{"id":"https://openalex.org/W3034024909","doi":"https://doi.org/10.1093/nar/gkaa396","title":"RNAProbe: a web server for normalization and analysis of RNA structure probing data","display_name":"RNAProbe: a web server for normalization and analysis of RNA structure probing data","publication_year":2020,"publication_date":"2020-06-05","ids":{"openalex":"https://openalex.org/W3034024909","doi":"https://doi.org/10.1093/nar/gkaa396","mag":"3034024909","pmid":"https://pubmed.ncbi.nlm.nih.gov/32504492"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa396","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa396","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkaa396","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007830149","display_name":"Tomasz Wirecki","orcid":"https://orcid.org/0000-0001-6539-3640"},"institutions":[{"id":"https://openalex.org/I4210120699","display_name":"International Institute of Molecular and Cell Biology","ror":"https://ror.org/01y3dkx74","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210120699"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Tomasz K Wirecki","raw_affiliation_strings":["Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland"],"raw_orcid":"https://orcid.org/0000-0001-6539-3640","affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland","institution_ids":["https://openalex.org/I4210120699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059549548","display_name":"Katarzyna Merdas","orcid":"https://orcid.org/0000-0002-0205-1608"},"institutions":[{"id":"https://openalex.org/I4210120699","display_name":"International Institute of Molecular and Cell Biology","ror":"https://ror.org/01y3dkx74","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210120699"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Katarzyna Merdas","raw_affiliation_strings":["Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland"],"raw_orcid":"https://orcid.org/0000-0002-0205-1608","affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland","institution_ids":["https://openalex.org/I4210120699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024748867","display_name":"Agata Bernat","orcid":"https://orcid.org/0000-0002-5555-9464"},"institutions":[{"id":"https://openalex.org/I4210120699","display_name":"International Institute of Molecular and Cell Biology","ror":"https://ror.org/01y3dkx74","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210120699"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Agata Bernat","raw_affiliation_strings":["Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland"],"raw_orcid":"https://orcid.org/0000-0002-5555-9464","affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland","institution_ids":["https://openalex.org/I4210120699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062947068","display_name":"M. Boniecki","orcid":"https://orcid.org/0000-0002-8010-0751"},"institutions":[{"id":"https://openalex.org/I4210120699","display_name":"International Institute of Molecular and Cell Biology","ror":"https://ror.org/01y3dkx74","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210120699"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Micha\u0142 J Boniecki","raw_affiliation_strings":["Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland"],"raw_orcid":"https://orcid.org/0000-0002-8010-0751","affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland","institution_ids":["https://openalex.org/I4210120699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003280938","display_name":"Janusz M. Bujnicki","orcid":"https://orcid.org/0000-0002-6633-165X"},"institutions":[{"id":"https://openalex.org/I4210120699","display_name":"International Institute of Molecular and Cell Biology","ror":"https://ror.org/01y3dkx74","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210120699"]},{"id":"https://openalex.org/I59411706","display_name":"Adam Mickiewicz University in Pozna\u0144","ror":"https://ror.org/04g6bbq64","country_code":"PL","type":"education","lineage":["https://openalex.org/I59411706"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Janusz\u00a0M Bujnicki","raw_affiliation_strings":["Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, ul. Umultowska 89, PL-61-614 Poznan, Poland","Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland"],"raw_orcid":"https://orcid.org/0000-0002-6633-165X","affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, ul. Umultowska 89, PL-61-614 Poznan, Poland","institution_ids":["https://openalex.org/I59411706"]},{"raw_affiliation_string":"Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland","institution_ids":["https://openalex.org/I4210120699"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021047504","display_name":"Filip Stefaniak","orcid":"https://orcid.org/0000-0001-5758-9416"},"institutions":[{"id":"https://openalex.org/I4210120699","display_name":"International Institute of Molecular and Cell Biology","ror":"https://ror.org/01y3dkx74","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210120699"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Filip Stefaniak","raw_affiliation_strings":["Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland"],"raw_orcid":"https://orcid.org/0000-0001-5758-9416","affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw, ul. Ks. Trojdena 4, PL-02-109 Warsaw, Poland","institution_ids":["https://openalex.org/I4210120699"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5003280938","https://openalex.org/A5007830149"],"corresponding_institution_ids":["https://openalex.org/I4210120699","https://openalex.org/I59411706"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.9169,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.73013819,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"48","issue":"W1","first_page":"W292","last_page":"W299"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.7675502300262451},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6630153059959412},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6621919274330139},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.5669071078300476},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5639863610267639},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5542612671852112},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5256061553955078},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5227560997009277},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4898352324962616},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4802592098712921},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4493664503097534},{"id":"https://openalex.org/keywords/database-normalization","display_name":"Database