{"id":"https://openalex.org/W3020440546","doi":"https://doi.org/10.1093/nar/gkaa275","title":"MusiteDeep: a deep-learning based webserver for protein post-translational modification site prediction and visualization","display_name":"MusiteDeep: a deep-learning based webserver for protein post-translational modification site prediction and visualization","publication_year":2020,"publication_date":"2020-04-08","ids":{"openalex":"https://openalex.org/W3020440546","doi":"https://doi.org/10.1093/nar/gkaa275","mag":"3020440546","pmid":"https://pubmed.ncbi.nlm.nih.gov/32324217"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa275","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa275","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W140/33432850/gkaa275.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/W1/W140/33432850/gkaa275.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003943520","display_name":"Duolin Wang","orcid":"https://orcid.org/0000-0003-1649-460X"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Duolin Wang","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA","Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024811227","display_name":"Dongpeng Liu","orcid":"https://orcid.org/0000-0001-5587-7123"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dongpeng Liu","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003312415","display_name":"Jiakang Yuchi","orcid":null},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiakang Yuchi","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087149818","display_name":"Fei He","orcid":"https://orcid.org/0000-0002-3284-9506"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Fei He","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA","School of Information Science and Technology, Northeast Normal University, Changchun, Jilin 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Changchun, Jilin 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112452050","display_name":"Yuexu Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuexu Jiang","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA","Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074752020","display_name":"Siteng Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Siteng Cai","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100399446","display_name":"Jingyi Li","orcid":"https://orcid.org/0000-0003-1019-7030"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingyi Li","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Changchun, Jilin 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Changchun, Jilin 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082428303","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0002-4809-0514"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dong Xu","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA","Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA"],"raw_orcid":"https://orcid.org/0000-0002-4809-0514","affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA","institution_ids":["https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5082428303"],"corresponding_institution_ids":["https://openalex.org/I76835614"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":12.2957,"has_fulltext":true,"cited_by_count":317,"citation_normalized_percentile":{"value":0.99022905,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"48","issue":"W1","first_page":"W140","last_page":"W146"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.9659000039100647,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9581999778747559,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7628145813941956},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.714208722114563},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6826619505882263},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5648548007011414},{"id":"https://openalex.org/keywords/posttranslational-modification","display_name":"Posttranslational modification","score":0.5285417437553406},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.41699254512786865},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36088424921035767},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36043673753738403},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35049304366111755},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3489975929260254},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32482850551605225},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3217282295227051},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.24865084886550903},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21997880935668945}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7628145813941956},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.714208722114563},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6826619505882263},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5648548007011414},{"id":"https://openalex.org/C100631289","wikidata":"https://www.wikidata.org/wiki/Q898362","display_name":"Posttranslational modification","level":3,"score":0.5285417437553406},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.41699254512786865},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36088424921035767},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36043673753738403},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35049304366111755},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3489975929260254},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32482850551605225},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3217282295227051},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.24865084886550903},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21997880935668945},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkaa275","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa275","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W140/33432850/gkaa275.