{"id":"https://openalex.org/W3023862871","doi":"https://doi.org/10.1093/nar/gkaa309","title":"miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems","display_name":"miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems","publication_year":2020,"publication_date":"2020-04-22","ids":{"openalex":"https://openalex.org/W3023862871","doi":"https://doi.org/10.1093/nar/gkaa309","mag":"3023862871","pmid":"https://pubmed.ncbi.nlm.nih.gov/32374865"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa309","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa309","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W521/33433413/gkaa309.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/W1/W521/33433413/gkaa309.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084504324","display_name":"Fabian Kern","orcid":"https://orcid.org/0000-0002-8223-3750"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabian Kern","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany"],"raw_orcid":"https://orcid.org/0000-0002-8223-3750","affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075631508","display_name":"Tobias Fehlmann","orcid":"https://orcid.org/0000-0003-1967-2918"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias Fehlmann","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany"],"raw_orcid":"https://orcid.org/0000-0003-1967-2918","affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058152494","display_name":"Jeffrey Solomon","orcid":"https://orcid.org/0000-0002-8948-0682"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jeffrey Solomon","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012970973","display_name":"Louisa Schwed","orcid":null},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Louisa Schwed","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055257920","display_name":"Nadja Grammes","orcid":"https://orcid.org/0000-0002-4845-2757"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nadja Grammes","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany"],"raw_orcid":"https://orcid.org/0000-0002-4845-2757","affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015677497","display_name":"Christina Backes","orcid":"https://orcid.org/0000-0001-9330-9290"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christina Backes","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9330-9290","affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031336237","display_name":"Kendall Van Keuren\u2010Jensen","orcid":"https://orcid.org/0000-0001-8833-6323"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kendall Van\u00a0Keuren-Jensen","raw_affiliation_strings":["Neurogenomics Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurogenomics Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA","institution_ids":["https://openalex.org/I1284308235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074460206","display_name":"David W. Craig","orcid":"https://orcid.org/0000-0003-2040-1955"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Wesley Craig","raw_affiliation_strings":["Institute of Translational Genomics, University of Southern California, Los Angeles, CA 90033, USA"],"raw_orcid":"https://orcid.org/0000-0003-2040-1955","affiliations":[{"raw_affiliation_string":"Institute of Translational Genomics, University of Southern California, Los Angeles, CA 90033, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054514348","display_name":"Eckart Meese","orcid":"https://orcid.org/0000-0001-7569-819X"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Eckart Meese","raw_affiliation_strings":["Department of Human Genetics, Saarland University, 66421 Homburg, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7569-819X","affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Saarland University, 66421 Homburg, Germany","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020280119","display_name":"Andreas Keller","orcid":"https://orcid.org/0000-0002-5361-0895"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Andreas Keller","raw_affiliation_strings":["Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA 94304, USA","School of Medicine Office, Stanford University, Stanford, CA 94305, USA"],"raw_orcid":"https://orcid.org/0000-0002-5361-0895","affiliations":[{"raw_affiliation_string":"Chair for Clinical Bioinformatics, Saarland University, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I91712215"]},{"raw_affiliation_string":"Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA 94304, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"School of Medicine Office, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5020280119"],"corresponding_institution_ids":["https://openalex.org/I91712215","https://openalex.org/I97018004"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":12.1735,"has_fulltext":true,"cited_by_count":198,"citation_normalized_percentile":{"value":0.99243939,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"48","issue":"W1","first_page":"W521","last_page":"W528"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10876","display_name":"Fault Detection and Control Systems","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/2207","display_name":"Control and Systems Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10564","display_name":"Wastewater Treatment and Nitrogen Removal","score":0.9253000020980835,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9448385238647461},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7279954552650452},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5734397768974304},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.5156360864639282},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3380395770072937},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.23078855872154236},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1478978395462036},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.12695810198783875}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9448385238647461},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7279954552650452},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5734397768974304},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.5156360864639282},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3380395770072937},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.23078855872154236},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1478978395462036},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.12695810198783875}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002292","descriptor_name":"Carcinoma, Renal Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002292","descriptor_name":"Carcinoma, Renal Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002292","descriptor_name":"Carcinoma, Renal Cell","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007680","descriptor_name":"Kidney Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018450","descriptor_name":"Disease Progression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018450","descriptor_name":"Disease Progression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018450","descriptor_name":"Disease Progression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkaa309","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa309","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W521/33433413/gkaa309.