{"id":"https://openalex.org/W3093580068","doi":"https://doi.org/10.1093/nar/gkaa910","title":"PLncDB V2.0: a comprehensive encyclopedia of plant long noncoding RNAs","display_name":"PLncDB V2.0: a comprehensive encyclopedia of plant long noncoding RNAs","publication_year":2020,"publication_date":"2020-10-03","ids":{"openalex":"https://openalex.org/W3093580068","doi":"https://doi.org/10.1093/nar/gkaa910","mag":"3093580068","pmid":"https://pubmed.ncbi.nlm.nih.gov/33079992"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa910","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa910","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D1489/35363903/gkaa910.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/D1/D1489/35363903/gkaa910.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035364633","display_name":"Jingjing Jin","orcid":"https://orcid.org/0000-0001-9683-4402"},"institutions":[{"id":"https://openalex.org/I2800556661","display_name":"China Tobacco","ror":"https://ror.org/030d08e08","country_code":"CN","type":"government","lineage":["https://openalex.org/I2800556661"]},{"id":"https://openalex.org/I4210094602","display_name":"Tobacco Research Institute","ror":"https://ror.org/0099xbw16","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210094602","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingjing Jin","raw_affiliation_strings":["China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China"],"raw_orcid":"https://orcid.org/0000-0001-9683-4402","affiliations":[{"raw_affiliation_string":"China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I4210094602","https://openalex.org/I2800556661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028614369","display_name":"Peng L\u00fc","orcid":"https://orcid.org/0000-0002-9898-3951"},"institutions":[{"id":"https://openalex.org/I2800556661","display_name":"China Tobacco","ror":"https://ror.org/030d08e08","country_code":"CN","type":"government","lineage":["https://openalex.org/I2800556661"]},{"id":"https://openalex.org/I4210094602","display_name":"Tobacco Research Institute","ror":"https://ror.org/0099xbw16","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210094602","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Lu","raw_affiliation_strings":["China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I4210094602","https://openalex.org/I2800556661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020086929","display_name":"Yalong Xu","orcid":"https://orcid.org/0000-0002-9562-6158"},"institutions":[{"id":"https://openalex.org/I2800556661","display_name":"China Tobacco","ror":"https://ror.org/030d08e08","country_code":"CN","type":"government","lineage":["https://openalex.org/I2800556661"]},{"id":"https://openalex.org/I4210094602","display_name":"Tobacco Research Institute","ror":"https://ror.org/0099xbw16","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210094602","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yalong Xu","raw_affiliation_strings":["China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I4210094602","https://openalex.org/I2800556661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064547828","display_name":"Zefeng Li","orcid":"https://orcid.org/0000-0001-7373-3115"},"institutions":[{"id":"https://openalex.org/I2800556661","display_name":"China Tobacco","ror":"https://ror.org/030d08e08","country_code":"CN","type":"government","lineage":["https://openalex.org/I2800556661"]},{"id":"https://openalex.org/I4210094602","display_name":"Tobacco Research Institute","ror":"https://ror.org/0099xbw16","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210094602","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zefeng Li","raw_affiliation_strings":["China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I4210094602","https://openalex.org/I2800556661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005654068","display_name":"Shizhou Yu","orcid":"https://orcid.org/0000-0002-2162-3819"},"institutions":[{"id":"https://openalex.org/I2800556661","display_name":"China Tobacco","ror":"https://ror.org/030d08e08","country_code":"CN","type":"government","lineage":["https://openalex.org/I2800556661"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shizhou Yu","raw_affiliation_strings":["Molecular Genetics Key Laboratory of China Tobacco, Guizhou Academy of Tobacco, Guiyang 550081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Genetics Key Laboratory of China Tobacco, Guizhou Academy of Tobacco, Guiyang 550081, China","institution_ids":["https://openalex.org/I2800556661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012820890","display_name":"Jun S. Liu","orcid":"https://orcid.org/0000-0002-4450-7239"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210158190","display_name":"Institute of Crop Sciences","ror":"https://ror.org/051abs833","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210158190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Liu","raw_affiliation_strings":["National Key Facility for Crop Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Key Facility for Crop Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210158190","https://openalex.org/I4210138501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100332018","display_name":"Huan Wang","orcid":"https://orcid.org/0000-0002-7010-3086"},"institutions":[{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210167153","display_name":"Biotechnology