{"id":"https://openalex.org/W3093335355","doi":"https://doi.org/10.1093/nar/gkaa869","title":"mMGE: a database for human metagenomic extrachromosomal mobile genetic elements","display_name":"mMGE: a database for human metagenomic extrachromosomal mobile genetic elements","publication_year":2020,"publication_date":"2020-09-24","ids":{"openalex":"https://openalex.org/W3093335355","doi":"https://doi.org/10.1093/nar/gkaa869","mag":"3093335355","pmid":"https://pubmed.ncbi.nlm.nih.gov/33074335"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa869","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa869","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D783/35364057/gkaa869.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/D1/D783/35364057/gkaa869.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018847676","display_name":"Senying Lai","orcid":"https://orcid.org/0000-0003-0557-2393"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210085920","display_name":"Shanghai Institute for Science of Science","ror":"https://ror.org/004srxn73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210085920"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Senying Lai","raw_affiliation_strings":["Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai\u00a0200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai\u00a0200433, China","institution_ids":["https://openalex.org/I4210164150","https://openalex.org/I4210085920","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021764064","display_name":"Longhao Jia","orcid":"https://orcid.org/0000-0002-3490-840X"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210085920","display_name":"Shanghai Institute for Science of Science","ror":"https://ror.org/004srxn73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210085920"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Longhao Jia","raw_affiliation_strings":["Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai\u00a0200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai\u00a0200433, China","institution_ids":["https://openalex.org/I4210164150","https://openalex.org/I4210085920","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068122065","display_name":"Balakrishnan Subramanian","orcid":"https://orcid.org/0000-0001-8403-167X"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Balakrishnan Subramanian","raw_affiliation_strings":["Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Center for Artificial Intelligence Biology, Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei\u00a0430074, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Center for Artificial Intelligence Biology, Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017191357","display_name":"Shaojun Pan","orcid":"https://orcid.org/0000-0002-5270-5614"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210085920","display_name":"Shanghai Institute for Science of Science","ror":"https://ror.org/004srxn73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210085920"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaojun Pan","raw_affiliation_strings":["Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai\u00a0200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai\u00a0200433, China","institution_ids":["https://openalex.org/I4210164150","https://openalex.org/I4210085920","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101423619","display_name":"Jinglong Zhang","orcid":"https://orcid.org/0000-0001-6795-1423"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210085920","display_name":"Shanghai Institute for Science of Science","ror":"https://ror.org/004srxn73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210085920"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinglong Zhang","raw_affiliation_strings":["Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai\u00a0200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai\u00a0200433, China","institution_ids":["https://openalex.org/I4210164150","https://openalex.org/I4210085920","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046944569","display_name":"Yanqi Dong","orcid":"https://orcid.org/0009-0005-2900-5467"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210085920","display_name":"Shanghai Institute for Science of Science","ror":"https://ror.org/004srxn73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210085920"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanqi Dong","raw_affiliation_strings":["Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai\u00a0200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai\u00a0200433, China","institution_ids":["https://openalex.org/I4210164150","https://openalex.org/I4210085920","https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wei-Hua Chen","orcid":"https://orcid.org/0000-0001-5160-4398"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]},{"id":"https://openalex.org/I75955062","display_name":"Henan Normal University","ror":"https://ror.org/00s13br28","country_code":"CN","type":"education","lineage":["https://openalex.org/I75955062"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei-Hua Chen","raw_affiliation_strings":["College of Life Science, Henan Normal University, Xinxiang, Henan\u00a0453007, China","Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Center for Artificial Intelligence Biology, Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei\u00a0430074, China"],"raw_orcid":"https://orcid.org/0000-0001-5160-4398","affiliations":[{"raw_affiliation_string":"College of Life Science, Henan Normal University, Xinxiang, Henan\u00a0453007, China","institution_ids":["https://openalex.org/I75955062"]},{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Center for Artificial Intelligence Biology, Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049435754","display_name":"Xing\u2010Ming Zhao","orcid":"https://orcid.org/0000-0002-4531-3970"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210085920","display_name":"Shanghai