{"id":"https://openalex.org/W3093740009","doi":"https://doi.org/10.1093/nar/gkaa899","title":"BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria","display_name":"BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria","publication_year":2020,"publication_date":"2020-10-01","ids":{"openalex":"https://openalex.org/W3093740009","doi":"https://doi.org/10.1093/nar/gkaa899","mag":"3093740009","pmid":"https://pubmed.ncbi.nlm.nih.gov/33084862"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa899","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa899","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D651/35363800/gkaa899.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/D1/D651/35363800/gkaa899.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039634399","display_name":"Jiawei Wang","orcid":"https://orcid.org/0000-0001-5940-8113"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jiawei Wang","raw_affiliation_strings":["Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia"],"raw_orcid":"https://orcid.org/0000-0001-5940-8113","affiliations":[{"raw_affiliation_string":"Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100462971","display_name":"Jiahui Li","orcid":"https://orcid.org/0000-0003-4817-220X"},"institutions":[{"id":"https://openalex.org/I27781120","display_name":"Wenzhou Medical University","ror":"https://ror.org/00rd5t069","country_code":"CN","type":"education","lineage":["https://openalex.org/I27781120"]},{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I2801769982","display_name":"First Affiliated Hospital of Wenzhou Medical University","ror":"https://ror.org/03cyvdv85","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2801769982"]},{"id":"https://openalex.org/I5343935","display_name":"Guilin University of Electronic Technology","ror":"https://ror.org/05arjae42","country_code":"CN","type":"education","lineage":["https://openalex.org/I5343935"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Jiahui Li","raw_affiliation_strings":["Department of Clinical Laboratory, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China","Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia","School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin\u00a0541004, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Laboratory, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China","institution_ids":["https://openalex.org/I27781120","https://openalex.org/I2801769982"]},{"raw_affiliation_string":"Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"raw_affiliation_string":"School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin\u00a0541004, China","institution_ids":["https://openalex.org/I5343935"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109039863","display_name":"Yi Hou","orcid":null},"institutions":[{"id":"https://openalex.org/I5343935","display_name":"Guilin University of Electronic Technology","ror":"https://ror.org/05arjae42","country_code":"CN","type":"education","lineage":["https://openalex.org/I5343935"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Hou","raw_affiliation_strings":["School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin\u00a0541004, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin\u00a0541004, China","institution_ids":["https://openalex.org/I5343935"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100719057","display_name":"Wei Dai","orcid":"https://orcid.org/0000-0003-1844-784X"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I5343935","display_name":"Guilin University of Electronic Technology","ror":"https://ror.org/05arjae42","country_code":"CN","type":"education","lineage":["https://openalex.org/I5343935"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Wei Dai","raw_affiliation_strings":["Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia","School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin\u00a0541004, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"raw_affiliation_string":"School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin\u00a0541004, China","institution_ids":["https://openalex.org/I5343935"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112687856","display_name":"Ruopeng Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I5343935","display_name":"Guilin University of Electronic Technology","ror":"https://ror.org/05arjae42","country_code":"CN","type":"education","lineage":["https://openalex.org/I5343935"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruopeng Xie","raw_affiliation_strings":["School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin\u00a0541004, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin\u00a0541004, China","institution_ids":["https://openalex.org/I5343935"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042243195","display_name":"Tatiana T. Marquez\u2010Lago","orcid":"https://orcid.org/0000-0003-3279-5592"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tatiana\u00a0T Marquez-Lago","raw_affiliation_strings":["Department of Cell, Developmental and Integrative Biology, School of Medicine, University of Alabama at Birmingham, AL, USA","Department of Genetics, School of Medicine, University of Alabama at Birmingham, AL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell, Developmental and Integrative Biology, School of Medicine, University of Alabama at Birmingham, AL, USA","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Alabama at Birmingham, AL, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042438246","display_name":"Andr\u00e9 Leier","orcid":"https://orcid.org/0000-0002-2647-2693"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 Leier","raw_affiliation_strings":["Department of Cell, Developmental and Integrative Biology, School of Medicine, University of Alabama at Birmingham, AL, USA","Department of Genetics, School of Medicine, University of Alabama at Birmingham, AL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell, Developmental and Integrative Biology, School of Medicine, University of Alabama at Birmingham, AL, USA","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Alabama at Birmingham, AL, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007267883","display_name":"Tieli Zhou","orcid":"https://orcid.org/0000-0002-2171-4710"},"institutions":[{"id":"https://openalex.org/I27781120","display_name":"Wenzhou Medical University","ror":"https://ror.org/00rd5t069","country_code":"CN","type":"education","lineage":["https://openalex.org/I27781120"]},{"id":"https://openalex.org/I2801769982","display_name":"First