","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkab268","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075631508","display_name":"Tobias Fehlmann","orcid":"https://orcid.org/0000-0003-1967-2918"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias Fehlmann","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany"],"affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084504324","display_name":"Fabian Kern","orcid":"https://orcid.org/0000-0002-8223-3750"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabian Kern","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany"],"affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016434627","display_name":"Omar Laham","orcid":null},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Omar Laham","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany"],"affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015677497","display_name":"Christina Backes","orcid":"https://orcid.org/0000-0001-9330-9290"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christina Backes","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany"],"affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058152494","display_name":"Jeffrey Solomon","orcid":"https://orcid.org/0000-0002-8948-0682"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jeffrey Solomon","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany"],"affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088111641","display_name":"Pascal Hirsch","orcid":"https://orcid.org/0000-0003-4152-9931"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pascal Hirsch","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany"],"affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029094445","display_name":"Carsten Volz","orcid":"https://orcid.org/0000-0001-7094-5294"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]},{"id":"https://openalex.org/I4210142777","display_name":"Helmholtz Institute for Pharmaceutical Research Saarland","ror":"https://ror.org/042dsac10","country_code":"DE","type":"government","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929","https://openalex.org/I4210142777"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Carsten Volz","raw_affiliation_strings":["Department of Microbial Natural Products, Helmholtz-Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI) and Department of Pharmacy, Saarland University, Campus E8 1, 66123 Saarbr\u00fccken, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Microbial Natural Products, Helmholtz-Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI) and Department of Pharmacy, Saarland University, Campus E8 1, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210142777","https://openalex.org/I4210124929","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077818118","display_name":"Rolf M\u00fcller","orcid":"https://orcid.org/0000-0002-1042-5665"},"institutions":[{"id":"https://openalex.org/I4210142777","display_name":"Helmholtz Institute for Pharmaceutical Research Saarland","ror":"https://ror.org/042dsac10","country_code":"DE","type":"government","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929","https://openalex.org/I4210142777"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rolf M\u00fcller","raw_affiliation_strings":["Department of Microbial Natural Products, Helmholtz-Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI) and Department of Pharmacy, Saarland University, Campus E8 1, 66123 Saarbr\u00fccken, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Microbial Natural Products, Helmholtz-Institute for Pharmaceutical Research Saarland (HIPS), Helmholtz Centre for Infection Research (HZI) and Department of Pharmacy, Saarland University, Campus E8 1, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210142777","https://openalex.org/I4210124929","https://openalex.org/I91712215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020280119","display_name":"Andreas Keller","orcid":"https://orcid.org/0000-0002-5361-0895"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Andreas Keller","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]},{"raw_affiliation_string":"Department of Neurology and Neurological Sciences, Stanford University School of Medicine, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5020280119"],"corresponding_institution_ids":["https://openalex.org/I91712215","https://openalex.org/I97018004"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.796,"has_fulltext":false,"cited_by_count":52,"citation_normalized_percentile":{"value":0.92073259,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"49","issue":"W1","first_page":"W397","last_page":"W408"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mirbase","display_name":"MiRBase","score":0.8313627243041992},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.767500638961792},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.6677080392837524},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5633015036582947},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5555838346481323},{"id":"https://openalex.org/keywords/small-rna","display_name":"Small RNA","score":0.48606017231941223},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.44305911660194397},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.44035080075263977},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.41657644510269165},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3008553087711334},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.27767494320869446},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20435896515846252},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.17497003078460693},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.17407602071762085},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.14948275685310364},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.10366290807723999}],"concepts":[{"id":"https://openalex.org/C49305753","wikidata":"https://www.wikidata.org/wiki/Q6826947","display_name":"MiRBase","level":4,"score":0.8313627243041992},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.767500638961792},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.6677080392837524},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5633015036582947},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5555838346481323},{"id":"https://openalex.org/C2779341050","wikidata":"https://www.wikidata.org/wiki/Q24287527","display_name":"Small