{"id":"https://openalex.org/W3212393225","doi":"https://doi.org/10.1093/nar/gkab1026","title":"ProteomicsDB: toward a FAIR open-source resource for life-science research","display_name":"ProteomicsDB: toward a FAIR open-source resource for life-science research","publication_year":2021,"publication_date":"2021-10-16","ids":{"openalex":"https://openalex.org/W3212393225","doi":"https://doi.org/10.1093/nar/gkab1026","mag":"3212393225","pmid":"https://pubmed.ncbi.nlm.nih.gov/34791421"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkab1026","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab1026","pdf_url":"https://academic.oup.com/nar/article-pdf/50/D1/D1541/42058228/gkab1026.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/50/D1/D1541/42058228/gkab1026.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002845809","display_name":"Ludwig Lautenbacher","orcid":"https://orcid.org/0000-0002-1540-5911"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ludwig Lautenbacher","raw_affiliation_strings":["Technical University of Munich, Computational Mass Spectrometry, 85354\u00a0Freising, Bavaria, Germany"],"raw_orcid":"https://orcid.org/0000-0002-1540-5911","affiliations":[{"raw_affiliation_string":"Technical University of Munich, Computational Mass Spectrometry, 85354\u00a0Freising, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022128097","display_name":"Patroklos Samaras","orcid":"https://orcid.org/0000-0001-6042-1585"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Patroklos Samaras","raw_affiliation_strings":["Technical University of Munich, Chair of Proteomics and Bioanalytics, 85354\u00a0Freising, Bavaria, Germany"],"raw_orcid":"https://orcid.org/0000-0001-6042-1585","affiliations":[{"raw_affiliation_string":"Technical University of Munich, Chair of Proteomics and Bioanalytics, 85354\u00a0Freising, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017474568","display_name":"Julian M\u00fcller","orcid":"https://orcid.org/0000-0003-4108-7926"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Julian Muller","raw_affiliation_strings":["Technical University of Munich, Chair of Proteomics and Bioanalytics, 85354\u00a0Freising, Bavaria, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Chair of Proteomics and Bioanalytics, 85354\u00a0Freising, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065371205","display_name":"Andreas Grafberger","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Grafberger","raw_affiliation_strings":["Technical University of Munich, Chair of Proteomics and Bioanalytics, 85354\u00a0Freising, Bavaria, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Chair of Proteomics and Bioanalytics, 85354\u00a0Freising, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082372626","display_name":"Marwin Shraideh","orcid":"https://orcid.org/0000-0002-3352-3305"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marwin Shraideh","raw_affiliation_strings":["Technical University of Munich, Chair for Information Systems,\u00a085748 Garching, Bavaria, Germany","Technical University of Munich, SAP University Competence Center, 85748\u00a0Garching, Bavaria, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Chair for Information Systems,\u00a085748 Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, SAP University Competence Center, 85748\u00a0Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048708450","display_name":"Johannes Rank","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johannes Rank","raw_affiliation_strings":["Technical University of Munich, Chair for Information Systems,\u00a085748 Garching, Bavaria, Germany","Technical University of Munich, SAP University Competence Center, 85748\u00a0Garching, Bavaria, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Chair for Information Systems,\u00a085748 Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, SAP University Competence Center, 85748\u00a0Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086077369","display_name":"Simon Fuchs","orcid":"https://orcid.org/0000-0002-7372-4232"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Simon T Fuchs","raw_affiliation_strings":["Technical University of Munich, Chair for Information Systems,\u00a085748 Garching, Bavaria, Germany","Technical University of Munich, SAP University Competence Center, 85748\u00a0Garching, Bavaria, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Chair for Information Systems,\u00a085748 Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, SAP University Competence Center, 85748\u00a0Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090219745","display_name":"Tobias Schmidt","orcid":"https://orcid.org/0000-0002-1883-6514"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias K Schmidt","raw_affiliation_strings":["Technical University of Munich, Chair of Proteomics and Bioanalytics, 85354\u00a0Freising, Bavaria, Germany"],"raw_orcid":"https://orcid.org/0000-0002-1883-6514","affiliations":[{"raw_affiliation_string":"Technical