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:32374865","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32374865","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7319446","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7319446","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa309","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa309","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W521/33433413/gkaa309.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.41999998688697815,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G3453357701","display_name":null,"funder_award_id":"14446","funder_id":"https://openalex.org/F4320306136","funder_display_name":"Michael J. Fox Foundation for Parkinson's Research"}],"funders":[{"id":"https://openalex.org/F4320306136","display_name":"Michael J. Fox Foundation for Parkinson's Research","ror":"https://ror.org/03arq3225"},{"id":"https://openalex.org/F4320323322","display_name":"Universit\u00e4t des Saarlandes","ror":"https://ror.org/01jdpyv68"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3023862871.pdf","grobid_xml":"https://content.openalex.org/works/W3023862871.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W575485810","https://openalex.org/W1970285719","https://openalex.org/W2049344510","https://openalex.org/W2103209361","https://openalex.org/W2106210472","https://openalex.org/W2110417468","https://openalex.org/W2130410032","https://openalex.org/W2137734450","https://openalex.org/W2158135353","https://openalex.org/W2174734928","https://openalex.org/W2242206668","https://openalex.org/W2288482887","https://openalex.org/W2339466004","https://openalex.org/W2341117915","https://openalex.org/W2343700030","https://openalex.org/W2470277042","https://openalex.org/W2508362099","https://openalex.org/W2524586970","https://openalex.org/W2588757737","https://openalex.org/W2605897695","https://openalex.org/W2748577514","https://openalex.org/W2757262038","https://openalex.org/W2758610627","https://openalex.org/W2765372324","https://openalex.org/W2778968255","https://openalex.org/W2805684402","https://openalex.org/W2897805491","https://openalex.org/W2898440040","https://openalex.org/W2898850833","https://openalex.org/W2899510892","https://openalex.org/W2899798803","https://openalex.org/W2919470997","https://openalex.org/W2950595506","https://openalex.org/W2951144892","https://openalex.org/W2952528394","https://openalex.org/W2963020007","https://openalex.org/W2971928433","https://openalex.org/W2980748692","https://openalex.org/W2984302209","https://openalex.org/W2987567173","https://openalex.org/W2990433057","https://openalex.org/W2993148047","https://openalex.org/W2993221490","https://openalex.org/W2993429139","https://openalex.org/W2997673681","https://openalex.org/W3003257820","https://openalex.org/W3010196695","https://openalex.org/W3103145119","https://openalex.org/W4211064852","https://openalex.org/W4246271082","https://openalex.org/W4255156463","https://openalex.org/W6725105739","https://openalex.org/W6745121010","https://openalex.org/W6770259774","https://openalex.org/W6774647885","https://openalex.org/W6836575638"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"Gene":[0],"set":[1,83],"enrichment":[2,39,84],"analysis":[3,40,85],"has":[4],"become":[5],"one":[6],"of":[7,67,101,109,140],"the":[8,22,37,88,99,127,165,182],"most":[9],"frequently":[10,61],"used":[11],"applications":[12],"in":[13,69,121,143],"molecular":[14],"biology":[15],"research.":[16],"Originally":[17],"developed":[18],"for":[19,29,45,171,189],"gene":[20],"sets,":[21],"same":[23],"statistical":[24],"principles":[25],"are":[26,142],"now":[27],"available":[28],"all":[30],"omics":[31],"types.":[32],"In":[33,124],"2016,":[34],"we":[35,52,72],"published":[36],"miRNA":[38,57,82],"and":[41,48,130,156,185],"annotation":[42,116],"tool":[43,193],"(miEAA)":[44],"human":[46,172],"precursor":[47],"mature":[49],"miRNAs.":[50],"Here,":[51],"present":[53],"miEAA":[54,68,133],"2.0,":[55],"supporting":[56],"input":[58],"from":[59,181],"ten":[60],"investigated":[62],"organisms.":[63],"To":[64],"facilitate":[65],"inclusion":[66],"workflow":[70],"systems,":[71],"implemented":[73,112],"an":[74,107],"Application":[75],"Programming":[76],"Interface":[77],"(API).":[78],"Users":[79],"can":[80],"perform":[81],"using":[86],"either":[87],"web-interface,":[89],"a":[90,175,186],"dedicated":[91],"Python":[92],"package,":[93],"or":[94,119],"custom":[95],"remote":[96],"clients.":[97],"Moreover,":[98],"number":[100],"category":[102],"sets":[103],"was":[104],"raised":[105],"by":[106],"order":[108],"magnitude.":[110],"We":[111,163],"novel":[113,150],"categories":[114],"like":[115],"confidence":[117],"level":[118],"localisation":[120],"biological":[122],"compartments.":[123],"combination":[125],"with":[126,160,168],"miRBase":[128,141],"miRNA-version":[129],"miRNA-to-precursor":[131],"converters,":[132],"supports":[134],"research":[135],"settings":[136],"where":[137],"older":[138],"releases":[139],"use.":[144],"The":[145,192],"web":[146],"server":[147],"also":[148],"offers":[149],"comprehensive":[151],"visualizations":[152],"such":[153],"as":[154],"heatmaps":[155],"running":[157],"sum":[158],"curves":[159],"background":[161],"distributions.":[162],"demonstrate":[164],"new":[166],"features":[167],"case":[169],"studies":[170],"kidney":[173],"cancer,":[174],"biomarker":[176],"study":[177],"on":[178],"Parkinson's":[179],"disease":[180],"PPMI":[183],"cohort,":[184],"mouse":[187],"model":[188],"breast":[190],"cancer.":[191],"is":[194],"freely":[195],"accessible":[196],"at:":[197],"https://www.ccb.uni-saarland.de/mieaa2.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":32},{"year":2023,"cited_by_count":63},{"year":2022,"cited_by_count":36},{"year":2021,"cited_by_count":24},{"year":2020,"cited_by_count":13}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
