{"id":"https://openalex.org/W3095189661","doi":"https://doi.org/10.1093/nar/gkaa943","title":"ATACdb: a comprehensive human chromatin accessibility database","display_name":"ATACdb: a comprehensive human chromatin accessibility database","publication_year":2020,"publication_date":"2020-10-29","ids":{"openalex":"https://openalex.org/W3095189661","doi":"https://doi.org/10.1093/nar/gkaa943","mag":"3095189661","pmid":"https://pubmed.ncbi.nlm.nih.gov/33125076"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa943","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa943","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D55/35364111/gkaa943.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/D1/D55/35364111/gkaa943.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102921405","display_name":"Fan Wang","orcid":"https://orcid.org/0000-0003-3833-4551"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Wang","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017972521","display_name":"Xuefeng Bai","orcid":"https://orcid.org/0000-0002-9973-5247"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuefeng Bai","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103325466","display_name":"Yuezhu Wang","orcid":"https://orcid.org/0009-0009-4095-6473"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuezhu Wang","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101656020","display_name":"Yong Jiang","orcid":"https://orcid.org/0000-0002-0163-5089"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong Jiang","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067658463","display_name":"Bo Ai","orcid":"https://orcid.org/0000-0003-3115-8524"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Ai","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100419755","display_name":"Yong Zhang","orcid":"https://orcid.org/0000-0001-9950-1793"},"institutions":[{"id":"https://openalex.org/I921716337","display_name":"Northeast Petroleum University","ror":"https://ror.org/03net5943","country_code":"CN","type":"education","lineage":["https://openalex.org/I921716337"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong Zhang","raw_affiliation_strings":["School of Physics and Electronic Engineering, Northeast Petroleum University, Daqing 163318, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Physics and Electronic Engineering, Northeast Petroleum University, Daqing 163318, China","institution_ids":["https://openalex.org/I921716337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050819859","display_name":"Yuejuan Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuejuan Liu","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059646863","display_name":"Mingcong Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingcong Xu","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115694793","display_name":"Qiuyu Wang","orcid":"https://orcid.org/0009-0006-9422-7223"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiuyu Wang","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106480774","display_name":"Xiaole Han","orcid":"https://orcid.org/0000-0002-2945-5223"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaole Han","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100778410","display_name":"Qi Pan","orcid":"https://orcid.org/0000-0003-2543-2937"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Pan","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101470623","display_name":"Yanyu Li","orcid":"https://orcid.org/0000-0002-1416-9216"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanyu Li","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050647868","display_name":"Xuecang Li","orcid":"https://orcid.org/0000-0002-8755-9530"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuecang Li","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100409879","display_name":"Jian Zhang","orcid":"https://orcid.org/0000-0001-7217-0111"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Zhang","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101748481","display_name":"Jun Zhao","orcid":"https://orcid.org/0000-0002-6671-0000"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhao","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100614429","display_name":"Guorui Zhang","orcid":"https://orcid.org/0000-0002-7124-1309"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guorui Zhang","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074727448","display_name":"Chenchen Feng","orcid":"https://orcid.org/0000-0002-1854-356X"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenchen Feng","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058166806","display_name":"Jiang Zhu","orcid":"https://orcid.org/0000-0001-9764-8281"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiang Zhu","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100728506","display_name":"Chunquan Li","orcid":"https://orcid.org/0000-0002-4700-5496"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chunquan Li","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"raw_orcid":"https://orcid.org/0000-0002-4700-5496","affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":19,"corresponding_author_ids":["https://openalex.org/A5100728506"],"corresponding_institution_ids":["https://openalex.org/I156144747"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.0838,"has_fulltext":true,"cited_by_count":74,"citation_normalized_percentile":{"value":0.87894585,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"49","issue":"D1","first_page":"D55","last_page":"D64"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12820","display_name":"Chromatin Remodeling and Cancer","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.9095319509506226},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7057808637619019},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5975445508956909},{"id":"https://openalex.org/keywords/chia-pet","display_name":"ChIA-PET","score":0.5661412477493286},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.5185033082962036},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4097987115383148},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35987454652786255},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.32924091815948486},{"id":"https://openalex.org/keywords/chromatin-remodeling","display_name":"Chromatin remodeling","score":0.21379250288009644}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.9095319509506226},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7057808637619019},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5975445508956909},{"id":"https://openalex.org/C67258246","wikidata":"https://www.wikidata.org/wiki/Q5065897","display_name":"ChIA-PET","level":5,"score":0.5661412477493286},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.5185033082962036},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4097987115383148},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35987454652786255},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.32924091815948486},{"id":"https://openalex.org/C167227067","wikidata":"https://www.wikidata.org/wiki/Q5113739","display_name":"Chromatin remodeling","level":4,"score":0.21379250288009644}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkaa943","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa943","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D55/35364111/gkaa943.