{"id":"https://openalex.org/W3214475573","doi":"https://doi.org/10.1093/nar/gkab1034","title":"IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis","display_name":"IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis","publication_year":2021,"publication_date":"2021-11-05","ids":{"openalex":"https://openalex.org/W3214475573","doi":"https://doi.org/10.1093/nar/gkab1034","mag":"3214475573","pmid":"https://pubmed.ncbi.nlm.nih.gov/34755877"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab1034","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab1034","pdf_url":"https://academic.oup.com/nar/article-pdf/50/D1/D640/42058365/gkab1034.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/50/D1/D640/42058365/gkab1034.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038607647","display_name":"Max Kotlyar","orcid":"https://orcid.org/0000-0002-1111-8667"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Max Kotlyar","raw_affiliation_strings":["Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network, Toronto, ON\u00a0M5T 0S8, Canada"],"raw_orcid":"https://orcid.org/0000-0002-1111-8667","affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network, Toronto, ON\u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I2800133710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085732287","display_name":"Chiara Pastrello","orcid":"https://orcid.org/0000-0002-1934-7472"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chiara Pastrello","raw_affiliation_strings":["Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network, Toronto, ON\u00a0M5T 0S8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network, Toronto, ON\u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I2800133710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006067108","display_name":"Zuhaib Ahmed","orcid":null},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Zuhaib Ahmed","raw_affiliation_strings":["Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network, Toronto, ON\u00a0M5T 0S8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network, Toronto, ON\u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I2800133710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039055549","display_name":"Justin N. Chee","orcid":"https://orcid.org/0000-0002-1117-8643"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Justin Chee","raw_affiliation_strings":["Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network, Toronto, ON\u00a0M5T 0S8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network, Toronto, ON\u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I2800133710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090510664","display_name":"Zofia Varyova","orcid":null},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Zofia Varyova","raw_affiliation_strings":["Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network, Toronto, ON\u00a0M5T 0S8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network, Toronto, ON\u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I2800133710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055656807","display_name":"Igor Juri\u0161ica","orcid":"https://orcid.org/0000-0002-2507-946X"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I207624831","display_name":"Slovak Academy of Sciences","ror":"https://ror.org/03h7qq074","country_code":"SK","type":"government","lineage":["https://openalex.org/I207624831"]},{"id":"https://openalex.org/I2800133710","display_name":"Discovery Centre","ror":"https://ror.org/02g5x8q86","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2800133710"]},{"id":"https://openalex.org/I4210145572","display_name":"Institute of Neuroimmunology of the Slovak Academy of Sciences","ror":"https://ror.org/05c516317","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210145572"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA","SK"],"is_corresponding":true,"raw_author_name":"Igor Jurisica","raw_affiliation_strings":["Departments of Medical Biophysics and Computer Science, University of Toronto, Toronto, ON\u00a0M5S 1A4, Canada","Institute of Neuroimmunology, Slovak Academy of Sciences, Bratislava, Slovakia","Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network, Toronto, ON\u00a0M5T 0S8, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departments of Medical Biophysics and Computer Science, University of Toronto, Toronto, ON\u00a0M5S 1A4, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Institute of Neuroimmunology, Slovak Academy of Sciences, Bratislava, Slovakia","institution_ids":["https://openalex.org/I4210145572","https://openalex.org/I207624831"]},{"raw_affiliation_string":"Osteoarthritis Research Program, Division of Orthopedic