{"id":"https://openalex.org/W3028851061","doi":"https://doi.org/10.1093/nar/gkaa437","title":"CReSCENT: CanceR Single Cell ExpressioN Toolkit","display_name":"CReSCENT: CanceR Single Cell ExpressioN Toolkit","publication_year":2020,"publication_date":"2020-05-13","ids":{"openalex":"https://openalex.org/W3028851061","doi":"https://doi.org/10.1093/nar/gkaa437","mag":"3028851061","pmid":"https://pubmed.ncbi.nlm.nih.gov/32479601"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa437","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa437","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W372/33433021/gkaa437.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/W1/W372/33433021/gkaa437.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069975866","display_name":"Suluxan Mohanraj","orcid":null},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Suluxan Mohanraj","raw_affiliation_strings":["Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada"],"affiliations":[{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016417806","display_name":"J. Javier D\u00edaz-Mej\u00eda","orcid":"https://orcid.org/0000-0003-2475-3077"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"J Javier D\u00edaz-Mej\u00eda","raw_affiliation_strings":["Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada"],"affiliations":[{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087425935","display_name":"Martin D. Pham","orcid":null},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Martin D Pham","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040080237","display_name":"Hillary Elrick","orcid":"https://orcid.org/0000-0001-6178-1670"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Hillary Elrick","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072844274","display_name":"Mia Husi\u0107","orcid":"https://orcid.org/0000-0001-7553-825X"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mia Husi\u0107","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047014942","display_name":"Shaikh Rashid","orcid":null},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Shaikh Rashid","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064240230","display_name":"Ping Luo","orcid":"https://orcid.org/0000-0002-0039-747X"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ping Luo","raw_affiliation_strings":["Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada"],"affiliations":[{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053396700","display_name":"Prabnur Bal","orcid":null},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Prabnur Bal","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101979934","display_name":"Kevin GuoKai Lu","orcid":"https://orcid.org/0009-0007-5151-9645"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kevin Lu","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087299161","display_name":"Samarth Patel","orcid":"https://orcid.org/0000-0003-1531-6959"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Samarth Patel","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000850077","display_name":"Alaina Mahalanabis","orcid":null},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alaina Mahalanabis","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059850753","display_name":"Alaine Naidas","orcid":null},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alaine Naidas","raw_affiliation_strings":["University of Western Ontario, London, ON N6A 3K7, Canada"],"affiliations":[{"raw_affiliation_string":"University of Western Ontario, London, ON N6A 3K7, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056562596","display_name":"Erik Christensen","orcid":"https://orcid.org/0000-0003-1754-0778"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Erik Christensen","raw_affiliation_strings":["University of Western Ontario, London, ON N6A 3K7, Canada"],"affiliations":[{"raw_affiliation_string":"University of Western Ontario, London, ON N6A 3K7, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038825951","display_name":"Danielle Croucher","orcid":"https://orcid.org/0000-0003-1052-7853"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Danielle Croucher","raw_affiliation_strings":["Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada"],"affiliations":[{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005449643","display_name":"Laura M. Richards","orcid":"https://orcid.org/0000-0003-3414-7628"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Laura M Richards","raw_affiliation_strings":["Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada"],"affiliations":[{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082317014","display_name":"Parisa Shooshtari","orcid":"https://orcid.org/0000-0003-2273-1034"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]},{"id":"https://openalex.org/I4210136254","display_name":"Children\u2019s Health Research Institute","ror":"https://ror.org/038pa9k74","country_code":"CA","type":"funder","lineage":["https://openalex.org/I2800925808","https://openalex.org/I4210136254","https://openalex.org/I4406742388"]},{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Parisa Shooshtari","raw_affiliation_strings":["Children's Health Research Institute, London, ON N6C 2R5, Canada","Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada","University of Western Ontario, London, ON N6A 3K7, Canada"],"affiliations":[{"raw_affiliation_string":"Children's Health Research Institute, London, ON N6C 2R5, Canada","institution_ids":["https://openalex.org/I4210136254"]},{"raw_affiliation_string":"Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"University of Western Ontario, London, ON N6A 3K7, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012113499","display_name":"Michael Brudno","orcid":"https://orcid.org/0000-0001-7947-2243"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]},{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Michael Brudno","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada","Department of Computer Science, University of Toronto, Toronto, ON M5S 3K1, Canada","Techna Institute, University Health Network, Toronto, ON M5G 0A3, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada","institution_ids":["https://openalex.org/I2801317318"]},{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Toronto, ON M5S 3K1, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Techna Institute, University Health Network, Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069859137","display_name":"Arun Ramani","orcid":"https://orcid.org/0000-0002-8162-8523"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Arun K Ramani","raw_affiliation_strings":["Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Computational