RNA","level":4,"score":0.48606017231941223},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.44305911660194397},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.44035080075263977},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.41657644510269165},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3008553087711334},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.27767494320869446},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20435896515846252},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.17497003078460693},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.17407602071762085},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.14948275685310364},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.10366290807723999},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003704","descriptor_name":"Dementia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003704","descriptor_name":"Dementia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003704","descriptor_name":"Dementia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkab268","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab268","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33872372","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33872372","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:publikationen.sulb.uni-saarland.de:20.500.11880/36660","is_oa":true,"landing_page_url":"http://dx.doi.org/10.22028/D291-40790","pdf_url":null,"source":{"id":"https://openalex.org/S4377196499","display_name":"Publications of the UdS (Saarland University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I91712215","host_organization_name":"Saarland University","host_organization_lineage":["https://openalex.org/I91712215"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"doc-type:article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8262700","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8262700","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:repository.helmholtz-hzi.de:10033/622897","is_oa":true,"landing_page_url":"http://hdl.handle.net/10033/622897","pdf_url":null,"source":{"id":"https://openalex.org/S4377196474","display_name":"HZI (Helmholtz Centre for Infection Research)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210124929","host_organization_name":"Helmholtz Centre for Infection Research","host_organization_lineage":["https://openalex.org/I4210124929"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research","raw_type":"Article"},{"id":"doi:10.22028/d291-40790","is_oa":true,"landing_page_url":"https://doi.org/10.22028/d291-40790","pdf_url":null,"source":{"id":"https://openalex.org/S7407052975","display_name":"Universit\u00e4t des Saarlandes","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab268","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab268","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G3453357701","display_name":null,"funder_award_id":"14446","funder_id":"https://openalex.org/F4320306136","funder_display_name":"Michael J. Fox Foundation for Parkinson's Research"}],"funders":[{"id":"https://openalex.org/F4320306136","display_name":"Michael J. Fox Foundation for Parkinson's Research","ror":"https://ror.org/03arq3225"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W1014881830","https://openalex.org/W1972989638","https://openalex.org/W2100465225","https://openalex.org/W2110417468","https://openalex.org/W2115662330","https://openalex.org/W2124985265","https://openalex.org/W2130305733","https://openalex.org/W2169456326","https://openalex.org/W2174181728","https://openalex.org/W2185215643","https://openalex.org/W2216943200","https://openalex.org/W2223836536","https://openalex.org/W2234145498","https://openalex.org/W2279137520","https://openalex.org/W2298550863","https://openalex.org/W2341868400","https://openalex.org/W2343700030","https://openalex.org/W2391969373","https://openalex.org/W2545155109","https://openalex.org/W2566674881","https://openalex.org/W2587667774","https://openalex.org/W2592927924","https://openalex.org/W2599844701","https://openalex.org/W2735747624","https://openalex.org/W2762082538","https://openalex.org/W2789635805","https://openalex.org/W2796635314","https://openalex.org/W2799571658","https://openalex.org/W2810144884","https://openalex.org/W2889417790","https://openalex.org/W2893833768","https://openalex.org/W2898440040","https://openalex.org/W2919470997","https://openalex.org/W2945288061","https://openalex.org/W2947781194","https://openalex.org/W2951626485","https://openalex.org/W2953211530","https://openalex.org/W2970503289","https://openalex.org/W2988695675","https://openalex.org/W2989832464","https://openalex.org/W2993429139","https://openalex.org/W3022324779","https://openalex.org/W3023862871","https://openalex.org/W3088117294","https://openalex.org/W3095979265","https://openalex.org/W3103608882","https://openalex.org/W3111557889","https://openalex.org/W3112369941","https://openalex.org/W3113366819","https://openalex.org/W3120964934","https://openalex.org/W4211064852","https://openalex.org/W4243624632","https://openalex.org/W4255738661","https://openalex.org/W6806115372"],"related_works":["https://openalex.org/W2171257316","https://openalex.org/W2951946877","https://openalex.org/W2007159807","https://openalex.org/W2153768468","https://openalex.org/W2235368041","https://openalex.org/W2001406627","https://openalex.org/W2088415316","https://openalex.org/W2009658305","https://openalex.org/W2144674491","https://openalex.org/W3208144136"],"abstract_inverted_index":{"Analyzing":[0],"all":[1],"features":[2],"of":[3,24,48,67,120],"small":[4,34],"non-coding":[5,78],"RNA":[6,35,79],"sequencing":[7,124],"data":[8,57,107],"can":[9],"be":[10],"demanding":[11],"and":[12,30,50,76,104,140,149],"challenging.":[13],"To":[14,115],"facilitate":[15],"this":[16],"process,":[17],"we":[18,40,126,164],"developed":[19],"miRMaster.":[20],"After":[21],"the":[22,65,117,137,156,170],"analysis":[23,66,92,98,168,173],"over":[25,37],"125":[26],"000":[27],"human":[28,33],"samples":[29],"1.5":[31],"trillion":[32],"reads":[36],"4":[38],"years,":[39],"present":[41],"miRMaster":[42,61,176],"2":[43,62],"with":[44,169],"a":[45,128],"wide":[46],"range":[47],"updates":[49],"new":[51,90,150],"features.":[52],"We":[53,87],"extended":[54],"our":[55],"reference":[56],"sets":[58],"so":[59],"that":[60,153],"now":[63,159],"supports":[64],"eight":[68],"species":[69],"(e.g.":[70,81,161],"human,":[71],"mouse,":[72],"chicken,":[73],"dog,":[74],"cow)":[75],"10":[77],"classes":[80],"microRNAs,":[82],"piRNAs,":[83],"tRNAs,":[84],"rRNAs,":[85],"circRNAs).":[86],"also":[88],"incorporated":[89,127],"downstream":[91],"modules":[93],"such":[94],"as":[95],"batch":[96],"effect":[97],"or":[99],"sample":[100],"embeddings":[101],"using":[102],"UMAP,":[103],"updated":[105],"annotation":[106],"bases":[108],"included":[109],"by":[110],"default":[111],"(miRBase,":[112],"Ensembl,":[113],"GtRNAdb).":[114],"accommodate":[116],"increasing":[118],"popularity":[119],"single":[121],"cell":[122],"small-RNA":[123],"data,":[125],"module":[129],"for":[130],"unique":[131],"molecular":[132],"identifier":[133],"(UMI)":[134],"processing.":[135],"Further,":[136],"output":[138,151],"tables":[139],"graphics":[141],"have":[142],"been":[143],"improved":[144],"based":[145],"on":[146],"user":[147],"feedback":[148],"formats":[152],"emerged":[154],"in":[155],"community":[157],"are":[158],"supported":[160],"miRGFF3).":[162],"Finally,":[163],"integrated":[165],"differential":[166],"expression":[167],"miRNA":[171],"enrichment":[172],"tool":[174],"miEAA.":[175],"is":[177],"freely":[178],"available":[179],"at":[180],"https://www.ccb.uni-saarland.de/mirmaster2.":[181]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}