Surgery, Schroeder Arthritis Institute and Data Science Discovery Centre for Chronic Diseases, Krembil Research Institute, University Health Network, Toronto, ON\u00a0M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386","https://openalex.org/I2800133710"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5055656807"],"corresponding_institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I185261750","https://openalex.org/I207624831","https://openalex.org/I2800133710","https://openalex.org/I4210145572","https://openalex.org/I4388446386"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.5989,"has_fulltext":true,"cited_by_count":86,"citation_normalized_percentile":{"value":0.96241324,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"50","issue":"D1","first_page":"D640","last_page":"D647"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9366577863693237},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6686723828315735},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6044497489929199},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5071456432342529},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.43184179067611694}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9366577863693237},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6686723828315735},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6044497489929199},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5071456432342529},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43184179067611694},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkab1034","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab1034","pdf_url":"https://academic.oup.com/nar/article-pdf/50/D1/D640/42058365/gkab1034.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:34755877","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34755877","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8728267","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8728267","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab1034","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab1034","pdf_url":"https://academic.oup.com/nar/article-pdf/50/D1/D640/42058365/gkab1034.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6899999976158142}],"awards":[{"id":"https://openalex.org/G1409757676","display_name":null,"funder_award_id":"34876","funder_id":"https://openalex.org/F4320313340","funder_display_name":"Ontario Research Foundation"},{"id":"https://openalex.org/G4029805389","display_name":null,"funder_award_id":"225404","funder_id":"https://openalex.org/F4320319952","funder_display_name":"Canada Foundation for Innovation"},{"id":"https://openalex.org/G5639122495","display_name":null,"funder_award_id":"203475","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G7029236061","display_name":null,"funder_award_id":"29272","funder_id":"https://openalex.org/F4320319952","funder_display_name":"Canada Foundation for Innovation"},{"id":"https://openalex.org/G8297743590","display_name":null,"funder_award_id":"33536","funder_id":"https://openalex.org/F4320319952","funder_display_name":"Canada Foundation for Innovation"}],"funders":[{"id":"https://openalex.org/F4320311433","display_name":"University Health Network","ror":"https://ror.org/042xt5161"},{"id":"https://openalex.org/F4320313340","display_name":"Ontario Research Foundation","ror":null},{"id":"https://openalex.org/F4320313552","display_name":"Toronto General and Western Hospital Foundation","ror":"https://ror.org/00tfsm290"},{"id":"https://openalex.org/F4320319952","display_name":"Canada Foundation for Innovation","ror":"https://ror.org/000az4664"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3214475573.pdf","grobid_xml":"https://content.openalex.org/works/W3214475573.grobid-xml"},"referenced_works_count":86,"referenced_works":["https://openalex.org/W1611787727","https://openalex.org/W1969709265","https://openalex.org/W1981409633","https://openalex.org/W1989277387","https://openalex.org/W1993754619","https://openalex.org/W1999586982","https://openalex.org/W2018570668","https://openalex.org/W2036568936","https://openalex.org/W2039473152","https://openalex.org/W2043764521","https://openalex.org/W2052685738","https://openalex.org/W2067305633","https://openalex.org/W2071390331","https://openalex.org/W2081375228","https://openalex.org/W2095867585","https://openalex.org/W2096766502","https://openalex.org/W2098979213","https://openalex.org/W2101735923","https://openalex.org/W2103017472","https://openalex.org/W2110684048","https://openalex.org/W2113654464","https://openalex.org/W2118258530","https://openalex.org/W2118953105","https://openalex.org/W2122863289","https://openalex.org/W2125118217","https://openalex.org/