{"id":"https://openalex.org/W3087570014","doi":"https://doi.org/10.1093/nar/gkaa742","title":"dbCAN-PUL: a database of experimentally characterized CAZyme gene clusters and their substrates","display_name":"dbCAN-PUL: a database of experimentally characterized CAZyme gene clusters and their substrates","publication_year":2020,"publication_date":"2020-08-26","ids":{"openalex":"https://openalex.org/W3087570014","doi":"https://doi.org/10.1093/nar/gkaa742","mag":"3087570014","pmid":"https://pubmed.ncbi.nlm.nih.gov/32941621"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa742","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa742","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D523/35363998/gkaa742.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/D1/D523/35363998/gkaa742.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019076287","display_name":"Catherine Ausland","orcid":null},"institutions":[{"id":"https://openalex.org/I102502594","display_name":"Northern Illinois University","ror":"https://ror.org/012wxa772","country_code":"US","type":"education","lineage":["https://openalex.org/I102502594"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Catherine Ausland","raw_affiliation_strings":["Department of Biological Sciences, Northern Illinois University, DeKalb, IL 60115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Northern Illinois University, DeKalb, IL 60115, USA","institution_ids":["https://openalex.org/I102502594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073455841","display_name":"Jinfang Zheng","orcid":"https://orcid.org/0000-0001-5966-7713"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinfang Zheng","raw_affiliation_strings":["Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036880760","display_name":"Haidong Yi","orcid":"https://orcid.org/0000-0002-2591-1922"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haidong Yi","raw_affiliation_strings":["Department of Computer Science, University of North Carolina at Chapel Hill,\u00a0Chapel Hill,\u00a0NC 27599, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of North Carolina at Chapel Hill,\u00a0Chapel Hill,\u00a0NC 27599, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101886115","display_name":"Bowen Yang","orcid":"https://orcid.org/0000-0002-5671-0680"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bowen Yang","raw_affiliation_strings":["Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029727052","display_name":"Li Tang","orcid":"https://orcid.org/0000-0001-5929-6975"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tang Li","raw_affiliation_strings":["Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039641831","display_name":"Xuehuan Feng","orcid":"https://orcid.org/0000-0002-0732-9322"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xuehuan Feng","raw_affiliation_strings":["Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091398210","display_name":"Bo Zheng","orcid":"https://orcid.org/0000-0002-5337-5477"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bo Zheng","raw_affiliation_strings":["Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090843422","display_name":"Yanbin Yin","orcid":"https://orcid.org/0000-0001-7667-881X"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yanbin Yin","raw_affiliation_strings":["Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA"],"raw_orcid":"https://orcid.org/0000-0001-7667-881X","affiliations":[{"raw_affiliation_string":"Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska, Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5090843422"],"corresponding_institution_ids":["https://openalex.org/I114395901"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.5193,"has_fulltext":true,"cited_by_count":122,"citation_normalized_percentile":{"value":0.972372,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"49","issue":"D1","first_page":"D523","last_page":"D528"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11617","display_name":"Enzyme Production and Characterization","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8703972101211548},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8503916263580322},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6912773847579956},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6003313660621643},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4898547828197479},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.46703287959098816},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4616495668888092},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.45936742424964905},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.4500744640827179},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.44420427083969116},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3901388347148895},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35676395893096924},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.29476699233055115},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.0929839015007019},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.08586952090263367}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8703972101211548},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8503916263580322},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6912773847579956},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6003313660621643},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4898547828197479},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.46703287959098816},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4616495668888092},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.45936742424964905},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.4500744640827179},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.44420427083969116},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3901388347148895},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35676395893096924},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.29476699233055115},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0929839015007019},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.08586952090263367}],"mesh":[{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D041963","descriptor_name":"Bacteroidetes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D041963","descriptor_name":"Bacteroidetes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D041963","descriptor_name":"Bacteroidetes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D041963","descriptor_name":"Bacteroidetes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056426","descriptor_name":"Genetic Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056426","descriptor_name":"Genetic Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056426","descriptor_name":"Genetic Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056426","descriptor_name":"Genetic Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkaa742","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa742","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D523/35363998/gkaa742.