{"id":"https://openalex.org/W3097008984","doi":"https://doi.org/10.1093/nar/gkaa946","title":"IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses","display_name":"IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses","publication_year":2020,"publication_date":"2020-10-09","ids":{"openalex":"https://openalex.org/W3097008984","doi":"https://doi.org/10.1093/nar/gkaa946","mag":"3097008984","pmid":"https://pubmed.ncbi.nlm.nih.gov/33137183"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa946","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa946","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D764/35364297/gkaa946.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/D1/D764/35364297/gkaa946.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013600763","display_name":"Simon Roux","orcid":"https://orcid.org/0000-0002-5831-5895"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Simon Roux","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081848590","display_name":"David P\u00e1ez-Espino","orcid":"https://orcid.org/0000-0002-2939-5398"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David P\u00e1ez-Espino","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050011808","display_name":"I-Min A. Chen","orcid":"https://orcid.org/0000-0003-2026-9798"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"I-Min A Chen","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038974860","display_name":"Krishna Palaniappan","orcid":"https://orcid.org/0000-0003-4484-7505"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Krishna Palaniappan","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075093246","display_name":"Anna Ratner","orcid":"https://orcid.org/0000-0001-8877-2002"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna Ratner","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040496456","display_name":"Ken Chu","orcid":"https://orcid.org/0000-0002-9602-1433"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ken Chu","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050966078","display_name":"T. B. K. Reddy","orcid":"https://orcid.org/0000-0002-0871-5567"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T B K Reddy","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056935885","display_name":"Stephen Nayfach","orcid":"https://orcid.org/0000-0003-4625-4164"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Nayfach","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064963970","display_name":"Frederik Schulz","orcid":"https://orcid.org/0000-0002-4932-4677"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Frederik Schulz","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003209851","display_name":"Lee Call","orcid":"https://orcid.org/0000-0002-2857-1337"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lee Call","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064104059","display_name":"Russell Y. Neches","orcid":"https://orcid.org/0000-0002-2055-8381"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell Y Neches","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006298901","display_name":"Tanja Woyke","orcid":"https://orcid.org/0000-0002-9485-5637"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tanja Woyke","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085966412","display_name":"Natalia Ivanova","orcid":"https://orcid.org/0000-0002-5802-9485"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalia N Ivanova","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058414477","display_name":"Emiley A. Eloe\u2010Fadrosh","orcid":"https://orcid.org/0000-0002-8162-1276"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emiley A Eloe-Fadrosh","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023696415","display_name":"Nikos C. Kyrpides","orcid":"https://orcid.org/0000-0002-6131-0462"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nikos C Kyrpides","raw_affiliation_strings":["DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5013600763","https://openalex.org/A5023696415"],"corresponding_institution_ids":["https://openalex.org/I148283060","https://openalex.org/I196679689"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":42.4051,"has_fulltext":false,"cited_by_count":360,"citation_normalized_percentile":{"value":0.99935702,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"49","issue":"D1","first_page":"D764","last_page":"D775"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8151521682739258},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7870341539382935},{"id":"https://openalex.org/keywords/img","display_name":"IMG","score":0.6702970862388611},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.5507737398147583},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5484181642532349},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4068152606487274},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36646774411201477},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23026615381240845},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.11470913887023926}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8151521682739258},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7870341539382935},{"id":"https://openalex.org/C126249665","wikidata":"https://www.wikidata.org/wiki/Q3146723","display_name":"IMG","level":2,"score":0.6702970862388611},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.5507737398147583},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5484181642532349},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4068152606487274},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36646774411201477},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23026615381240845},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.11470913887023926},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005843","descriptor_name":"Geography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005843","descriptor_name":"Geography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005843","descriptor_name":"Geography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkaa946","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa946","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D764/35364297/gkaa946.