Institute for Science of Science","ror":"https://ror.org/004srxn73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210085920"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xing-Ming Zhao","raw_affiliation_strings":["Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai\u00a0200433, China","Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Ministry of Education, Shanghai 200433,\u00a0China","Research Institute of Intelligent Complex System, Fudan University, Shanghai\u00a0200433, China"],"raw_orcid":"https://orcid.org/0000-0002-4531-3970","affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai\u00a0200433, China","institution_ids":["https://openalex.org/I4210164150","https://openalex.org/I4210085920","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Ministry of Education, Shanghai 200433,\u00a0China","institution_ids":[]},{"raw_affiliation_string":"Research Institute of Intelligent Complex System, Fudan University, Shanghai\u00a0200433, China","institution_ids":["https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5049435754"],"corresponding_institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4210085920","https://openalex.org/I4210164150","https://openalex.org/I47720641","https://openalex.org/I75955062"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.538,"has_fulltext":true,"cited_by_count":45,"citation_normalized_percentile":{"value":0.92850459,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"49","issue":"D1","first_page":"D783","last_page":"D791"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/extrachromosomal-dna","display_name":"Extrachromosomal DNA","score":0.9203040599822998},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8877063989639282},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8668363094329834},{"id":"https://openalex.org/keywords/mobile-genetic-elements","display_name":"Mobile genetic elements","score":0.8278852105140686},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5814267992973328},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5402377247810364},{"id":"https://openalex.org/keywords/plasmid","display_name":"Plasmid","score":0.4498611092567444},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4005941152572632},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.40010324120521545},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3826272487640381},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3313142955303192},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.12899520993232727}],"concepts":[{"id":"https://openalex.org/C89684784","wikidata":"https://www.wikidata.org/wiki/Q5422184","display_name":"Extrachromosomal DNA","level":4,"score":0.9203040599822998},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8877063989639282},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8668363094329834},{"id":"https://openalex.org/C132533263","wikidata":"https://www.wikidata.org/wiki/Q2347362","display_name":"Mobile genetic elements","level":4,"score":0.8278852105140686},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5814267992973328},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5402377247810364},{"id":"https://openalex.org/C22744801","wikidata":"https://www.wikidata.org/wiki/Q172778","display_name":"Plasmid","level":3,"score":0.4498611092567444},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4005941152572632},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.40010324120521545},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3826272487640381},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3313142955303192},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.12899520993232727}],"mesh":[{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002877","descriptor_name":"Chromosomes, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018594","descriptor_name":"Human Body","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018594","descriptor_name":"Human Body","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018594","descriptor_name":"Human Body","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020071","descriptor_name":"Interspersed Repetitive Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020071","descriptor_name":"Interspersed Repetitive Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020071","descriptor_name":"Interspersed Repetitive Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkaa869","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa869","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D783/35364057/gkaa869.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33074335","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33074335","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7778953","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7778953","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa869","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa869","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D783/35364057/gkaa869.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1307575636","display_name":"\u9762\u5411\u8111\u75be\u75c5\u7684\u4eba\u4f53\u80a0\u9053\u5fae\u751f\u7269\u7ec4\u5b66\u6570\u636e\u6316\u6398\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61932008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1370989627","display_name":null,"funder_award_id":"2018YFC0910502","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G1549605100","display_name":null,"funder_award_id":"2018YFC0910503","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3871257053","display_name":null,"funder_award_id":"61932008, 61772368","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5154848714","display_name":null,"funder_award_id":"2018SHZDZX01","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5408626105","display_name":null,"funder_award_id":"2019YFA0905601","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5532120","display_name":null,"funder_award_id":"2018YFC0910502","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G775243255","display_name":"\u57fa\u4e8e\u591a\u6e90\u6570\u636e\u6574\u5408\u7684\u8010\u836f\u57fa\u56e0\u8bc6\u522b\u7b97\u6cd5\u7814\u7a76","funder_award_id":"61772368","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8899475930","display_name":null,"funder_award_id":"2018SHZDZX01","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3093335355.pdf","grobid_xml":"https://content.openalex.org/works/W3093335355.