Research Institute","ror":"https://ror.org/05vm76w92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987","https://openalex.org/I4210167153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huan Wang","raw_affiliation_strings":["Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China","institution_ids":["https://openalex.org/I4210138501","https://openalex.org/I4210167153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065168048","display_name":"Nam\u2010Hai Chua","orcid":"https://orcid.org/0000-0002-8991-0355"},"institutions":[{"id":"https://openalex.org/I162266279","display_name":"Temasek Life Sciences Laboratory","ror":"https://ror.org/0574eex11","country_code":"SG","type":"facility","lineage":["https://openalex.org/I162266279"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I83399316","display_name":"Rockefeller University","ror":"https://ror.org/0420db125","country_code":"US","type":"education","lineage":["https://openalex.org/I83399316"]}],"countries":["SG","US"],"is_corresponding":false,"raw_author_name":"Nam-Hai Chua","raw_affiliation_strings":["Laboratory of Plant Molecular Biology, Rockefeller University, New York, NY, USA","Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Plant Molecular Biology, Rockefeller University, New York, NY, USA","institution_ids":["https://openalex.org/I83399316"]},{"raw_affiliation_string":"Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I162266279","https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083056712","display_name":"Peijian Cao","orcid":"https://orcid.org/0000-0001-9991-423X"},"institutions":[{"id":"https://openalex.org/I2800556661","display_name":"China Tobacco","ror":"https://ror.org/030d08e08","country_code":"CN","type":"government","lineage":["https://openalex.org/I2800556661"]},{"id":"https://openalex.org/I4210094602","display_name":"Tobacco Research Institute","ror":"https://ror.org/0099xbw16","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210094602","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Peijian Cao","raw_affiliation_strings":["China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China"],"raw_orcid":"https://orcid.org/0000-0001-9991-423X","affiliations":[{"raw_affiliation_string":"China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou 450001, China","institution_ids":["https://openalex.org/I4210094602","https://openalex.org/I2800556661"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5083056712"],"corresponding_institution_ids":["https://openalex.org/I2800556661","https://openalex.org/I4210094602"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":21.5919,"has_fulltext":true,"cited_by_count":170,"citation_normalized_percentile":{"value":0.99847286,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"49","issue":"D1","first_page":"D1489","last_page":"D1495"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9604637026786804},{"id":"https://openalex.org/keywords/encyclopedia","display_name":"Encyclopedia","score":0.6900079250335693},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5614662766456604},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5307193994522095},{"id":"https://openalex.org/keywords/small-nucleolar-rna","display_name":"Small nucleolar RNA","score":0.47372475266456604},{"id":"https://openalex.org/keywords/long-non-coding-rna","display_name":"Long non-coding RNA","score":0.4466349482536316},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.42017877101898193},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.41561371088027954},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.38227927684783936},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14390018582344055}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9604637026786804},{"id":"https://openalex.org/C148863701","wikidata":"https://www.wikidata.org/wiki/Q5292","display_name":"Encyclopedia","level":2,"score":0.6900079250335693},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5614662766456604},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5307193994522095},{"id":"https://openalex.org/C179255354","wikidata":"https://www.wikidata.org/wiki/Q284416","display_name":"Small nucleolar RNA","level":5,"score":0.47372475266456604},{"id":"https://openalex.org/C62203573","wikidata":"https://www.wikidata.org/wiki/Q15087973","display_name":"Long non-coding RNA","level":4,"score":0.4466349482536316},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.42017877101898193},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.41561371088027954},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.38227927684783936},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14390018582344055},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkaa910","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa910","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D1489/35363903/gkaa910.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33079992","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33079992","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7778960","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7778960","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa910","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa910","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D1489/35363903/gkaa910.