{"id":"https://openalex.org/W3016296419","doi":"https://doi.org/10.1093/nar/gkaa235","title":"ProteinsPlus: interactive analysis of protein\u2013ligand binding interfaces","display_name":"ProteinsPlus: interactive analysis of protein\u2013ligand binding interfaces","publication_year":2020,"publication_date":"2020-04-14","ids":{"openalex":"https://openalex.org/W3016296419","doi":"https://doi.org/10.1093/nar/gkaa235","mag":"3016296419","pmid":"https://pubmed.ncbi.nlm.nih.gov/32297936"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa235","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa235","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W48/33433349/gkaa235.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/W1/W48/33433349/gkaa235.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016538485","display_name":"Katrin Stierand","orcid":"https://orcid.org/0000-0003-3248-8023"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Katrin Sch\u00f6ning-Stierand","raw_affiliation_strings":["Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039321558","display_name":"Konrad Diedrich","orcid":"https://orcid.org/0000-0001-8171-0888"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Konrad Diedrich","raw_affiliation_strings":["Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033941979","display_name":"Rainer F\u00e4hrrolfes","orcid":null},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rainer F\u00e4hrrolfes","raw_affiliation_strings":["Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048360660","display_name":"Florian Flachsenberg","orcid":"https://orcid.org/0000-0001-7051-8719"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Florian Flachsenberg","raw_affiliation_strings":["Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003179071","display_name":"Agnes Meyder","orcid":"https://orcid.org/0000-0001-8519-5780"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Agnes Meyder","raw_affiliation_strings":["Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8519-5780","affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077542460","display_name":"Eva Nittinger","orcid":"https://orcid.org/0000-0001-7231-7996"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Eva Nittinger","raw_affiliation_strings":["Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091169959","display_name":"Ruben Steinegger","orcid":null},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ruben Steinegger","raw_affiliation_strings":["Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083205378","display_name":"Matthias Rarey","orcid":"https://orcid.org/0000-0002-9553-6531"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Matthias Rarey","raw_affiliation_strings":["Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9553-6531","affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg, ZBH - Center for Bioinformatics (ZBH), 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5016538485","https://openalex.org/A5083205378"],"corresponding_institution_ids":["https://openalex.org/I159176309"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":13.5039,"has_fulltext":false,"cited_by_count":268,"citation_normalized_percentile":{"value":0.99389282,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"48","issue":"W1","first_page":"W48","last_page":"W53"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6144179105758667},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5906050801277161},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.5769349336624146},{"id":"https://openalex.org/keywords/protein-ligand","display_name":"Protein ligand","score":0.5437352657318115},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5274285078048706},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.5160043239593506},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.5156996846199036},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.48858365416526794},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.48638394474983215},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.47403931617736816},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4590614438056946},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4424285292625427},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.42881375551223755},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4268144965171814},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37184274196624756},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3615294098854065},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3372732400894165},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3129914402961731},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13497799634933472},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.12296971678733826},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11890953779220581}],"concepts":[{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6144179105758667},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5906050801277161},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.5769349336624146},{"id":"https://openalex.org/C109095088","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Protein ligand","level":2,"score":0.5437352657318115},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5274285078048706},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.5160043239593506},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.5156996846199036},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.48858365416526794},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.48638394474983215},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.47403931617736816},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4590614438056946},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4424285292625427},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.42881375551223755},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4268144965171814},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37184274196624756},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3615294098854065},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3372732400894165},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3129914402961731},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13497799634933472},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.12296971678733826},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11890953779220581},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkaa235","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa235","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W48/33433349/gkaa235.