Affiliated Hospital of Wenzhou Medical University","ror":"https://ror.org/03cyvdv85","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2801769982"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tieli Zhou","raw_affiliation_strings":["Department of Clinical Laboratory, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Laboratory, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China","institution_ids":["https://openalex.org/I27781120","https://openalex.org/I2801769982"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064818269","display_name":"Von Vergel L Torres","orcid":"https://orcid.org/0000-0003-3387-1112"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Von Torres","raw_affiliation_strings":["Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054647731","display_name":"Iain D. Hay","orcid":"https://orcid.org/0000-0001-8797-6038"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Iain Hay","raw_affiliation_strings":["School of Biological Sciences, The University of Auckland, Auckland 1010, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, The University of Auckland, Auckland 1010, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032952385","display_name":"Christopher J. Stubenrauch","orcid":"https://orcid.org/0000-0003-4388-3184"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Christopher Stubenrauch","raw_affiliation_strings":["Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101575637","display_name":"Yanju Zhang","orcid":"https://orcid.org/0000-0002-8629-258X"},"institutions":[{"id":"https://openalex.org/I5343935","display_name":"Guilin University of Electronic Technology","ror":"https://ror.org/05arjae42","country_code":"CN","type":"education","lineage":["https://openalex.org/I5343935"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanju Zhang","raw_affiliation_strings":["School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin\u00a0541004, China"],"raw_orcid":"https://orcid.org/0000-0002-8629-258X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin\u00a0541004, China","institution_ids":["https://openalex.org/I5343935"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012709797","display_name":"Jiangning Song","orcid":"https://orcid.org/0000-0001-8031-9086"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210146297","display_name":"ARC Centre of Excellence in Advanced Molecular Imaging","ror":"https://ror.org/051e7s436","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1337719021","https://openalex.org/I2801453606","https://openalex.org/I4210132349","https://openalex.org/I4210146297","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jiangning Song","raw_affiliation_strings":["ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, VIC 3800, Australia","Infection and Immunity Program, Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, VIC 3800, Australia","Monash Centre for Data Science, Faculty of Information Technology, Monash University, VIC 3800, Australia"],"raw_orcid":"https://orcid.org/0000-0001-8031-9086","affiliations":[{"raw_affiliation_string":"ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, VIC 3800, Australia","institution_ids":["https://openalex.org/I4210146297","https://openalex.org/I56590836"]},{"raw_affiliation_string":"Infection and Immunity Program, Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, VIC 3800, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"raw_affiliation_string":"Monash Centre for Data Science, Faculty of Information Technology, Monash University, VIC 3800, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004968684","display_name":"Trevor Lithgow","orcid":"https://orcid.org/0000-0002-0102-7884"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Trevor Lithgow","raw_affiliation_strings":["Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia"],"raw_orcid":"https://orcid.org/0000-0002-0102-7884","affiliations":[{"raw_affiliation_string":"Infection and Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, VIC 3800, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5004968684","https://openalex.org/A5012709797","https://openalex.org/A5039634399"],"corresponding_institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I4210146297","https://openalex.org/I56590836"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.6037,"has_fulltext":false,"cited_by_count":63,"citation_normalized_percentile":{"value":0.90859906,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"49","issue":"D1","first_page":"D651","last_page":"D659"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8271563053131104},{"id":"https://openalex.org/keywords/secretion","display_name":"Secretion","score":0.7600351572036743},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.6417368650436401},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5914591550827026},{"id":"https://openalex.org/keywords/substrate","display_name":"Substrate (aquarium)","score":0.5316952466964722},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5213466882705688},{"id":"https://openalex.org/keywords/substrate-specificity","display_name":"Substrate specificity","score":0.454702228307724},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.2506755590438843},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.24592038989067078},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.17014992237091064},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13944822549819946},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.08361989259719849}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8271563053131104},{"id":"https://openalex.org/C49039625","wikidata":"https://www.wikidata.org/wiki/Q84230","display_name":"Secretion","level":2,"score":0.7600351572036743},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.6417368650436401},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5914591550827026},{"id":"https://openalex.org/C2777289219","wikidata":"https://www.wikidata.org/wiki/Q7632154","display_name":"Substrate (aquarium)","level":2,"score":0.5316952466964722},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5213466882705688},{"id":"https://openalex.org/C2994592520","wikidata":"https://www.wikidata.org/wiki/Q5090496","display_name":"Substrate specificity","level":3,"score":0.454702228307724},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.2506755590438843},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.24592038989067078},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.17014992237091064},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13944822549819946},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.08361989259719849}],"mesh":[{"descriptor_ui":"D006090","descriptor_name":"Gram-Negative Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006090","descriptor_name":"Gram-Negative Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006090","descriptor_name":"Gram-Negative Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkaa899","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa899","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D651/35363800/gkaa899.