normalization","score":0.42829596996307373},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36269474029541016},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2720205783843994},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.22507312893867493},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.20831525325775146},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.16142317652702332},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.11890226602554321},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11295938491821289}],"concepts":[{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.7675502300262451},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6630153059959412},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6621919274330139},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.5669071078300476},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5639863610267639},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5542612671852112},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5256061553955078},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5227560997009277},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4898352324962616},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4802592098712921},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4493664503097534},{"id":"https://openalex.org/C162984825","wikidata":"https://www.wikidata.org/wiki/Q339072","display_name":"Database normalization","level":3,"score":0.42829596996307373},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36269474029541016},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2720205783843994},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.22507312893867493},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.20831525325775146},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.16142317652702332},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.11890226602554321},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11295938491821289},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058928","descriptor_name":"Riboswitch","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058928","descriptor_name":"Riboswitch","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058928","descriptor_name":"Riboswitch","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkaa396","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa396","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:32504492","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32504492","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7319577","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7319577","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa396","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa396","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1043802148","display_name":null,"funder_award_id":"2018/02/X/NZ1/01468","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"},{"id":"https://openalex.org/G2200593622","display_name":null,"funder_award_id":"2016/23/B/ST6/03433","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"},{"id":"https://openalex.org/G281309384","display_name":null,"funder_award_id":"2017/25/B/NZ2/01294","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"},{"id":"https://openalex.org/G8618116964","display_name":null,"funder_award_id":"TEAM/2016-3/18","funder_id":"https://openalex.org/F4320321042","funder_display_name":"Fundacja na rzecz Nauki Polskiej"}],"funders":[{"id":"https://openalex.org/F4320321042","display_name":"Fundacja na rzecz Nauki Polskiej","ror":"https://ror.org/048zd9m77"},{"id":"https://openalex.org/F4320322511","display_name":"Narodowe Centrum Nauki","ror":"https://ror.org/03ha2q922"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W1486369891","https://openalex.org/W1512118256","https://openalex.org/W1565819194","https://openalex.org/W1767538696","https://openalex.org/W1940141977","https://openalex.org/W1972533328","https://openalex.org/W1979431512","https://openalex.org/W2009698138","https://openalex.org/W2011703027","https://openalex.org/W2031512086","https://openalex.org/W2036412199","https://openalex.org/W2065841577","https://openalex.org/W2067810191","https://openalex.org/W2071883352","https://openalex.org/W2086561953","https://openalex.org/W2097971843","https://openalex.org/W2098571862","https://openalex.org/W2102017611","https://openalex.org/W2114702358","https://openalex.org/W2118102525","https://openalex.org/W2120974004","https://openalex.org/W2129275368","https://openalex.org/W2129726167","https://openalex.org/W2134489577","https://openalex.org/W2142038007","https://openalex.org/W2143407915","https://openalex.org/W2147362276","https://openalex.org/W2148725278","https://openalex.org/W2264831250","https://openalex.org/W2340902485","https://openalex.org/W2347162849","https://openalex.org/W2395625908","https://openalex.org/W2416840505","https://openalex.org/W2522335941","https://openalex.org/W2550434426","https://openalex.org/W2552197008","https://openalex.org/W2805982776","https://openalex.org/W2951366467","https://openalex.org/W2954102902","https://openalex.org/W3022519641","https://openalex.org/W6637873957"],"related_works":["https://openalex.org/W4241705247","https://openalex.org/W2145362441","https://openalex.org/W2101622345","https://openalex.org/W2582603276","https://openalex.org/W3134304369","https://openalex.org/W2904308980","https://openalex.org/W4386281023","https://openalex.org/W4312138714","https://openalex.org/W2113286112","https://openalex.org/W2012771827"],"abstract_inverted_index":{"RNA":[0,15,28],"molecules":[1,16],"play":[2],"key":[3],"roles":[4],"in":[5,163,187],"all":[6],"living":[7],"cells.":[8],"Knowledge":[9],"of":[10,14,22,25,37,73,78,102,166,179],"the":[11,23,35,43,74,79,103,112,161,164],"structural":[12],"characteristics":[13],"allows":[17,31],"for":[18,81,173],"a":[19,93,132,140,167],"better":[20],"understanding":[21],"mechanisms":[24],"their":[26],"action.":[27],"chemical":[29,40,122],"probing":[30,109,123],"us":[32],"to":[33,39,49],"study":[34],"susceptibility":[36],"nucleotides":[38],"modification,":[41],"and":[42,76,100,107,126,149,156],"information":[44],"obtained":[45],"can":[46,57,170],"be":[47,58,171],"used":[48,172],"guide":[50],"secondary":[51,145],"structure":[52,146,154],"prediction.":[53],"These":[54],"experimental":[55],"results":[56,110,162],"analyzed":[59],"using":[60],"various":[61],"computational":[62],"tools,":[63],"which,":[64],"however,":[65],"requires":[66],"additional,":[67],"tedious":[68,128],"steps":[69],"(e.g.,":[70],"further":[71],"normalization":[72,137],"reactivities":[75,183],"visualization":[77,101],"results),":[80],"which":[82,169],"there":[83],"are":[84,184],"no":[85],"fully":[86],"automated":[87],"methods.":[88],"Here,":[89],"we":[90],"introduce":[91],"RNAProbe,":[92],"web":[94],"server":[95],"that":[96],"facilitates":[97],"normalization,":[98],"analysis,":[99],"low-pass":[104],"SHAPE,":[105],"DMS":[106],"CMCT":[108],"with":[111,153,181,192],"modification":[113],"sites":[114],"detected":[115],"by":[116],"capillary":[117],"electrophoresis.":[118],"RNAProbe":[119,135,195],"automatically":[120],"analyzes":[121],"output":[124],"data":[125],"turns":[127],"manual":[129],"work":[130],"into":[131],"one-minute":[133],"assignment.":[134],"performs":[136],"based":[138],"on":[139],"well-established":[141],"protocol,":[142],"utilizes":[143],"recognized":[144],"prediction":[147],"methods,":[148],"generates":[150],"high-quality":[151],"images":[152],"representations":[155],"reactivity":[157],"heatmaps.":[158],"It":[159],"summarizes":[160],"form":[165],"spreadsheet,":[168],"comparative":[174],"analyses":[175],"between":[176],"experiments.":[177],"Results":[178],"predictions":[180],"normalized":[182],"also":[185],"collected":[186],"text":[188],"files,":[189],"providing":[190],"interoperability":[191],"bioinformatics":[193],"workflows.":[194],"is":[196],"available":[197],"at":[198],"https://rnaprobe.genesilico.pl.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3}],"updated_date":"2026-06-02T09:04:35.204637","created_date":"2025-10-10T00:00:00"}