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:32941621","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32941621","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7778981","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7778981","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa742","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa742","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D523/35363998/gkaa742.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1801283323","display_name":null,"funder_award_id":"R01 GM140370","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2316702348","display_name":null,"funder_award_id":"2019-YIN","funder_id":"https://openalex.org/F4320310264","funder_display_name":"University of Nebraska-Lincoln"},{"id":"https://openalex.org/G5055379714","display_name":null,"funder_award_id":"DBI-1933521","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5466028691","display_name":"CAREER: Evolutionary Genomics of Enzymes for Complex Carbohydrate Metabolism","funder_award_id":"1933521","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5827042519","display_name":null,"funder_award_id":"58-8042-9-089","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G6671297155","display_name":null,"funder_award_id":"CAREER","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320310264","display_name":"University of Nebraska-Lincoln","ror":"https://ror.org/043mer456"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3087570014.pdf","grobid_xml":"https://content.openalex.org/works/W3087570014.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1984600160","https://openalex.org/W2028935316","https://openalex.org/W2069344532","https://openalex.org/W2085926377","https://openalex.org/W2103539617","https://openalex.org/W2109019999","https://openalex.org/W2122559203","https://openalex.org/W2133865221","https://openalex.org/W2171908015","https://openalex.org/W2322228166","https://openalex.org/W2463431039","https://openalex.org/W2544180383","https://openalex.org/W2579986502","https://openalex.org/W2761566426","https://openalex.org/W2766775456","https://openalex.org/W2803787045","https://openalex.org/W2887228696","https://openalex.org/W2887944254","https://openalex.org/W2916965173","https://openalex.org/W2943693794","https://openalex.org/W4238889778"],"related_works":["https://openalex.org/W2506632566","https://openalex.org/W2138891196","https://openalex.org/W2061611230","https://openalex.org/W2108491719","https://openalex.org/W2926533301","https://openalex.org/W2005244175","https://openalex.org/W1585743302","https://openalex.org/W2404565489","https://openalex.org/W2167996728","https://openalex.org/W1970582053"],"abstract_inverted_index":{"PULs":[0,26,35,70],"(polysaccharide":[1],"utilization":[2],"loci)":[3],"are":[4],"discrete":[5],"gene":[6,145],"clusters":[7,146],"of":[8,96,143],"CAZymes":[9,134],"(Carbohydrate":[10],"Active":[11],"EnZymes)":[12],"and":[13,21,44,77,84,123,138,154,183,191],"other":[14,37,81,139,188],"genes":[15],"that":[16,46,113],"work":[17],"together":[18],"to":[19,48,65,80,129,163],"digest":[20],"utilize":[22],"carbohydrate":[23],"substrates.":[24],"While":[25],"have":[27,58],"been":[28],"extensively":[29],"characterized":[30],"in":[31,51,147,170],"Bacteroidetes,":[32],"there":[33],"exist":[34],"from":[36,71],"bacterial":[38],"phyla,":[39],"as":[40,42,118],"well":[41],"archaea":[43],"metagenomes,":[45],"remain":[47],"be":[49,177],"catalogued":[50],"a":[52],"database":[53,62],"for":[54,110,133,161,181],"efficient":[55],"retrieval.":[56],"We":[57],"developed":[59],"an":[60,178],"online":[61,82],"dbCAN-PUL":[63,87,175],"(http://bcb.unl.edu/dbCAN_PUL/)":[64],"display":[66],"experimentally":[67],"verified":[68],"CAZyme-containing":[69],"literature":[72],"with":[73],"pertinent":[74],"metadata,":[75],"sequences,":[76],"annotation.":[78],"Compared":[79],"CAZyme":[83,182],"PUL":[85,97,112,168,184],"resources,":[86],"has":[88],"the":[89],"following":[90],"new":[91],"features:":[92],"(i)":[93],"Batch":[94],"download":[95],"data":[98],"by":[99],"target":[100],"substrate,":[101],"species/genome,":[102],"genus,":[103],"or":[104],"experimental":[105,120],"characterization":[106,121],"method;":[107],"(ii)":[108],"Annotation":[109],"each":[111],"displays":[114],"associated":[115],"metadata":[116],"such":[117],"substrate(s),":[119],"method(s)":[122],"protein":[124],"sequence":[125],"information,":[126],"(iii)":[127],"Links":[128],"external":[130],"annotation":[131],"pages":[132],"(CAZy),":[135],"transporters":[136],"(UniProt)":[137],"genes,":[140],"(iv)":[141],"Display":[142],"homologous":[144],"GenBank":[148],"sequences":[149,166],"via":[150],"integrated":[151,157],"MultiGeneBlast":[152],"tool":[153],"(v)":[155],"An":[156],"BLASTX":[158],"service":[159],"available":[160],"users":[162],"query":[164],"their":[165],"against":[167],"proteins":[169],"dbCAN-PUL.":[171],"With":[172],"these":[173],"features,":[174],"will":[176],"important":[179],"repository":[180],"research,":[185],"complementing":[186],"our":[187],"web":[189],"servers":[190],"databases":[192],"(dbCAN2,":[193],"dbCAN-seq).":[194]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":24},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":34},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