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33084862","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33084862","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:435cf37","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7778982","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7778982","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa899","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa899","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D651/35363800/gkaa899.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.699999988079071,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G4517041463","display_name":"An integrated virtual cell approach towards elucidating the systems pharmacology of antibiotics against Pseudomonas aeruginosa","funder_award_id":"1127948","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G730112965","display_name":"Integrative systems pharmacology, neutron reflectometry and molecular dynamics approaches to unravelling the interactions between polymyxins and bacterial membranes","funder_award_id":"1144652","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G8874312312","display_name":"NHMRC Program in Cellular Microbiology","funder_award_id":"1092262","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320320971","display_name":"Monash University","ror":"https://ror.org/02bfwt286"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1952228151","https://openalex.org/W1994902865","https://openalex.org/W2025767948","https://openalex.org/W2031611770","https://openalex.org/W2043764521","https://openalex.org/W2056351919","https://openalex.org/W2077904132","https://openalex.org/W2083917706","https://openalex.org/W2095867585","https://openalex.org/W2096525273","https://openalex.org/W2104189207","https://openalex.org/W2109028944","https://openalex.org/W2112504441","https://openalex.org/W2126478370","https://openalex.org/W2127774996","https://openalex.org/W2128601422","https://openalex.org/W2130599662","https://openalex.org/W2141885858","https://openalex.org/W2142678478","https://openalex.org/W2151831732","https://openalex.org/W2155320925","https://openalex.org/W2158714788","https://openalex.org/W2159775055","https://openalex.org/W2229090536","https://openalex.org/W2527411440","https://openalex.org/W2532873024","https://openalex.org/W2582563843","https://openalex.org/W2619363404","https://openalex.org/W2737918457","https://openalex.org/W2768723560","https://openalex.org/W2790865507","https://openalex.org/W2895921319","https://openalex.org/W2898364362","https://openalex.org/W2899105530","https://openalex.org/W2899903294","https://openalex.org/W2900569176","https://openalex.org/W2923643315","https://openalex.org/W2938574745","https://openalex.org/W2985884608","https://openalex.org/W3006279686","https://openalex.org/W3033931055","https://openalex.org/W3082296438","https://openalex.org/W3087613240","https://openalex.org/W3136918052","https://openalex.org/W4248735723","https://openalex.org/W6728760601","https://openalex.org/W6770425227"],"related_works":["https://openalex.org/W2065284647","https://openalex.org/W2050457088","https://openalex.org/W2354441856","https://openalex.org/W2152471247","https://openalex.org/W2475128168","https://openalex.org/W4327971719","https://openalex.org/W2117340465","https://openalex.org/W2046536786","https://openalex.org/W1981911623","https://openalex.org/W2587733587"],"abstract_inverted_index":{"Gram-negative":[0,115],"bacteria":[1],"utilize":[2],"secretion":[3,125,155],"systems":[4],"to":[5,23,37,71,106,145],"export":[6],"substrates":[7,18,52,74,147,165,187],"into":[8,14],"their":[9],"surrounding":[10],"environment":[11],"or":[12,152],"directly":[13],"neighboring":[15],"cells.":[16],"These":[17],"are":[19],"proteins":[20],"that":[21,101,180],"function":[22],"promote":[24],"bacterial":[25],"survival:":[26],"by":[27,59,149],"facilitating":[28],"nutrient":[29],"collection,":[30],"disabling":[31],"competitor":[32],"species":[33],"or,":[34],"for":[35,81],"pathogens,":[36],"disable":[38],"host":[39],"defenses.":[40],"Following":[41],"a":[42,48,88,97],"rapid":[43],"development":[44],"of":[45,51,91,163],"computational":[46],"techniques,":[47],"growing":[49],"number":[50],"have":[53,68,77],"been":[54,69],"discovered":[55],"and":[56,84,110,123,166,169,188],"subsequently":[57],"validated":[58],"wet":[60],"lab":[61],"experiments.":[62],"To":[63,127],"date,":[64],"several":[65],"online":[66,137],"databases":[67],"developed":[70,96],"catalogue":[72],"these":[73],"but":[75],"they":[76],"limited":[78],"user":[79],"options":[80],"in-depth":[82],"analysis,":[83],"typically":[85],"focus":[86],"on":[87],"single":[89],"type":[90,150,153],"secreted":[92,116,148,164],"substrate.":[93],"We":[94],"therefore":[95],"universal":[98],"platform,":[99],"BastionHub,":[100],"incorporates":[102],"extensive":[103],"functional":[104],"modules":[105],"facilitate":[107],"substrate":[108,117],"analysis":[109,172],"integrates":[111],"the":[112,134,143,159],"five":[113],"major":[114],"types":[118,121],"(i.e.":[119],"from":[120],"I-IV":[122],"VI":[124],"systems).":[126],"our":[128],"knowledge,":[129],"BastionHub":[130,174,192],"is":[131,141,193],"not":[132],"only":[133],"most":[135,160],"comprehensive":[136],"database":[138],"available,":[139],"it":[140],"also":[142],"first":[144],"incorporate":[146],"I":[151],"II":[154],"systems.":[156],"By":[157],"providing":[158],"up-to-date":[161],"details":[162],"state-of-the-art":[167],"prediction":[168],"visualized":[170],"relationship":[171],"tools,":[173],"will":[175],"be":[176],"an":[177],"important":[178],"platform":[179],"can":[181],"assist":[182],"biologists":[183],"in":[184],"uncovering":[185],"novel":[186],"formulating":[189],"new":[190],"hypotheses.":[191],"freely":[194],"available":[195],"at":[196],"http://bastionhub.erc.monash.edu/.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":8}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