Medicine, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072207500","display_name":"Trevor J. Pugh","orcid":"https://orcid.org/0000-0002-8073-5888"},"institutions":[{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Trevor J Pugh","raw_affiliation_strings":["Department of Medical Biophysics, University of Toronto, Toronto, ON M5S 3K1, Canada","Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada","Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto, Toronto, ON M5S 3K1, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 0A3, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":19,"corresponding_author_ids":["https://openalex.org/A5012113499","https://openalex.org/A5069859137","https://openalex.org/A5072207500"],"corresponding_institution_ids":["https://openalex.org/I112260969","https://openalex.org/I1325899441","https://openalex.org/I185261750","https://openalex.org/I2801317318","https://openalex.org/I2802654988"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.657,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.83975977,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"48","issue":"W1","first_page":"W372","last_page":"W379"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9607999920845032,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9391000270843506,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9422279596328735},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5335776209831238},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5185288190841675},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4815559685230255},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4579836428165436},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3354548215866089},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0897337794303894},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.08314183354377747}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9422279596328735},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5335776209831238},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5185288190841675},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4815559685230255},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4579836428165436},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3354548215866089},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0897337794303894},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.08314183354377747}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkaa437","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa437","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W372/33433021/gkaa437.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:32479601","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32479601","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7319570","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7319570","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa437","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa437","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W372/33433021/gkaa437.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6299999952316284,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G7373116644","display_name":null,"funder_award_id":"OGI-167","funder_id":"https://openalex.org/F4320319905","funder_display_name":"Ontario Genomics Institute"}],"funders":[{"id":"https://openalex.org/F4320308295","display_name":"Leukemia and Lymphoma Society","ror":"https://ror.org/04m0xav37"},{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320311559","display_name":"Princess Margaret Cancer Foundation","ror":"https://ror.org/00ctsa544"},{"id":"https://openalex.org/F4320313290","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54"},{"id":"https://openalex.org/F4320314024","display_name":"Ontario Genomics","ror":null},{"id":"https://openalex.org/F4320319880","display_name":"Government of Canada","ror":"https://ror.org/010q4q527"},{"id":"https://openalex.org/F4320319905","display_name":"Ontario Genomics Institute","ror":"https://ror.org/00c68jz96"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3028851061.pdf","grobid_xml":"https://content.openalex.org/works/W3028851061.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1979566015","https://openalex.org/W1980693461","https://openalex.org/W1988391018","https://openalex.org/W2286142055","https://openalex.org/W2780517934","https://openalex.org/W2783929588","https://openalex.org/W2794480084","https://openalex.org/W2884197618","https://openalex.org/W2885781875","https://openalex.org/W2889795168","https://openalex.org/W2917919349","https://openalex.org/W2951506174","https://openalex.org/W2980897730","https://openalex.org/W2989807288","https://openalex.org/W2997280954","https://openalex.org/W4233637541","https://openalex.org/W4243074797","https://openalex.org/W4251287806","https://openalex.org/W4256385088"],"related_works":["https://openalex.org/W2392243736","https://openalex.org/W86652014","https://openalex.org/W2186113122","https://openalex.org/W1523310174","https://openalex.org/W2531913951","https://openalex.org/W2328518092","https://openalex.org/W3101249758","https://openalex.org/W2382079200","https://openalex.org/W2374091470","https://openalex.org/W1902660783"],"abstract_inverted_index":{"CReSCENT:":[0],"CanceR":[1],"Single":[2],"Cell":[3],"ExpressioN":[4],"Toolkit":[5],"(https://crescent.cloud),":[6],"is":[7],"an":[8],"intuitive":[9],"and":[10,44,51,62,72,79,94],"scalable":[11],"web":[12],"portal":[13],"incorporating":[14],"a":[15],"containerized":[16],"pipeline":[17],"execution":[18],"engine":[19],"for":[20,32,54,81,92],"standardized":[21],"analysis":[22,39,49,93],"of":[23],"single-cell":[24],"RNA":[25],"sequencing":[26],"(scRNA-seq)":[27],"data.":[28],"While":[29],"scRNA-seq":[30,90],"data":[31,60,91],"tumour":[33],"specimens":[34],"are":[35,66,73],"readily":[36],"generated,":[37],"subsequent":[38],"requires":[40],"high-performance":[41],"computing":[42],"infrastructure":[43],"user":[45],"expertise":[46],"to":[47,68,75],"build":[48],"pipelines":[50,64],"tailor":[52],"interpretation":[53],"cancer":[55],"biology.":[56],"CReSCENT":[57],"uses":[58],"public":[59],"sets":[61],"preconfigured":[63],"that":[65],"accessible":[67],"computational":[69],"biology":[70],"non-experts":[71],"user-editable":[74],"allow":[76],"optimization,":[77],"comparison,":[78],"reanalysis":[80],"specific":[82],"experiments.":[83],"Users":[84],"can":[85,96],"also":[86],"upload":[87],"their":[88],"own":[89],"results":[95],"be":[97],"kept":[98],"private":[99],"or":[100],"shared":[101],"with":[102],"other":[103],"users.":[104]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