University of Munich, Chair of Proteomics and Bioanalytics, 85354\u00a0Freising, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022425218","display_name":"Matthew The","orcid":"https://orcid.org/0000-0002-5401-5553"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthew The","raw_affiliation_strings":["Technical University of Munich, Chair of Proteomics and Bioanalytics, 85354\u00a0Freising, Bavaria, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Chair of Proteomics and Bioanalytics, 85354\u00a0Freising, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088531553","display_name":"Christian Dallago","orcid":"https://orcid.org/0000-0003-4650-6181"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christian Dallago","raw_affiliation_strings":["Technical University of Munich, Center of Doctoral Studies in Informatics and its Applications (CeDoSIA), 85748\u00a0Garching, Bavaria, Germany","Technical University of Munich, Department for Bioinformatics and Computational Biology, 85748\u00a0Garching, Bavaria, Germany"],"raw_orcid":"https://orcid.org/0000-0003-4650-6181","affiliations":[{"raw_affiliation_string":"Technical University of Munich, Center of Doctoral Studies in Informatics and its Applications (CeDoSIA), 85748\u00a0Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, Department for Bioinformatics and Computational Biology, 85748\u00a0Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003369792","display_name":"Holger Wittges","orcid":"https://orcid.org/0000-0002-3593-5290"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Holger Wittges","raw_affiliation_strings":["Technical University of Munich, Chair for Information Systems,\u00a085748 Garching, Bavaria, Germany","Technical University of Munich, SAP University Competence Center, 85748\u00a0Garching, Bavaria, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Chair for Information Systems,\u00a085748 Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, SAP University Competence Center, 85748\u00a0Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064905883","display_name":"Burkhard Rost","orcid":"https://orcid.org/0000-0003-0179-8424"},"institutions":[{"id":"https://openalex.org/I4210137766","display_name":"Institute for Advanced Study","ror":"https://ror.org/03xg85719","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210137766"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Burkhard Rost","raw_affiliation_strings":["Technical University of Munich, Department for Bioinformatics and Computational Biology, 85748\u00a0Garching, Bavaria, Germany","Technical University of Munich, Institute for Advanced Study (TUM-IAS), 85748 Freising,\u00a0Bavaria, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Department for Bioinformatics and Computational Biology, 85748\u00a0Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, Institute for Advanced Study (TUM-IAS), 85748 Freising,\u00a0Bavaria, Germany","institution_ids":["https://openalex.org/I62916508","https://openalex.org/I4210137766"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077586272","display_name":"Helmut Krcmar","orcid":"https://orcid.org/0000-0002-2754-8493"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Helmut Krcmar","raw_affiliation_strings":["Technical University of Munich, Chair for Information Systems,\u00a085748 Garching, Bavaria, Germany","Technical University of Munich, SAP University Competence Center, 85748\u00a0Garching, Bavaria, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Chair for Information Systems,\u00a085748 Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, SAP University Competence Center, 85748\u00a0Garching, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058082024","display_name":"Bernhard K\u00fcster","orcid":"https://orcid.org/0000-0002-9094-1677"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bernhard Kuster","raw_affiliation_strings":["Technical University of Munich, Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), 85354 Freising, Bavaria, Germany","Technical University of Munich, Chair of Proteomics and Bioanalytics, 85354\u00a0Freising, Bavaria, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Munich, Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), 85354 Freising, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Technical University of Munich, Chair of Proteomics and Bioanalytics, 85354\u00a0Freising, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031508585","display_name":"Mathias Wilhelm","orcid":"https://orcid.org/0000-0002-9224-3258"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Mathias Wilhelm","raw_affiliation_strings":["Technical University of Munich, Computational Mass Spectrometry, 85354\u00a0Freising, Bavaria, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9224-3258","affiliations":[{"raw_affiliation_string":"Technical University of