{"id":"https://openalex.org/W3017323102","doi":"https://doi.org/10.1093/nar/gkaa220","title":"Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization","display_name":"Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization","publication_year":2020,"publication_date":"2020-03-24","ids":{"openalex":"https://openalex.org/W3017323102","doi":"https://doi.org/10.1093/nar/gkaa220","mag":"3017323102","pmid":"https://pubmed.ncbi.nlm.nih.gov/32301980"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa220","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa220","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W177/33433206/gkaa220.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/W1/W177/33433206/gkaa220.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005974028","display_name":"Joachim Wolff","orcid":"https://orcid.org/0000-0001-9985-955X"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Joachim Wolff","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79110 Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032084468","display_name":"Leily Rabbani","orcid":null},"institutions":[{"id":"https://openalex.org/I4210164321","display_name":"Max Planck Institute of Immunobiology and Epigenetics","ror":"https://ror.org/058xzat49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210164321"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Leily Rabbani","raw_affiliation_strings":["Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg im Breisgau, Germany"],"affiliations":[{"raw_affiliation_string":"Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg im Breisgau, Germany","institution_ids":["https://openalex.org/I4210164321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024297412","display_name":"Ralf Gilsbach","orcid":"https://orcid.org/0000-0002-0895-1535"},"institutions":[{"id":"https://openalex.org/I114090438","display_name":"Goethe University Frankfurt","ror":"https://ror.org/04cvxnb49","country_code":"DE","type":"education","lineage":["https://openalex.org/I114090438"]},{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ralf Gilsbach","raw_affiliation_strings":["German Center of Cardiovascular Research (DZHK), Partner site RheinMain, Frankfurt am Main, Germany","Institute for Cardiovascular Physiology, Goethe University, Frankfurt am Main, Germany","Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, University of Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"German Center of Cardiovascular Research (DZHK), Partner site RheinMain, Frankfurt am Main, Germany","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Institute for Cardiovascular Physiology, Goethe University, Frankfurt am Main, Germany","institution_ids":["https://openalex.org/I114090438"]},{"raw_affiliation_string":"Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine, University of Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076609646","display_name":"Gautier Richard","orcid":"https://orcid.org/0000-0003-3663-4569"},"institutions":[{"id":"https://openalex.org/I2800285241","display_name":"Institut Agro Rennes-Angers","ror":"https://ror.org/01s3fs709","country_code":"FR","type":"education","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210141755","display_name":"Institut de G\u00e9n\u00e9tique, Environnement et Protection des Plantes","ror":"https://ror.org/038kxsm48","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210141755","https://openalex.org/I4399657933","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gautier Richard","raw_affiliation_strings":["INRAE, Agrocampus Ouest, Universit\u00e9 de Rennes, IGEPP, F-35650 Le Rheu, France"],"affiliations":[{"raw_affiliation_string":"INRAE, Agrocampus Ouest, Universit\u00e9 de Rennes, IGEPP, F-35650 Le Rheu, France","institution_ids":["https://openalex.org/I2800285241","https://openalex.org/I4210141755","https://openalex.org/I56067802","https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060587616","display_name":"Thomas Manke","orcid":"https://orcid.org/0000-0003-3702-0868"},"institutions":[{"id":"https://openalex.org/I4210164321","display_name":"Max Planck Institute of Immunobiology and Epigenetics","ror":"https://ror.org/058xzat49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210164321"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Manke","raw_affiliation_strings":["Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg im Breisgau, Germany"],"affiliations":[{"raw_affiliation_string":"Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg im Breisgau, Germany","institution_ids":["https://openalex.org/I4210164321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017672883","display_name":"Rolf Backofen","orcid":"https://orcid.org/0000-0001-8231-3323"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rolf Backofen","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79110 Freiburg, Germany","Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Sch\u00e4nzlestr. 18, 79104 Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Signalling Research Centres BIOSS and CIBSS, University of Freiburg, Sch\u00e4nzlestr. 18, 79104 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006559585","display_name":"Bj\u00f6rn Gr\u00fcning","orcid":"https://orcid.org/0000-0002-3079-6586"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bj\u00f6rn A Gr\u00fcning","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79110 Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5005974028"],"corresponding_institution_ids":["https://openalex.org/I161046081"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":17.3041,"has_fulltext":true,"cited_by_count":476,"citation_normalized_percentile":{"value":0.99611053,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"48","issue":"W1","first_page":"W177","last_page":"W184"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6221508979797363},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5899618268013},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5019609928131104},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.49659568071365356},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4714523255825043},{"id":"https://openalex.org/keywords/astrophysics","display_name":"Astrophysics","score":0.45412886142730713},{"id":"https://openalex.org/keywords/galaxy","display_name":"Galaxy","score":0.45368680357933044},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4443780481815338},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4113558530807495},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3991785943508148},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3307850658893585},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.27383488416671753},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.21789821982383728},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.21311762928962708},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11344841122627258}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6221508979797363},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5899618268013},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5019609928131104},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.49659568071365356},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4714523255825043},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.45412886142730713},{"id":"https://openalex.org/C98444146","wikidata":"https://www.wikidata.org/wiki/Q318","display_name":"Galaxy","level":2,"score":0.45368680357933044},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4443780481815338},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4113558530807495},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3991785943508148},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3307850658893585},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.27383488416671753},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.21789821982383728},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.21311762928962708},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11344841122627258},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005821","descriptor_name":"Genetic Techniques","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D005821","descriptor_name":"Genetic Techniques","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D005821","descriptor_name":"Genetic Techniques","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D005821","descriptor_name":"Genetic Techniques","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkaa220","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa220","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W177/33433206/gkaa220.