{"id":"https://openalex.org/W3113578674","doi":"https://doi.org/10.1093/nar/gkaa1096","title":"VIPERdb v3.0: a structure-based data analytics platform for viral capsids","display_name":"VIPERdb v3.0: a structure-based data analytics platform for viral capsids","publication_year":2020,"publication_date":"2020-12-10","ids":{"openalex":"https://openalex.org/W3113578674","doi":"https://doi.org/10.1093/nar/gkaa1096","mag":"3113578674","pmid":"https://pubmed.ncbi.nlm.nih.gov/33313778"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa1096","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa1096","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkaa1096","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010238985","display_name":"Daniel Montiel-Garcia","orcid":null},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]},{"id":"https://openalex.org/I38234673","display_name":"Instituto Tecnol\u00f3gico Superior de Irapuato","ror":"https://ror.org/01da06998","country_code":"MX","type":"education","lineage":["https://openalex.org/I1302736544","https://openalex.org/I38234673","https://openalex.org/I4210090124","https://openalex.org/I4413696010"]},{"id":"https://openalex.org/I4210090124","display_name":"Tecnol\u00f3gico Nacional de M\u00e9xico","ror":"https://ror.org/00davry38","country_code":"MX","type":"funder","lineage":["https://openalex.org/I1302736544","https://openalex.org/I4210090124","https://openalex.org/I4413696010"]}],"countries":["MX","US"],"is_corresponding":false,"raw_author_name":"Daniel Montiel-Garcia","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA","Departments of Computer Systems and Information Technologies, Tecnologico Nacional de Mexico & Instituto Tecnol\u00f3gico Superior de Irapuato, Irapuato, Guanajuato, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I123431417"]},{"raw_affiliation_string":"Departments of Computer Systems and Information Technologies, Tecnologico Nacional de Mexico & Instituto Tecnol\u00f3gico Superior de Irapuato, Irapuato, Guanajuato, M\u00e9xico","institution_ids":["https://openalex.org/I38234673","https://openalex.org/I4210090124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033740894","display_name":"Nelly Santoyo-Rivera","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090124","display_name":"Tecnol\u00f3gico Nacional de M\u00e9xico","ror":"https://ror.org/00davry38","country_code":"MX","type":"funder","lineage":["https://openalex.org/I1302736544","https://openalex.org/I4210090124","https://openalex.org/I4413696010"]},{"id":"https://openalex.org/I38234673","display_name":"Instituto Tecnol\u00f3gico Superior de Irapuato","ror":"https://ror.org/01da06998","country_code":"MX","type":"education","lineage":["https://openalex.org/I1302736544","https://openalex.org/I38234673","https://openalex.org/I4210090124","https://openalex.org/I4413696010"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Nelly Santoyo-Rivera","raw_affiliation_strings":["Departments of Computer Systems and Information Technologies, Tecnologico Nacional de Mexico & Instituto Tecnol\u00f3gico Superior de Irapuato, Irapuato, Guanajuato, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Departments of Computer Systems and Information Technologies, Tecnologico Nacional de Mexico & Instituto Tecnol\u00f3gico Superior de Irapuato, Irapuato, Guanajuato, M\u00e9xico","institution_ids":["https://openalex.org/I38234673","https://openalex.org/I4210090124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007559144","display_name":"Phuong T. Ho","orcid":"https://orcid.org/0000-0003-4732-4558"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Phuong Ho","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048374538","display_name":"Mauricio Carrillo\u2010Tripp","orcid":"https://orcid.org/0000-0003-0060-6486"},"institutions":[{"id":"https://openalex.org/I4210138439","display_name":"Centro de Investigaci\u00f3n en Materiales Avanzados","ror":"https://ror.org/03h954e30","country_code":"MX","type":"facility","lineage":["https://openalex.org/I4210138439"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Mauricio Carrillo-Tripp","raw_affiliation_strings":["Biomolecular Diversity Laboratory, Centro de Investigaci\u00f3n y de Estudios Avanzados Unidad Monterrey, V\u00eda del Conocimiento 201, Parque PIIT, C.P. 66600, Apodaca, Nuevo Le\u00f3n, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Biomolecular Diversity Laboratory, Centro de Investigaci\u00f3n y de Estudios Avanzados Unidad Monterrey, V\u00eda del Conocimiento 201, Parque PIIT, C.P. 66600, Apodaca, Nuevo Le\u00f3n, M\u00e9xico","institution_ids":["https://openalex.org/I4210138439"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103676849","display_name":"Charles L. Brooks","orcid":null},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles\u00a0L Brooks III","raw_affiliation_strings":["Department of Biophysics, University of Michigan, Ann Arbor, MI, USA","Department of Chemistry, University of Michigan, Ann Arbor, MI, USA","Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biophysics, University of Michigan, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Department of Chemistry, University of Michigan, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078724396","display_name":"John E. Johnson","orcid":"https://orcid.org/0000-0001-9782-3721"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John E Johnson","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026834279","display_name":"Vijay Reddy","orcid":"https://orcid.org/0000-0003-4638-8277"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vijay S Reddy","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I123431417"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5026834279"],"corresponding_institution_ids":["https://openalex.org/I123431417"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.8407,"has_fulltext":false,"cited_by_count":77,"citation_normalized_percentile":{"value":0.96746599,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"49","issue":"D1","first_page":"D809","last_page":"D816"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10151","display_name":"Hepatitis C virus