Munich, Computational Mass Spectrometry, 85354\u00a0Freising, Bavaria, Germany","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5031508585"],"corresponding_institution_ids":["https://openalex.org/I62916508"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.7893,"has_fulltext":false,"cited_by_count":83,"citation_normalized_percentile":{"value":0.97679015,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"50","issue":"D1","first_page":"D1541","last_page":"D1552"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7656674385070801},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.7152540683746338},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6359343528747559},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6336371898651123},{"id":"https://openalex.org/keywords/reusability","display_name":"Reusability","score":0.6119181513786316},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.560875654220581},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5307471752166748},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4923897981643677},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.47821518778800964},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4754050672054291},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4536038637161255},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.4523058235645294},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.44475504755973816},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.38558727502822876},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.37292975187301636},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12357470393180847}],"concepts":[{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7656674385070801},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.7152540683746338},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6359343528747559},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6336371898651123},{"id":"https://openalex.org/C137981799","wikidata":"https://www.wikidata.org/wiki/Q1369184","display_name":"Reusability","level":3,"score":0.6119181513786316},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.560875654220581},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5307471752166748},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4923897981643677},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.47821518778800964},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4754050672054291},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4536038637161255},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.4523058235645294},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.44475504755973816},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.38558727502822876},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.37292975187301636},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12357470393180847},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkab1026","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab1026","pdf_url":"https://academic.oup.com/nar/article-pdf/50/D1/D1541/42058228/gkab1026.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:34791421","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34791421","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:mediatum.ub.tum.de:node/1634501","is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1634501","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1637489","is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1637489","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1652371","is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1652371","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8728203","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8728203","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkab1026","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkab1026","pdf_url":"https://academic.oup.com/nar/article-pdf/50/D1/D1541/42058228/gkab1026.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G4626242555","display_name":null,"funder_award_id":"SFB1321","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G5601356220","display_name":null,"funder_award_id":"SFB924","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8104252070","display_name":null,"funder_award_id":"031L0168","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8797125558","display_name":null,"funder_award_id":"SFB1309","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3212393225.pdf","grobid_xml":"https://content.openalex.org/works/W3212393225.grobid-xml"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W1548472460","https://openalex.org/W1612369929","https://openalex.org/W1683278196","https://openalex.org/W1840916850","https://openalex.org/W1955394435","https://openalex.org/W1978380670","https://openalex.org/W1985266905","https://openalex.org/W1994825452","https://openalex.org/W1996310767","https://openalex.org/W2004852902","https://openalex.org/W2047163519","https://openalex.org/W2050941970","https://openalex.org/W2069860553","https://openalex.org/W2078771695","https://openalex.org/W2079067121","https://openalex.org/W2079563665","https://openalex.org/W2108508103","https://openalex.org/W2118001361","https://openalex.org/W2123347941","https://openalex.org/W2132656693","https://openalex.org/W2159276924","https://openalex.org/W2164319847","https://openalex.org/W2194882682","https://openalex.org/W2211064704","https://openalex.org/W2219197181","https://openalex.org/W2223389754","https://openalex.org/W2253835652","https://openalex.org/W2260700459","https://openalex.org/W2269175947","https://openalex.org/W2278466560","https://openalex.org/W2302501749","https://openalex.org/W2319828491","https://openalex.org/W2324422863","https://openalex.org/W2332102003","https://openalex.org/W2341844252","https://openalex.org/W2346132737","https://openalex.org/W2396727930","https://openalex.org/W2407926091","https://openalex.org/W2460123445","https://openalex.org/W2473278966","https://openalex.org/W2474747771","https://openalex.org/W2498027120","https://openalex.org/W2531837871","https://openalex.org/W2557833574","https://openalex.org/W2571859373","https://openalex.org/W2580819151","https://openalex.org/W2746205032","https://openalex.org/W2748588053","https://openalex.org/W2769591387","https://openalex.org/W2773787581","https://openalex.org/W2899760200","https://openalex.org/W2947763854","https://openalex.org/W2950403988","https://openalex.org/W2950512597","https://openalex.org/W2982659388","https://openalex.org/W2986041539","https://openalex.org/W2986579771","https://openalex.org/W3012068569","https://openalex.org/W3093868212","https://openalex.org/W3104537585","https://openalex.org/W3112376646","https://openalex.org/W3148324671","https://openalex.org/W3162036156","https://openalex.org/W3163595068","https://openalex.org/W3167897985","https://openalex.org/W3183780749","https://openalex.org/W3207144769","https://openalex.org/W4225139566","https://openalex.org/W4256316091","https://openalex.org/W6721520105","https://openalex.org/W6743243593","https://openalex.org/W6769106747","https://openalex.org/W6770119468"],"related_works":["https://openalex.org/W4282938614","https://openalex.org/W2906929912","https://openalex.org/W2350686889","https://openalex.org/W1965839502","https://openalex.org/W2099755394","https://openalex.org/W2621742671","https://openalex.org/W2114764029","https://openalex.org/W4245251736","https://openalex.org/W2129965124","https://openalex.org/W2517519724"],"abstract_inverted_index":{"ProteomicsDB":[0,116],"(https://www.ProteomicsDB.org)":[1],"is":[2,134],"a":[3,55,74,168],"multi-omics":[4],"and":[5,22,39,80,102,127],"multi-organism":[6],"resource":[7],"for":[8],"life":[9],"science":[10],"research.":[11],"In":[12,152],"this":[13,51],"update,":[14],"we":[15,53,72,114,154],"present":[16],"our":[17,118],"efforts":[18],"to":[19,65,143],"continuously":[20],"develop":[21],"expand":[23],"ProteomicsDB.":[24,70,151],"The":[25,132],"major":[26],"focus":[27],"over":[28],"the":[29,35,43,82,84,92,124,156],"last":[30],"two":[31,95],"years":[32],"was":[33],"improving":[34],"findability,":[36],"accessibility,":[37],"interoperability":[38],"reusability":[40],"(FAIR)":[41],"of":[42,98,130],"data":[44,68,157],"as":[45,47,105,165,167],"well":[46,106,166],"its":[48],"implementation.":[49],"For":[50],"purpose,":[52],"release":[54,73],"new":[56,75,93,96],"application":[57],"programming":[58],"interface":[59,78],"(API)":[60],"that":[61,121,139],"provides":[62],"systematic":[63],"access":[64],"essentially":[66],"all":[67],"in":[69,150],"Second,":[71],"open-source":[76],"user":[77],"(UI)":[79],"show":[81],"advantages":[83],"scientific":[85],"community":[86],"gains":[87],"from":[88],"such":[89],"software.":[90],"With":[91],"interface,":[94],"visualizations":[97],"protein":[99],"primary,":[100],"secondary":[101],"tertiary":[103],"structure":[104],"an":[107,135],"updated":[108],"spectrum":[109],"viewer":[110],"were":[111],"added.":[112],"Furthermore,":[113],"integrated":[115],"with":[117,159],"deep-neural-network":[119],"Prosit":[120],"can":[122,140],"predict":[123],"fragmentation":[125],"characteristics":[126],"retention":[128],"time":[129],"peptides.":[131],"result":[133],"automatic":[136],"processing":[137],"pipeline":[138],"be":[141],"used":[142],"reevaluate":[144],"database":[145],"search":[146],"engine":[147],"results":[148],"stored":[149],"addition,":[153],"extended":[155],"content":[158],"experiments":[160],"investigating":[161],"different":[162],"human":[163],"biology":[164],"newly":[169],"supported":[170],"organism.":[171]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":27},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":24},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":1}],"updated_date":"2026-05-15T08:27:34.491423","created_date":"2025-10-10T00:00:00"}