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:32324217","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32324217","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7319475","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7319475","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa275","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa275","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W140/33432850/gkaa275.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2568379775","display_name":null,"funder_award_id":"GM126985","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7585683335","display_name":null,"funder_award_id":"R35 GM126985","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7975266290","display_name":null,"funder_award_id":"R35-GM126985","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3020440546.pdf","grobid_xml":"https://content.openalex.org/works/W3020440546.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1975092906","https://openalex.org/W2026086206","https://openalex.org/W2044865804","https://openalex.org/W2069152576","https://openalex.org/W2088456241","https://openalex.org/W2103404876","https://openalex.org/W2107003257","https://openalex.org/W2124052876","https://openalex.org/W2152339342","https://openalex.org/W2158577092","https://openalex.org/W2160678789","https://openalex.org/W2167663587","https://openalex.org/W2417424288","https://openalex.org/W2472351724","https://openalex.org/W2541711215","https://openalex.org/W2563212203","https://openalex.org/W2588614855","https://openalex.org/W2612690371","https://openalex.org/W2742750032","https://openalex.org/W2749039461","https://openalex.org/W2791740716","https://openalex.org/W2805367049","https://openalex.org/W2806449887","https://openalex.org/W2888815520","https://openalex.org/W2890139776","https://openalex.org/W2891553018","https://openalex.org/W2898364362","https://openalex.org/W2899002988","https://openalex.org/W2900206619","https://openalex.org/W2903682118","https://openalex.org/W2906946803","https://openalex.org/W2919115771","https://openalex.org/W2963173418","https://openalex.org/W2967252838","https://openalex.org/W4213459840","https://openalex.org/W6631190155","https://openalex.org/W6749107692"],"related_works":["https://openalex.org/W2183842793","https://openalex.org/W4255676640","https://openalex.org/W2485259751","https://openalex.org/W4236216870","https://openalex.org/W4243876796","https://openalex.org/W2485273903","https://openalex.org/W2482041988","https://openalex.org/W2489685223","https://openalex.org/W2497349655","https://openalex.org/W2770888382"],"abstract_inverted_index":{"MusiteDeep":[0,171,183],"is":[1,60,173],"an":[2],"online":[3],"resource":[4],"providing":[5,104,152],"a":[6,35,39,149],"deep-learning":[7],"framework":[8,73,96],"for":[9,38,52,67,108,112,158,180],"protein":[10,22,138],"post-translational":[11],"modification":[12],"(PTM)":[13],"site":[14,84],"prediction":[15,37,105],"and":[16,26,77,103,106,137],"visualization.":[17],"The":[18,58,72,170,177],"predictor":[19],"only":[20],"uses":[21],"sequences":[23,54],"as":[24],"input":[25],"no":[27],"complex":[28],"features":[29],"are":[30,184],"needed,":[31],"which":[32],"results":[33],"in":[34,82,130],"real-time":[36],"large":[40],"number":[41],"of":[42,133],"proteins.":[43],"It":[44],"takes":[45],"less":[46],"than":[47],"three":[48,168],"minutes":[49],"to":[50,114,160],"predict":[51],"1000":[53],"per":[55],"PTM":[56,70,83,117,128,135,154],"type.":[57],"output":[59],"presented":[61],"at":[62,175,186],"the":[63,68,94,126,131,146],"amino":[64],"acid":[65],"level":[66],"user-selected":[69],"types.":[71],"has":[74,78],"been":[75],"benchmarked":[76],"demonstrated":[79],"competitive":[80],"performance":[81],"predictions":[85],"by":[86,97],"other":[87],"researchers.":[88],"In":[89,144],"this":[90],"webserver,":[91],"we":[92],"updated":[93,166],"previous":[95],"utilizing":[98],"more":[99],"advanced":[100],"ensemble":[101],"techniques,":[102],"visualization":[107],"multiple":[109],"PTMs":[110],"simultaneously":[111],"users":[113,122,159],"analyze":[115],"potential":[116],"cross-talks":[118],"directly.":[119],"Besides":[120],"prediction,":[121],"can":[123],"interactively":[124],"review":[125],"predicted":[127],"sites":[129],"context":[132],"known":[134],"annotations":[136,155],"3D":[139],"structures":[140],"through":[141],"homology-based":[142],"search.":[143],"addition,":[145],"server":[147,172],"maintains":[148],"local":[150],"database":[151,163],"pre-processed":[153],"from":[156],"Uniport/Swiss-Prot":[157],"download.":[161],"This":[162],"will":[164],"be":[165],"every":[167],"months.":[169],"available":[174,185],"https://www.musite.net.":[176],"stand-alone":[178],"tools":[179],"locally":[181],"using":[182],"https://github.com/duolinwang/MusiteDeep_web.":[187]},"counts_by_year":[{"year":2026,"cited_by_count":28},{"year":2025,"cited_by_count":75},{"year":2024,"cited_by_count":68},{"year":2023,"cited_by_count":53},{"year":2022,"cited_by_count":49},{"year":2021,"cited_by_count":38},{"year":2020,"cited_by_count":6}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