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W1584790813","https://openalex.org/W2027831845","https://openalex.org/W2055043387","https://openalex.org/W2055666215","https://openalex.org/W2081319466","https://openalex.org/W2102619694","https://openalex.org/W2115590956","https://openalex.org/W2119859604","https://openalex.org/W2121832839","https://openalex.org/W2124166542","https://openalex.org/W2127391962","https://openalex.org/W2127774996","https://openalex.org/W2133790733","https://openalex.org/W2137153541","https://openalex.org/W2138122982","https://openalex.org/W2139118683","https://openalex.org/W2143485490","https://openalex.org/W2149559438","https://openalex.org/W2151831732","https://openalex.org/W2169899471","https://openalex.org/W2170551349","https://openalex.org/W2224056471","https://openalex.org/W2303656007","https://openalex.org/W2340022657","https://openalex.org/W2416209486","https://openalex.org/W2460813857","https://openalex.org/W2521169042","https://openalex.org/W2545536333","https://openalex.org/W2608965099","https://openalex.org/W2612402838","https://openalex.org/W2732139758","https://openalex.org/W2732496903","https://openalex.org/W2740966378","https://openalex.org/W2756958651","https://openalex.org/W2769959144","https://openalex.org/W2770886876","https://openalex.org/W2772934464","https://openalex.org/W2788248676","https://openalex.org/W2800015127","https://openalex.org/W2883838322","https://openalex.org/W2891135984","https://openalex.org/W2899955710","https://openalex.org/W2900402284","https://openalex.org/W2900629010","https://openalex.org/W2904384071","https://openalex.org/W2909601828","https://openalex.org/W2922563085","https://openalex.org/W2923823616","https://openalex.org/W2941342985","https://openalex.org/W2942757983","https://openalex.org/W2943223175","https://openalex.org/W2947249403","https://openalex.org/W2949831026","https://openalex.org/W2951785081","https://openalex.org/W2951912016","https://openalex.org/W2953008890","https://openalex.org/W2954230456","https://openalex.org/W2970367351","https://openalex.org/W2978742879","https://openalex.org/W2979358136","https://openalex.org/W2990215402","https://openalex.org/W3023436389","https://openalex.org/W3033129278","https://openalex.org/W3081166727","https://openalex.org/W3118048495","https://openalex.org/W4211208250","https://openalex.org/W4394666350","https://openalex.org/W6674561012","https://openalex.org/W6753451743"],"related_works":["https://openalex.org/W2098901246","https://openalex.org/W2130917874","https://openalex.org/W2302465216","https://openalex.org/W2951896138","https://openalex.org/W4243711963","https://openalex.org/W2807940505","https://openalex.org/W2893707897","https://openalex.org/W2087676170","https://openalex.org/W4386346519","https://openalex.org/W3093335355"],"abstract_inverted_index":{"Extrachromosomal":[0],"mobile":[1],"genetic":[2],"elements":[3],"(eMGEs),":[4],"including":[5,67,115],"phages":[6],"and":[7,21,40,71,122,133,139,174,185],"plasmids,":[8],"that":[9],"can":[10,160],"move":[11],"across":[12,134],"different":[13],"microbes,":[14],"play":[15],"important":[16],"roles":[17],"in":[18,43,165],"genome":[19],"evolution":[20],"shaping":[22],"the":[23,88,112,129],"structure":[24],"of":[25,49,52,62,80,111,148],"microbial":[26],"communities.":[27],"However,":[28],"we":[29,56],"still":[30],"know":[31],"very":[32],"little":[33],"about":[34],"eMGEs,":[35,66],"especially":[36],"their":[37,123,154],"abundances,":[38],"distributions":[39],"putative":[41,146],"functions":[42],"microbiomes.":[44],"Thus,":[45],"a":[46,59,182,186],"comprehensive":[47,60],"description":[48],"eMGEs":[50,89,114,149],"is":[51,179,198],"great":[53],"utility.":[54],"Here":[55],"present":[57],"mMGE,":[58],"catalog":[61],"517":[63],"251":[64],"non-redundant":[65],"92":[68],"492":[69],"plasmids":[70],"424":[72],"759":[73],"phages,":[74],"derived":[75],"from":[76],"diverse":[77],"body":[78],"sites":[79],"66":[81],"425":[82],"human":[83,151],"metagenomic":[84,172],"samples.":[85],"About":[86],"half":[87],"could":[90],"be":[91,161],"further":[92],"grouped":[93],"into":[94],"70":[95],"074":[96],"clusters":[97,105],"using":[98],"relaxed":[99],"criteria":[100],"(referred":[101],"as":[102,169],"to":[103,144,192],"eMGE":[104,138,140,158,170],"below).":[106],"We":[107,126],"provide":[108],"extensive":[109],"annotations":[110],"identified":[113],"sequence":[116],"characteristics,":[117],"taxonomy":[118],"affiliation,":[119],"gene":[120],"contents":[121,195],"prokaryotic":[124],"hosts.":[125,176],"also":[127],"calculate":[128],"prevalence,":[130],"both":[131],"within":[132],"samples":[135,173],"for":[136,201],"each":[137],"cluster,":[141],"enabling":[142],"users":[143],"see":[145],"associations":[147],"with":[150,181],"phenotypes":[152],"or":[153,163],"distribution":[155],"preferences.":[156],"All":[157],"records":[159],"browsed":[162],"queried":[164],"multiple":[166],"ways,":[167],"such":[168],"clusters,":[171],"associated":[175],"The":[177],"mMGE":[178,197],"equipped":[180],"user-friendly":[183],"interface":[184],"BLAST":[187],"server,":[188],"facilitating":[189],"easy":[190],"access/queries":[191],"all":[193],"its":[194],"easily.":[196],"freely":[199],"available":[200],"academic":[202],"use":[203],"at:":[204],"https://mgedb.comp-sysbio.org.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":5}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