W2126717546","https://openalex.org/W2130085891","https://openalex.org/W2130687290","https://openalex.org/W2134394193","https://openalex.org/W2140883620","https://openalex.org/W2142635339","https://openalex.org/W2143892509","https://openalex.org/W2148043260","https://openalex.org/W2152871646","https://openalex.org/W2153577994","https://openalex.org/W2158197251","https://openalex.org/W2167566248","https://openalex.org/W2168708357","https://openalex.org/W2171199014","https://openalex.org/W2171599819","https://openalex.org/W2234559012","https://openalex.org/W2410743230","https://openalex.org/W2412077986","https://openalex.org/W2474149346","https://openalex.org/W2481258410","https://openalex.org/W2529400971","https://openalex.org/W2534390616","https://openalex.org/W2557976825","https://openalex.org/W2582743722","https://openalex.org/W2616561032","https://openalex.org/W2624021832","https://openalex.org/W2767891136","https://openalex.org/W2768151985","https://openalex.org/W2770001657","https://openalex.org/W2805310212","https://openalex.org/W2807570578","https://openalex.org/W2899197140","https://openalex.org/W2899942534","https://openalex.org/W2901496107","https://openalex.org/W2909128886","https://openalex.org/W2913996609","https://openalex.org/W2948320314","https://openalex.org/W2949814610","https://openalex.org/W2951422523","https://openalex.org/W2964790432","https://openalex.org/W2983166786","https://openalex.org/W3002547690","https://openalex.org/W3012267228","https://openalex.org/W3015964336","https://openalex.org/W3017356540","https://openalex.org/W3024034671","https://openalex.org/W3043379468","https://openalex.org/W3093053585","https://openalex.org/W3094046234","https://openalex.org/W3102648521","https://openalex.org/W3107527779","https://openalex.org/W3108286559","https://openalex.org/W3112376646","https://openalex.org/W3112600195","https://openalex.org/W3165506417","https://openalex.org/W3211402536","https://openalex.org/W4205247356","https://openalex.org/W4231254854","https://openalex.org/W4243979784","https://openalex.org/W6636578787","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"Improved":[0],"bioassays":[1],"have":[2],"significantly":[3],"increased":[4],"the":[5,14,96],"rate":[6],"of":[7,16,25,37,43,54,103],"identifying":[8],"new":[9,30],"protein-protein":[10],"interactions":[11,125],"(PPIs),":[12],"and":[13,61,67,86,99,128,153,164],"number":[15],"detected":[17],"human":[18,26],"PPIs":[19,31,45,107,135,178],"has":[20],"greatly":[21],"exceeded":[22],"early":[23],"estimates":[24],"interactome":[27],"size.":[28],"These":[29],"provide":[32],"a":[33,49,101],"more":[34],"complete":[35],"view":[36,186],"disease":[38],"mechanisms":[39],"but":[40],"precise":[41],"understanding":[42],"how":[44],"affect":[46],"phenotype":[47],"remains":[48],"challenge.":[50],"It":[51],"requires":[52],"knowledge":[53],"PPI":[55,76],"context":[56,105,122,170],"(e.g.":[57,124],"tissues,":[58],"subcellular":[59],"localizations),":[60],"functional":[62],"roles,":[63],"especially":[64],"within":[65],"pathways":[66],"protein":[68],"complexes.":[69],"The":[70,89],"previous":[71],"IID":[72,189],"release":[73],"focused":[74],"on":[75],"context,":[77],"providing":[78],"networks":[79],"with":[80,120,136,175],"comprehensive":[81],"tissue,":[82],"disease,":[83],"cellular":[84],"localization,":[85],"druggability":[87],"annotations.":[88],"current":[90],"update":[91,132,195],"adds":[92],"developmental":[93],"stages":[94],"to":[95,106,115,177,184],"available":[97,121,160,197],"contexts,":[98],"provides":[100,190],"way":[102],"assigning":[104],"that":[108],"could":[109],"not":[110],"be":[111,173],"previously":[112],"annotated":[113],"due":[114],"insufficient":[116],"data":[117],"or":[118,151,179,187],"incompatibility":[119],"categories":[123],"between":[126],"membrane":[127],"cytoplasmic":[129],"proteins).":[130],"This":[131,194],"also":[133],"annotates":[134],"conservation":[137],"across":[138],"species,":[139],"directionality":[140],"in":[141,144],"pathways,":[142],"membership":[143],"large":[145],"complexes,":[146],"interaction":[147],"stability":[148],"(i.e.":[149],"stable":[150],"transient),":[152],"mutation":[154],"effects.":[155],"Enrichment":[156],"analysis":[157],"is":[158,196],"now":[159],"for":[161,168],"all":[162],"annotations,":[163],"includes":[165],"multiple":[166],"options;":[167],"example,":[169],"annotations":[171],"can":[172],"analyzed":[174],"respect":[176],"network":[180,192],"proteins.":[181],"In":[182],"addition":[183],"tabular":[185],"download,":[188],"online":[191],"visualization.":[193],"at":[198],"http://ophid.utoronto.ca/iid.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-11T18:08:03.149640","created_date":"2025-10-10T00:00:00"}