research","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/2721","display_name":"Hepatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/capsid","display_name":"Capsid","score":0.7760363817214966},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.624415397644043},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6141144633293152},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5478829145431519},{"id":"https://openalex.org/keywords/virus-classification","display_name":"Virus classification","score":0.45020854473114014},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44058844447135925},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4357486367225647},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.407571017742157},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3481549620628357},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.18168407678604126},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.13796797394752502},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12805917859077454},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08929553627967834}],"concepts":[{"id":"https://openalex.org/C202878990","wikidata":"https://www.wikidata.org/wiki/Q830465","display_name":"Capsid","level":3,"score":0.7760363817214966},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.624415397644043},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6141144633293152},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5478829145431519},{"id":"https://openalex.org/C20850961","wikidata":"https://www.wikidata.org/wiki/Q478216","display_name":"Virus classification","level":4,"score":0.45020854473114014},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44058844447135925},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4357486367225647},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.407571017742157},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3481549620628357},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.18168407678604126},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.13796797394752502},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12805917859077454},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08929553627967834},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077488","descriptor_name":"Data Science","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077488","descriptor_name":"Data Science","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077488","descriptor_name":"Data Science","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002213","descriptor_name":"Capsid","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkaa1096","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa1096","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33313778","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33313778","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:6699116","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7779063","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7779063","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7779063","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa1096","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa1096","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.550000011920929,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G8906865121","display_name":null,"funder_award_id":"R21AI137580","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W2046182783","https://openalex.org/W2052097062","https://openalex.org/W2062733789","https://openalex.org/W2090595596","https://openalex.org/W2096525273","https://openalex.org/W2123540768","https://openalex.org/W2130479394","https://openalex.org/W2132629607","https://openalex.org/W2377064860","https://openalex.org/W2573751541","https://openalex.org/W2894116979","https://openalex.org/W3136918052","https://openalex.org/W4234797890","https://openalex.org/W4251386234"],"related_works":["https://openalex.org/W4401246297","https://openalex.org/W2137572138","https://openalex.org/W4316495397","https://openalex.org/W2968050865","https://openalex.org/W2977306144","https://openalex.org/W2076921277","https://openalex.org/W2033677185","https://openalex.org/W2079290149","https://openalex.org/W2464882480","https://openalex.org/W2900897541"],"abstract_inverted_index":{"VIrus":[0],"Particle":[1],"ExploreR":[2],"data":[3,20,53,84,167,173,182],"base":[4],"(VIPERdb)":[5],"(http://viperdb.scripps.edu)":[6],"is":[7],"a":[8,16,38,68,114,165],"curated":[9],"repository":[10],"of":[11,18,40,47,71,92,162],"virus":[12,24,41,87,98,103,147],"capsid":[13,140],"structures":[14,72,99,153],"and":[15,36,59,73,80,136,138,156,176],"database":[17,116],"structure-derived":[19,83],"along":[21],"with":[22,149],"various":[23],"specific":[25],"information.":[26],"VIPERdb":[27,48,155,163],"has":[28],"been":[29],"continuously":[30],"improved":[31],"for":[32,180],"over":[33],"20":[34],"years":[35],"contains":[37,50,113],"number":[39],"structure":[42],"analysis":[43],"tools.":[44],"The":[45],"release":[46,111,161],"v3.0":[49],"new":[51,110,160],"structure-based":[52],"analytics":[54,183],"tools":[55],"like":[56],"Multiple":[57],"Structure-based":[58],"Sequence":[60],"Alignment":[61],"(MSSA)":[62],"to":[63,78,131,145,151,169],"identify":[64],"hot-spot":[65],"residues":[66],"within":[67,85],"selected":[69],"group":[70],"an":[74,178],"anomaly":[75],"detection":[76],"application":[77],"analyze":[79],"curate":[81],"the":[82,90,106,109,125,159,172],"individual":[86],"families.":[88],"At":[89],"time":[91],"this":[93],"writing,":[94],"there":[95],"are":[96],"931":[97],"from":[100,134],"62":[101],"different":[102],"families":[104],"in":[105,154],"database.":[107],"Significantly,":[108],"also":[112],"standalone":[115],"called":[117],"'Virus":[118],"World":[119],"database'":[120],"(VWdb)":[121],"that":[122],"comprises":[123],"all":[124,171],"characterized":[126],"viruses":[127],"(\u223c181":[128],"000)":[129],"known":[130,152],"date,":[132],"gathered":[133],"ICTVdb":[135],"NCBI,":[137],"their":[139,146],"protein":[141],"sequences,":[142],"organized":[143],"according":[144],"taxonomy":[148],"links":[150],"PDB.":[157],"Moreover,":[158],"includes":[164],"service-oriented":[166],"engine":[168],"handle":[170],"access":[174],"requests":[175],"provides":[177],"interface":[179],"futuristic":[181],"using":[184],"machine":[185],"leaning":[186],"applications.":[187]},"counts_by_year":[{"year":2025,"cited_by_count":22},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