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:32301980","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32301980","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:hal-03141913v1","is_oa":true,"landing_page_url":"https://hal.inrae.fr/hal-03141913","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2020, 48 (W1), pp.W177-W184. ⟨10.1093/nar/gkaa220⟩","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:7319437","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7319437","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa220","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa220","pdf_url":"https://academic.oup.com/nar/article-pdf/48/W1/W177/33433206/gkaa220.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2431772652","display_name":null,"funder_award_id":"031 A538A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G4866485077","display_name":null,"funder_award_id":"EXC-2189","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G4917990081","display_name":null,"funder_award_id":"Project ID 390939984","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4935269520","display_name":null,"funder_award_id":"390939984","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G5088104505","display_name":null,"funder_award_id":"de.NBI","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G5168466499","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G5233312690","display_name":null,"funder_award_id":"031 L0101C","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G5831990246","display_name":null,"funder_award_id":"de.NBI-RBC","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G5976804734","display_name":null,"funder_award_id":"390939984","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6455713283","display_name":null,"funder_award_id":"CIBSS","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6716378445","display_name":null,"funder_award_id":"EXC-2189-Project ID 390939984","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6955755495","display_name":null,"funder_award_id":"Germany","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G762232396","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7637189884","display_name":null,"funder_award_id":"031 A538A de.NBI-RBC","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7936941248","display_name":null,"funder_award_id":"CIBSS-EXC-2189","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7942449511","display_name":null,"funder_award_id":"EXC-2189","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8413167928","display_name":null,"funder_award_id":"Excellence Strategy","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G983559663","display_name":null,"funder_award_id":"CRC992","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320330124","display_name":"German Network for Bioinformatics Infrastructure","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3017323102.pdf","grobid_xml":"https://content.openalex.org/works/W3017323102.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1818907527","https://openalex.org/W1840664805","https://openalex.org/W1965863160","https://openalex.org/W1973062929","https://openalex.org/W1985621639","https://openalex.org/W1991149014","https://openalex.org/W2009576540","https://openalex.org/W2014677321","https://openalex.org/W2070021921","https://openalex.org/W2073026107","https://openalex.org/W2090037139","https://openalex.org/W2090632681","https://openalex.org/W2097798909","https://openalex.org/W2102368172","https://openalex.org/W2115464628","https://openalex.org/W2134907628","https://openalex.org/W2161212572","https://openalex.org/W2171808845","https://openalex.org/W2185693210","https://openalex.org/W2346143774","https://openalex.org/W2407798683","https://openalex.org/W2481029670","https://openalex.org/W2523285811","https://openalex.org/W2530292798","https://openalex.org/W2559911833","https://openalex.org/W2731989040","https://openalex.org/W2757387674","https://openalex.org/W2765745983","https://openalex.org/W2768310712","https://openalex.org/W2807993805","https://openalex.org/W2888425844","https://openalex.org/W2949773289","https://openalex.org/W2951322997","https://openalex.org/W2952157594","https://openalex.org/W2960979937","https://openalex.org/W2976681669","https://openalex.org/W2984602366","https://openalex.org/W2994813193","https://openalex.org/W3002052930","https://openalex.org/W3009259903","https://openalex.org/W3009864252","https://openalex.org/W3178459825","https://openalex.org/W4232061444","https://openalex.org/W4249672879","https://openalex.org/W4284990903","https://openalex.org/W6679663036","https://openalex.org/W6684903834"],"related_works":["https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2154046714","https://openalex.org/W2189613078","https://openalex.org/W2579659702","https://openalex.org/W2923661510","https://openalex.org/W1574055964","https://openalex.org/W1965329638","https://openalex.org/W2542318691","https://openalex.org/W3160708108"],"abstract_inverted_index":{"The":[0],"Galaxy":[1,41,111],"HiCExplorer":[2,42],"provides":[3],"a":[4,75],"web":[5],"service":[6],"at":[7],"https://hicexplorer.usegalaxy.eu.":[8],"It":[9],"enables":[10],"the":[11,38,52,68,81,84],"integrative":[12],"analysis":[13,53,61,69,109],"of":[14,54,62,70,78,83,89],"chromosome":[15],"conformation":[16],"by":[17,73],"providing":[18],"tools":[19,49],"and":[20,26,32,56,95],"computational":[21],"resources":[22],"to":[23,50,57],"pre-process,":[24],"analyse":[25],"visualize":[27],"Hi-C,":[28],"Capture":[29],"Hi-C":[30,34,63,101,107],"(cHi-C)":[31],"single-cell":[33],"(scHi-C)":[35],"data.":[36,64],"Since":[37],"last":[39],"publication,":[40],"has":[43],"been":[44],"expanded":[45],"considerably":[46],"with":[47,110],"new":[48],"facilitate":[51],"cHi-C":[55],"provide":[58],"an":[59],"in-depth":[60],"Moreover,":[65],"it":[66],"supports":[67],"scHi-C":[71],"data":[72,108],"offering":[74],"broad":[76],"range":[77],"tools.":[79],"With":[80],"help":[82],"standard":[85],"graphical":[86],"user":[87],"interface":[88],"Galaxy,":[90],"presented":[91],"workflows,":[92],"extensive":[93],"documentation":[94],"tutorials,":[96],"novices":[97],"as":[98,100],"well":[99],"experts":[102],"are":[103],"supported":[104],"in":[105],"their":[106],"HiCExplorer.":[112]},"counts_by_year":[{"year":2026,"cited_by_count":42},{"year":2025,"cited_by_count":116},{"year":2024,"cited_by_count":127},{"year":2023,"cited_by_count":68},{"year":2022,"cited_by_count":73},{"year":2021,"cited_by_count":40},{"year":2020,"cited_by_count":10}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}