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33137183","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33137183","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7778971","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7778971","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"doi:10.25504/fairsharing.2kia7t","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.2kia7t","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa946","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa946","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D764/35364297/gkaa946.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6800000071525574,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G7368046788","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3097008984.pdf","grobid_xml":"https://content.openalex.org/works/W3097008984.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W1504453842","https://openalex.org/W1547034848","https://openalex.org/W1552724685","https://openalex.org/W1966912927","https://openalex.org/W2019268064","https://openalex.org/W2023652460","https://openalex.org/W2029551594","https://openalex.org/W2050783903","https://openalex.org/W2119859604","https://openalex.org/W2124892349","https://openalex.org/W2138122982","https://openalex.org/W2142678478","https://openalex.org/W2169802985","https://openalex.org/W2169899471","https://openalex.org/W2173732482","https://openalex.org/W2227301701","https://openalex.org/W2245444176","https://openalex.org/W2464076762","https://openalex.org/W2514983714","https://openalex.org/W2543855063","https://openalex.org/W2555549071","https://openalex.org/W2562468253","https://openalex.org/W2579191841","https://openalex.org/W2613232244","https://openalex.org/W2732139758","https://openalex.org/W2736920791","https://openalex.org/W2740966378","https://openalex.org/W2750954606","https://openalex.org/W2769959144","https://openalex.org/W2781485689","https://openalex.org/W2801635012","https://openalex.org/W2806336739","https://openalex.org/W2859249641","https://openalex.org/W2895532240","https://openalex.org/W2898201023","https://openalex.org/W2898402099","https://openalex.org/W2900402284","https://openalex.org/W2904384071","https://openalex.org/W2913714888","https://openalex.org/W2918679115","https://openalex.org/W2934099045","https://openalex.org/W2940459311","https://openalex.org/W2941199225","https://openalex.org/W2945442113","https://openalex.org/W2949365680","https://openalex.org/W2963011827","https://openalex.org/W2968063528","https://openalex.org/W2971895170","https://openalex.org/W2975081233","https://openalex.org/W2992184520","https://openalex.org/W2996065690","https://openalex.org/W3002419408","https://openalex.org/W3010256223","https://openalex.org/W3023436389","https://openalex.org/W3024957638","https://openalex.org/W3027089056","https://openalex.org/W3036430987","https://openalex.org/W3037496568","https://openalex.org/W3041848892","https://openalex.org/W3081166727","https://openalex.org/W3104596207","https://openalex.org/W3118048495","https://openalex.org/W3147885797","https://openalex.org/W4211141369","https://openalex.org/W4236865533","https://openalex.org/W4239871258","https://openalex.org/W6761440651","https://openalex.org/W6805898852","https://openalex.org/W6991312525"],"related_works":["https://openalex.org/W123362829","https://openalex.org/W3157246076","https://openalex.org/W4399335168","https://openalex.org/W2110444102","https://openalex.org/W1994449010","https://openalex.org/W1992950355","https://openalex.org/W4381279187","https://openalex.org/W2115108201","https://openalex.org/W2013063066","https://openalex.org/W3134563641"],"abstract_inverted_index":{"Viruses":[0],"are":[1,123,136,191],"integral":[2],"components":[3],"of":[4,14,45,63,75,78,95],"all":[5],"ecosystems":[6],"and":[7,24,38,82,135,156,171,187],"microbiomes":[8],"on":[9,175],"Earth.":[10],"Through":[11],"pervasive":[12],"infections":[13],"their":[15],"cellular":[16],"hosts,":[17],"viruses":[18],"can":[19],"reshape":[20],"microbial":[21],"community":[22],"structure":[23],"drive":[25],"global":[26],"nutrient":[27],"cycling.":[28],"Over":[29],"the":[30,53,60,72,92,99,152,188],"past":[31],"decade,":[32],"viral":[33,46,64,87,107,128],"sequences":[34,65,96],"identified":[35],"from":[36,67],"genomes":[37,88],"metagenomes":[39],"have":[40],"provided":[41,57],"an":[42],"unprecedented":[43],"view":[44],"genome":[47,133,144,176],"diversity":[48],"in":[49,121],"nature.":[50],"Since":[51],"2016,":[52],"IMG/VR":[54,122,163,181],"database":[55],"has":[56],"access":[58],"to":[59,98,167,193],"largest":[61],"collection":[62],"obtained":[66],"(meta)genomes.":[68],"Here,":[69],"we":[70],"present":[71],"third":[73],"version":[74],"IMG/VR,":[76],"composed":[77],"18":[79],"373":[80],"cultivated":[81],"2":[83],"314":[84],"329":[85],"uncultivated":[86],"(UViGs),":[89],"nearly":[90],"tripling":[91],"total":[93],"number":[94],"compared":[97],"previous":[100],"version.":[101],"These":[102],"clustered":[103],"into":[104],"935":[105],"362":[106],"Operational":[108],"Taxonomic":[109],"Units":[110],"(vOTUs),":[111],"including":[112,143],"188":[113],"930":[114],"with":[115,138],"two":[116],"or":[117,132],"more":[118],"members.":[119],"UViGs":[120,173],"now":[124],"reported":[125],"as":[126],"single":[127],"contigs,":[129],"integrated":[130],"proviruses":[131],"bins,":[134],"annotated":[137],"a":[139],"new":[140,162],"standardized":[141],"pipeline":[142],"quality":[145],"estimation":[146],"using":[147],"CheckV,":[148],"taxonomic":[149],"classification":[150],"reflecting":[151],"latest":[153],"ICTV":[154],"update,":[155],"expanded":[157],"host":[158],"taxonomy":[159],"prediction.":[160],"The":[161],"interface":[164],"enables":[165],"users":[166],"efficiently":[168],"browse,":[169],"search,":[170],"select":[172],"based":[174],"features":[177],"and/or":[178],"sequence":[179],"similarity.":[180],"v3":[182],"is":[183],"available":[184,192],"at":[185,195],"https://img.jgi.doe.gov/vr,":[186],"underlying":[189],"data":[190],"download":[194],"https://genome.jgi.doe.gov/portal/IMG_VR.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":33},{"year":2024,"cited_by_count":67},{"year":2023,"cited_by_count":93},{"year":2022,"cited_by_count":100},{"year":2021,"cited_by_count":58},{"year":2020,"cited_by_count":4}],"updated_date":"2026-03-06T13:50:29.536080","created_date":"2020-11-09T00:00:00"}