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:32297936","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32297936","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7319454","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7319454","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa235","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa235","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W48/33433349/gkaa235.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[{"id":"https://openalex.org/G8942490779","display_name":null,"funder_award_id":"031L0105","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1970799005","https://openalex.org/W1978846531","https://openalex.org/W1982885147","https://openalex.org/W1983194490","https://openalex.org/W1985255838","https://openalex.org/W1998000033","https://openalex.org/W2000077914","https://openalex.org/W2006213118","https://openalex.org/W2025816743","https://openalex.org/W2059924427","https://openalex.org/W2069152576","https://openalex.org/W2073798474","https://openalex.org/W2095521702","https://openalex.org/W2099672497","https://openalex.org/W2100598991","https://openalex.org/W2103300124","https://openalex.org/W2114779636","https://openalex.org/W2130479394","https://openalex.org/W2131417105","https://openalex.org/W2132629607","https://openalex.org/W2167549547","https://openalex.org/W2238707319","https://openalex.org/W2484603661","https://openalex.org/W2560264526","https://openalex.org/W2582406409","https://openalex.org/W2589875042","https://openalex.org/W2610550630","https://openalex.org/W2614021444","https://openalex.org/W2755903007","https://openalex.org/W2763443264","https://openalex.org/W2806399642","https://openalex.org/W2883886126","https://openalex.org/W2887475976","https://openalex.org/W2898210859","https://openalex.org/W2898364362","https://openalex.org/W2899903294","https://openalex.org/W2900090807","https://openalex.org/W2900674118","https://openalex.org/W2946457131","https://openalex.org/W2950200056","https://openalex.org/W2973523639","https://openalex.org/W2978232173","https://openalex.org/W4231059664"],"related_works":["https://openalex.org/W3126783617","https://openalex.org/W2732388178","https://openalex.org/W3093468851","https://openalex.org/W4353055924","https://openalex.org/W2806488847","https://openalex.org/W2121688928","https://openalex.org/W4387033830","https://openalex.org/W3013529667","https://openalex.org/W2772651271","https://openalex.org/W4389958586"],"abstract_inverted_index":{"Due":[0],"to":[1,38,54,100],"the":[2,39,67,93,138,174],"increasing":[3],"amount":[4],"of":[5,30,58,96,127,142,153],"publicly":[6],"available":[7,168],"protein":[8],"structures":[9,103],"searching,":[10],"enriching":[11],"and":[12,51,121,145,149,180],"investigating":[13],"these":[14,33],"data":[15,131],"still":[16],"poses":[17],"a":[18,27,55,143,170],"challenging":[19],"task.":[20],"The":[21,35,109],"ProteinsPlus":[22,68,97,166],"web":[23,36,69],"service":[24,70,172],"(https://proteins.plus)":[25],"offers":[26],"broad":[28],"range":[29],"tools":[31,163],"addressing":[32],"challenges.":[34],"interface":[37],"tool":[40,110],"collection":[41,111],"focusing":[42],"on":[43,92,102,157],"protein-ligand":[44,129],"interactions":[45],"has":[46,71,81,112],"been":[47,72,113],"geared":[48],"towards":[49],"easy":[50],"intuitive":[52],"access":[53],"large":[56],"variety":[57],"functionality":[59,89],"for":[60],"life":[61],"scientists.":[62],"Since":[63],"our":[64],"last":[65],"publication,":[66],"extended":[73],"by":[74,115,165],"additional":[75],"services":[76],"as":[77,79],"well":[78],"it":[80],"undergone":[82],"substantial":[83],"infrastructural":[84],"improvements.":[85],"A":[86],"keyword":[87],"search":[88],"was":[90],"added":[91],"start":[94],"page":[95],"enabling":[98,173],"users":[99],"work":[101],"without":[104],"knowing":[105],"their":[106],"PDB":[107],"code.":[108],"augmented":[114],"three":[116],"tools:":[117],"StructureProfiler":[118],"validates":[119],"ligands":[120],"active":[122],"sites":[123,141],"using":[124],"selection":[125],"criteria":[126],"well-established":[128],"benchmark":[130],"sets,":[132],"WarPP":[133],"places":[134],"water":[135],"molecules":[136],"in":[137,177],"ligand":[139],"binding":[140],"protein,":[144],"METALizer":[146],"calculates,":[147],"predicts":[148],"scores":[150],"coordination":[151],"geometries":[152],"metal":[154],"ions":[155],"based":[156],"surrounding":[158],"complex":[159],"atoms.":[160],"Additionally,":[161],"all":[162],"provided":[164],"are":[167],"through":[169],"REST":[171],"automated":[175],"integration":[176],"structure":[178],"processing":[179],"modeling":[181],"pipelines.":[182]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":49},{"year":2024,"cited_by_count":44},{"year":2023,"cited_by_count":67},{"year":2022,"cited_by_count":70},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":4}],"updated_date":"2026-06-02T09:04:35.204637","created_date":"2025-10-10T00:00:00"}