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33125076","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33125076","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:6699112","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7779059","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7779059","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7779059","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa943","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa943","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D55/35364111/gkaa943.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G6326061351","display_name":null,"funder_award_id":"61601150","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8092982729","display_name":null,"funder_award_id":"81572341","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3095189661.pdf","grobid_xml":"https://content.openalex.org/works/W3095189661.grobid-xml"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W1498148355","https://openalex.org/W1531821806","https://openalex.org/W1602702667","https://openalex.org/W1964963969","https://openalex.org/W1971617105","https://openalex.org/W2008051478","https://openalex.org/W2018838463","https://openalex.org/W2033904805","https://openalex.org/W2060484997","https://openalex.org/W2086548325","https://openalex.org/W2094678200","https://openalex.org/W2096791516","https://openalex.org/W2102619694","https://openalex.org/W2108234281","https://openalex.org/W2111353388","https://openalex.org/W2116868464","https://openalex.org/W2117757143","https://openalex.org/W2121284504","https://openalex.org/W2122732537","https://openalex.org/W2123411711","https://openalex.org/W2124514674","https://openalex.org/W2140952049","https://openalex.org/W2140966642","https://openalex.org/W2149118429","https://openalex.org/W2149992227","https://openalex.org/W2157009395","https://openalex.org/W2161633633","https://openalex.org/W2165446840","https://openalex.org/W2170551349","https://openalex.org/W2170830174","https://openalex.org/W2171808845","https://openalex.org/W2248907500","https://openalex.org/W2259938310","https://openalex.org/W2280567170","https://openalex.org/W2281614104","https://openalex.org/W2336957559","https://openalex.org/W2337438739","https://openalex.org/W2544405043","https://openalex.org/W2625424984","https://openalex.org/W2741504317","https://openalex.org/W2755948321","https://openalex.org/W2758632170","https://openalex.org/W2760366406","https://openalex.org/W2760684090","https://openalex.org/W2767145741","https://openalex.org/W2770178180","https://openalex.org/W2794373801","https://openalex.org/W2806575716","https://openalex.org/W2875164144","https://openalex.org/W2886367104","https://openalex.org/W2892207539","https://openalex.org/W2898215009","https://openalex.org/W2898942820","https://openalex.org/W2900841953","https://openalex.org/W2901144895","https://openalex.org/W2902441926","https://openalex.org/W2925775506","https://openalex.org/W2941993016","https://openalex.org/W2944727022","https://openalex.org/W2951502983","https://openalex.org/W2953622121","https://openalex.org/W2963693022","https://openalex.org/W2980454008","https://openalex.org/W2989638633","https://openalex.org/W3005202690","https://openalex.org/W3006191517","https://openalex.org/W3031027624","https://openalex.org/W4377012855","https://openalex.org/W6744773252","https://openalex.org/W6774056929"],"related_works":["https://openalex.org/W2008077261","https://openalex.org/W3191994734","https://openalex.org/W2037920273","https://openalex.org/W4214521951","https://openalex.org/W4303699336","https://openalex.org/W4241694212","https://openalex.org/W4234876096","https://openalex.org/W4243928696","https://openalex.org/W3040477867","https://openalex.org/W1607718650"],"abstract_inverted_index":{"Accessible":[0],"chromatin":[1,49,68,110,144,164,177,191],"is":[2,181],"a":[3,14,46,59,79,89,128,182],"highly":[4],"informative":[5],"structural":[6],"feature":[7],"for":[8],"identifying":[9],"regulatory":[10,24],"elements,":[11],"which":[12],"provides":[13,127,139,170,186],"large":[15,60],"amount":[16,61],"of":[17,57,62,86,91,173],"information":[18],"about":[19],"transcriptional":[20],"activity":[21],"and":[22,39,71,74,166,196],"gene":[23],"mechanisms.":[25],"Human":[26],"ATAC-seq":[27,99],"datasets":[28,119],"are":[29],"accumulating":[30],"rapidly,":[31],"prompting":[32],"an":[33],"urgent":[34],"need":[35],"to":[36,72,122],"comprehensively":[37],"collect":[38],"effectively":[40],"process":[41,131],"these":[42,118],"data.":[43],"We":[44],"developed":[45],"comprehensive":[47,189],"human":[48,67],"accessibility":[50,69,111,145,178],"database":[51],"(ATACdb,":[52],"http://www.licpathway.net/ATACdb),":[53],"with":[54],"the":[55,123,187],"aim":[56],"providing":[58],"publicly":[63],"available":[64],"resources":[65],"on":[66],"data,":[70,192],"annotate":[73],"illustrate":[75],"potential":[76],"roles":[77],"in":[78,143],"tissue/cell":[80],"type-specific":[81],"manner.":[82],"The":[83],"current":[84],"version":[85],"ATACdb":[87,126,138,169,180],"documented":[88],"total":[90],"52":[92],"078":[93],"883":[94],"regions":[95],"from":[96,107,113],"over":[97,108],"1400":[98],"samples.":[100],"These":[101],"samples":[102,112],"have":[103],"been":[104],"manually":[105],"curated":[106],"2200":[109],"NCBI":[114],"GEO/SRA.":[115],"To":[116],"make":[117],"more":[120],"accessible":[121,190],"research":[124],"community,":[125],"quality":[129,134],"assurance":[130],"including":[132,147],"four":[133],"control":[135],"(QC)":[136],"metrics.":[137],"detailed":[140],"(epi)genetic":[141],"annotations":[142],"regions,":[146],"super-enhancers,":[148],"typical":[149],"enhancers,":[150],"transcription":[151],"factors":[152],"(TFs),":[153],"common":[154],"single-nucleotide":[155],"polymorphisms":[156],"(SNPs),":[157],"risk":[158],"SNPs,":[159,162],"eQTLs,":[160],"LD":[161],"methylations,":[163],"interactions":[165],"TADs.":[167],"Especially,":[168],"accurate":[171],"inference":[172],"TF":[174,194],"footprints":[175],"within":[176],"regions.":[179],"powerful":[183],"platform":[184],"that":[185],"most":[188],"QC,":[193],"footprint":[195],"various":[197],"other":[198],"annotations.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":32},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}