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2250674499","display_name":null,"funder_award_id":"2016QNRC001","funder_id":"https://openalex.org/F4320311778","funder_display_name":"China Association for Science and Technology"},{"id":"https://openalex.org/G6432467938","display_name":null,"funder_award_id":"NRF-RSSS-002","funder_id":"https://openalex.org/F4320320709","funder_display_name":"National Research Foundation Singapore"}],"funders":[{"id":"https://openalex.org/F4320311778","display_name":"China Association for Science and Technology","ror":"https://ror.org/035vmht26"},{"id":"https://openalex.org/F4320320709","display_name":"National Research Foundation Singapore","ror":"https://ror.org/03cpyc314"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3093580068.pdf","grobid_xml":"https://content.openalex.org/works/W3093580068.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W949300305","https://openalex.org/W1884519301","https://openalex.org/W1897368039","https://openalex.org/W1998422171","https://openalex.org/W2002900187","https://openalex.org/W2075320162","https://openalex.org/W2094032514","https://openalex.org/W2102278945","https://openalex.org/W2104005232","https://openalex.org/W2106812975","https://openalex.org/W2111407873","https://openalex.org/W2114527699","https://openalex.org/W2119726708","https://openalex.org/W2122245399","https://openalex.org/W2125910143","https://openalex.org/W2128034264","https://openalex.org/W2133613866","https://openalex.org/W2135532051","https://openalex.org/W2138098955","https://openalex.org/W2141292707","https://openalex.org/W2159675211","https://openalex.org/W2162547088","https://openalex.org/W2224020790","https://openalex.org/W2336957559","https://openalex.org/W2366276793","https://openalex.org/W2600278560","https://openalex.org/W2607390107","https://openalex.org/W2610733803","https://openalex.org/W2616579180","https://openalex.org/W2618097618","https://openalex.org/W2732932929","https://openalex.org/W2739960938","https://openalex.org/W2741504317","https://openalex.org/W2767918570","https://openalex.org/W2801972999","https://openalex.org/W2805433820","https://openalex.org/W2805467558","https://openalex.org/W2807555625","https://openalex.org/W2896186218","https://openalex.org/W2899669628","https://openalex.org/W2899798803","https://openalex.org/W2910755031","https://openalex.org/W2926738804","https://openalex.org/W2930174085","https://openalex.org/W3042603387","https://openalex.org/W4256333965","https://openalex.org/W6738382159","https://openalex.org/W6806115372"],"related_works":["https://openalex.org/W2802705617","https://openalex.org/W4242611624","https://openalex.org/W14849116","https://openalex.org/W4400937039","https://openalex.org/W25403435","https://openalex.org/W2890134923","https://openalex.org/W2095206021","https://openalex.org/W3144341322","https://openalex.org/W2547129954","https://openalex.org/W2056330045"],"abstract_inverted_index":{"Long":[0,84],"noncoding":[1,85],"RNAs":[2],"(lncRNAs)":[3],"are":[4,150],"transcripts":[5],"longer":[6],"than":[7],"200":[8],"nucleotides":[9],"with":[10],"little":[11],"or":[12],"no":[13],"protein":[14],"coding":[15],"potential.":[16],"The":[17],"expanding":[18],"list":[19],"of":[20,25,34,53,65,73],"lncRNAs":[21,105,149],"and":[22,70,126,130,142,145,162,164,181,185],"accumulating":[23],"evidence":[24],"their":[26],"functions":[27],"in":[28,194],"plants":[29],"have":[30,47],"necessitated":[31],"the":[32,51,71,177],"creation":[33],"a":[35,63,94,187],"comprehensive":[36,188],"database":[37],"for":[38,67,106,148,153,176,190],"lncRNA":[39,45,54,117,179,192],"research.":[40],"However,":[41],"currently":[42,100],"available":[43],"plant":[44,108,178],"databases":[46],"some":[48,57],"deficiencies,":[49],"including":[50,123],"lack":[52,64],"data":[55,182],"from":[56,119],"model":[58],"plants,":[59],"uneven":[60],"annotation":[61,96],"standards,":[62],"visualization":[66],"expression":[68],"patterns,":[69],"absence":[72],"epigenetic":[74,131],"information.":[75],"To":[76],"overcome":[77],"these":[78],"problems,":[79],"we":[80],"upgraded":[81],"our":[82],"Plant":[83],"RNA":[86],"Database":[87],"(PLncDB,":[88],"http://plncdb.tobaccodb.org/),":[89],"which":[90],"was":[91],"based":[92,110],"on":[93,111],"uniform":[95],"pipeline.":[97],"PLncDB":[98,158,172],"V2.0":[99,159,173],"contains":[101],"1":[102],"246":[103],"372":[104],"80":[107],"species":[109],"13":[112],"834":[113],"RNA-Seq":[114],"datasets,":[115],"integrating":[116],"information":[118],"four":[120],"other":[121],"resources":[122],"EVLncRNAs,":[124],"RNAcentral":[125],"etc.":[127],"Expression":[128],"patterns":[129],"signals":[132],"can":[133],"be":[134],"visualized":[135],"using":[136],"multiple":[137],"tools":[138],"(JBrowse,":[139],"eFP":[140],"Browser":[141],"EPexplorer).":[143],"Targets":[144],"regulatory":[146],"networks":[147],"also":[151],"provided":[152],"function":[154],"exploration.":[155],"In":[156],"addition,":[157],"is":[160,174],"hierarchical":[161],"user-friendly":[163],"has":[165],"five":[166],"built-in":[167],"search":[168],"engines.":[169],"We":[170],"believe":[171],"useful":[175],"community":[180],"mining":[183],"studies":[184],"provides":[186],"resource":[189],"data-driven":[191],"research":[193],"plants.":[195]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":37},{"year":2024,"cited_by_count":30},{"year":2023,"cited_by_count":30},{"year":2022,"cited_by_count":43},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-28T09:10:13.091523","created_date":"2025-10-10T00:00:00"}
