{"id":"https://openalex.org/W3028636673","doi":"https://doi.org/10.1093/nar/gkaa408","title":"PseudoChecker: an integrated online platform for gene inactivation inference","display_name":"PseudoChecker: an integrated online platform for gene inactivation inference","publication_year":2020,"publication_date":"2020-05-06","ids":{"openalex":"https://openalex.org/W3028636673","doi":"https://doi.org/10.1093/nar/gkaa408","mag":"3028636673","pmid":"https://pubmed.ncbi.nlm.nih.gov/32449938"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa408","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa408","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W321/33433377/gkaa408.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/W1/W321/33433377/gkaa408.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061505928","display_name":"Lu\u00eds Q. Alves","orcid":"https://orcid.org/0000-0002-4119-2462"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Lu\u00eds Q Alves","raw_affiliation_strings":["CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, U. Porto-University of Porto, Matosinhos, 4450-208, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, U. Porto-University of Porto, Matosinhos, 4450-208, Portugal","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011934913","display_name":"Raquel Ruivo","orcid":"https://orcid.org/0000-0003-2412-8730"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Raquel Ruivo","raw_affiliation_strings":["CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, U. Porto-University of Porto, Matosinhos, 4450-208, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, U. Porto-University of Porto, Matosinhos, 4450-208, Portugal","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030231999","display_name":"Miguel M. Fonseca","orcid":"https://orcid.org/0000-0003-4598-670X"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Miguel M Fonseca","raw_affiliation_strings":["CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, U. Porto-University of Porto, Matosinhos, 4450-208, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, U. Porto-University of Porto, Matosinhos, 4450-208, Portugal","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033535807","display_name":"M\u00f3nica Lopes\u2010Marques","orcid":"https://orcid.org/0000-0002-8597-4730"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"M\u00f3nica Lopes-Marques","raw_affiliation_strings":["CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, U. Porto-University of Porto, Matosinhos, 4450-208, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, U. Porto-University of Porto, Matosinhos, 4450-208, Portugal","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114374332","display_name":"Pedro Ribeiro","orcid":"https://orcid.org/0000-0002-5768-1383"},"institutions":[{"id":"https://openalex.org/I4210166615","display_name":"INESC TEC","ror":"https://ror.org/05fa8ka61","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125590","https://openalex.org/I4210166615"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Pedro Ribeiro","raw_affiliation_strings":["CRACS\u00a0& INESC-TEC Department of Computer Science, FCUP, Porto, 4169-007, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CRACS\u00a0& INESC-TEC Department of Computer Science, FCUP, Porto, 4169-007, Portugal","institution_ids":["https://openalex.org/I4210166615"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027950362","display_name":"L. Filipe C. Castro","orcid":"https://orcid.org/0000-0001-7697-386X"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"L\u00a0Filipe\u00a0C Castro","raw_affiliation_strings":["CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, U. Porto-University of Porto, Matosinhos, 4450-208, Portugal","Department of Biology, FCUP, Porto, 4169-007, Portugal"],"raw_orcid":"https://orcid.org/0000-0001-7697-386X","affiliations":[{"raw_affiliation_string":"CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, U. Porto-University of Porto, Matosinhos, 4450-208, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"Department of Biology, FCUP, Porto, 4169-007, Portugal","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5011934913","https://openalex.org/A5027950362","https://openalex.org/A5061505928"],"corresponding_institution_ids":["https://openalex.org/I182534213"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.9764,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.73957408,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"48","issue":"W1","first_page":"W321","last_page":"W331"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8198450207710266},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6199987530708313},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6061257719993591},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6019091606140137},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5897934436798096},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5573639869689941},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.5447360873222351},{"id":"https://openalex.org/keywords/login","display_name":"Login","score":0.48742249608039856},{"id":"https://openalex.org/keywords/novelty","display_name":"Novelty","score":0.44115546345710754},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42695099115371704},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.28764063119888306},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18476706743240356}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8198450207710266},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6199987530708313},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6061257719993591},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6019091606140137},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5897934436798096},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5573639869689941},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.5447360873222351},{"id":"https://openalex.org/C113324615","wikidata":"https://www.wikidata.org/wiki/Q472302","display_name":"Login","level":2,"score":0.48742249608039856},{"id":"https://openalex.org/C2778738651","wikidata":"https://www.wikidata.org/wiki/Q16546687","display_name":"Novelty","level":2,"score":0.44115546345710754},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42695099115371704},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.28764063119888306},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18476706743240356},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C27206212","wikidata":"https://www.wikidata.org/wiki/Q34178","display_name":"Theology","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011544","descriptor_name":"Pseudogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011544","descriptor_name":"Pseudogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011544","descriptor_name":"Pseudogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011544","descriptor_name":"Pseudogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkaa408","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa408","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W321/33433377/gkaa408.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:32449938","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32449938","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7319564","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7319564","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa408","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa408","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W321/33433377/gkaa408.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G1167214205","display_name":null,"funder_award_id":"COMPETE","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G1578237752","display_name":null,"funder_award_id":"COMPETE","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3491971210","display_name":null,"funder_award_id":"COMPETE 2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G4176497637","display_name":null,"funder_award_id":"COMPETE 2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5454278309","display_name":null,"funder_award_id":"/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3028636673.pdf","grobid_xml":"https://content.openalex.org/works/W3028636673.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1921457844","https://openalex.org/W1966803394","https://openalex.org/W1971037720","https://openalex.org/W1976049389","https://openalex.org/W2012034410","https://openalex.org/W2014323284","https://openalex.org/W2066036014","https://openalex.org/W2074231493","https://openalex.org/W2079671119","https://openalex.org/W2116072809","https://openalex.org/W2118397457","https://openalex.org/W2119837484","https://openalex.org/W2127143129","https://openalex.org/W2132283613","https://openalex.org/W2144882930","https://openalex.org/W2303643032","https://openalex.org/W2340497515","https://openalex.org/W2750313261","https://openalex.org/W2770668845","https://openalex.org/W2788008213","https://openalex.org/W2790517927","https://openalex.org/W2796122960","https://openalex.org/W2804874224","https://openalex.org/W2809740166","https://openalex.org/W2842239020","https://openalex.org/W2885999244","https://openalex.org/W2888308804","https://openalex.org/W2895437620","https://openalex.org/W2898863922","https://openalex.org/W2905061751","https://openalex.org/W2911786507","https://openalex.org/W2914427277","https://openalex.org/W2925139335","https://openalex.org/W2942860978","https://openalex.org/W2944798675","https://openalex.org/W2952048439","https://openalex.org/W2963999114","https://openalex.org/W2975015920","https://openalex.org/W2979668744","https://openalex.org/W2982123578","https://openalex.org/W3006691394","https://openalex.org/W4242105792","https://openalex.org/W6746653250"],"related_works":["https://openalex.org/W2036948647","https://openalex.org/W1565527690","https://openalex.org/W1493660383","https://openalex.org/W2759519215","https://openalex.org/W2353729507","https://openalex.org/W4318240630","https://openalex.org/W2350466590","https://openalex.org/W1542620732","https://openalex.org/W3031625301","https://openalex.org/W4386771068"],"abstract_inverted_index":{"The":[0],"rapid":[1],"expansion":[2],"of":[3,29,36,43,103,122,127,154,159],"high-quality":[4],"genome":[5],"assemblies,":[6],"exemplified":[7],"by":[8],"ongoing":[9],"initiatives":[10],"such":[11,52],"as":[12,40],"the":[13,27,33,68,78,104,142],"Genome-10K":[14],"and":[15,58,94,116,137,157],"i5k,":[16],"demands":[17],"novel":[18,96],"automated":[19,60],"methods":[20],"to":[21,50,132,150],"approach":[22,61,85],"comparative":[23,83],"genomics.":[24],"Of":[25],"these,":[26],"study":[28],"inactivating":[30],"mutations":[31],"in":[32,135],"coding":[34,106],"region":[35],"genes,":[37,161],"or":[38],"pseudogenization,":[39],"a":[41,55,89,95,109,119],"source":[42],"evolutionary":[44],"novelty":[45],"is":[46,62,166],"mostly":[47],"overlooked.":[48],"Thus,":[49],"address":[51],"evolutionary/genomic":[53],"events,":[54],"systematic,":[56],"accurate":[57],"computationally":[59],"required.":[63],"Here,":[64],"we":[65],"present":[66],"PseudoChecker,":[67],"first":[69],"integrated":[70],"online":[71,111],"platform":[72],"for":[73,99],"gene":[74,105],"inactivation":[75],"inference.":[76],"Unlike":[77],"few":[79],"existing":[80],"methods,":[81],"our":[82],"genomics-based":[84],"displays":[86],"full":[87],"automation,":[88],"built-in":[90],"graphical":[91],"user":[92],"interface":[93],"index,":[97],"PseudoIndex,":[98],"an":[100],"empirical":[101],"evaluation":[102],"status.":[107],"As":[108],"multi-platform":[110],"service,":[112],"PseudoChecker":[113,147,165],"simplifies":[114],"access":[115],"usability,":[117],"allowing":[118],"fast":[120],"identification":[121],"disruptive":[123],"mutations.":[124],"An":[125],"analysis":[126],"30":[128,138],"genes":[129,140],"previously":[130],"reported":[131],"be":[133],"eroded":[134],"mammals,":[136],"viable":[139],"from":[141],"same":[143],"lineages,":[144],"demonstrated":[145],"that":[146],"was":[148],"able":[149],"correctly":[151],"infer":[152],"97%":[153],"loss":[155],"events":[156],"95%":[158],"functional":[160],"confirming":[162],"its":[163],"reliability.":[164],"freely":[167],"available,":[168],"without":[169],"login":[170],"required,":[171],"at":[172],"http://pseudochecker.ciimar.up.pt.":[173]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
