{"id":"https://openalex.org/W3108860514","doi":"https://doi.org/10.1093/nar/gkaa1063","title":"HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine","display_name":"HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine","publication_year":2020,"publication_date":"2020-10-28","ids":{"openalex":"https://openalex.org/W3108860514","doi":"https://doi.org/10.1093/nar/gkaa1063","mag":"3108860514","pmid":"https://pubmed.ncbi.nlm.nih.gov/33264402"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkaa1063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa1063","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D1197/35364047/gkaa1063.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/49/D1/D1197/35364047/gkaa1063.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054273034","display_name":"Shuangsang Fang","orcid":null},"institutions":[{"id":"https://openalex.org/I17747738","display_name":"Beijing University of Chinese Medicine","ror":"https://ror.org/05damtm70","country_code":"CN","type":"education","lineage":["https://openalex.org/I17747738"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"ShuangSang Fang","raw_affiliation_strings":["Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China"],"affiliations":[{"raw_affiliation_string":"Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China","institution_ids":["https://openalex.org/I17747738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003244163","display_name":"Lei Dong","orcid":"https://orcid.org/0000-0003-2097-6679"},"institutions":[{"id":"https://openalex.org/I17747738","display_name":"Beijing University of Chinese Medicine","ror":"https://ror.org/05damtm70","country_code":"CN","type":"education","lineage":["https://openalex.org/I17747738"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Dong","raw_affiliation_strings":["Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China"],"affiliations":[{"raw_affiliation_string":"Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China","institution_ids":["https://openalex.org/I17747738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100324259","display_name":"Liu Liu","orcid":"https://orcid.org/0000-0001-9852-570X"},"institutions":[{"id":"https://openalex.org/I17747738","display_name":"Beijing University of Chinese Medicine","ror":"https://ror.org/05damtm70","country_code":"CN","type":"education","lineage":["https://openalex.org/I17747738"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liu Liu","raw_affiliation_strings":["Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China"],"affiliations":[{"raw_affiliation_string":"Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China","institution_ids":["https://openalex.org/I17747738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042914048","display_name":"Jincheng Guo","orcid":"https://orcid.org/0000-0002-5616-6910"},"institutions":[{"id":"https://openalex.org/I17747738","display_name":"Beijing University of Chinese Medicine","ror":"https://ror.org/05damtm70","country_code":"CN","type":"education","lineage":["https://openalex.org/I17747738"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"JinCheng Guo","raw_affiliation_strings":["Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China"],"affiliations":[{"raw_affiliation_string":"Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China","institution_ids":["https://openalex.org/I17747738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010222360","display_name":"Lianhe Zhao","orcid":"https://orcid.org/0000-0002-7736-2443"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"LianHe Zhao","raw_affiliation_strings":["Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210090176","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042836640","display_name":"Jia-yuan Zhang","orcid":"https://orcid.org/0000-0002-1237-761X"},"institutions":[{"id":"https://openalex.org/I17747738","display_name":"Beijing University of Chinese Medicine","ror":"https://ror.org/05damtm70","country_code":"CN","type":"education","lineage":["https://openalex.org/I17747738"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"JiaYuan Zhang","raw_affiliation_strings":["Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China"],"affiliations":[{"raw_affiliation_string":"Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China","institution_ids":["https://openalex.org/I17747738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089019310","display_name":"Dechao Bu","orcid":"https://orcid.org/0000-0002-8833-5432"},"institutions":[{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"DeChao Bu","raw_affiliation_strings":["Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210090176","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017427010","display_name":"Xinkui Liu","orcid":"https://orcid.org/0000-0002-0609-6651"},"institutions":[{"id":"https://openalex.org/I17747738","display_name":"Beijing University of Chinese Medicine","ror":"https://ror.org/05damtm70","country_code":"CN","type":"education","lineage":["https://openalex.org/I17747738"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"XinKui Liu","raw_affiliation_strings":["Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China"],"affiliations":[{"raw_affiliation_string":"Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China","institution_ids":["https://openalex.org/I17747738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031007522","display_name":"Peipei Huo","orcid":"https://orcid.org/0000-0003-4508-4036"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"PeiPei Huo","raw_affiliation_strings":["Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210090176","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008758302","display_name":"Wanchen Cao","orcid":null},"institutions":[{"id":"https://openalex.org/I17747738","display_name":"Beijing University of Chinese Medicine","ror":"https://ror.org/05damtm70","country_code":"CN","type":"education","lineage":["https://openalex.org/I17747738"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"WanChen Cao","raw_affiliation_strings":["Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China"],"affiliations":[{"raw_affiliation_string":"Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China","institution_ids":["https://openalex.org/I17747738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071845041","display_name":"Qiongye Dong","orcid":"https://orcid.org/0000-0003-2137-0724"},"institutions":[{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"QiongYe Dong","raw_affiliation_strings":["Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210090176","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064735710","display_name":"Jiarui Wu","orcid":"https://orcid.org/0000-0002-1617-6110"},"institutions":[{"id":"https://openalex.org/I17747738","display_name":"Beijing University of Chinese Medicine","ror":"https://ror.org/05damtm70","country_code":"CN","type":"education","lineage":["https://openalex.org/I17747738"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"JiaRui Wu","raw_affiliation_strings":["Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China"],"affiliations":[{"raw_affiliation_string":"Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China","institution_ids":["https://openalex.org/I17747738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046015280","display_name":"Xiaoxi Zeng","orcid":"https://orcid.org/0000-0001-9946-4291"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210089761","display_name":"West China Hospital of Sichuan University","ror":"https://ror.org/007mrxy13","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210089761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoxi Zeng","raw_affiliation_strings":["West China Biomedical Big Data Center, Division of Nephrology, Kidney Research Institute, West China Hospital of Sichuan University, Chengdu 610041, China"],"affiliations":[{"raw_affiliation_string":"West China Biomedical Big Data Center, Division of Nephrology, Kidney Research Institute, West China Hospital of Sichuan University, Chengdu 610041, China","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210089761"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059651530","display_name":"Yang Wu","orcid":"https://orcid.org/0000-0001-6547-9524"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yang Wu","raw_affiliation_strings":["Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210090176","https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000991048","display_name":"Yi Zhao","orcid":"https://orcid.org/0000-0001-6046-8420"},"institutions":[{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I17747738","display_name":"Beijing University of Chinese Medicine","ror":"https://ror.org/05damtm70","country_code":"CN","type":"education","lineage":["https://openalex.org/I17747738"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yi Zhao","raw_affiliation_strings":["Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China","Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China"],"affiliations":[{"raw_affiliation_string":"Beijing University of Chinese Medicine, Chaoyang District, Beijing 100029, China","institution_ids":["https://openalex.org/I17747738"]},{"raw_affiliation_string":"Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100190, China","institution_ids":["https://openalex.org/I4210090176","https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5000991048","https://openalex.org/A5059651530"],"corresponding_institution_ids":["https://openalex.org/I17747738","https://openalex.org/I19820366","https://openalex.org/I4210090176"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":47.2592,"has_fulltext":false,"cited_by_count":616,"citation_normalized_percentile":{"value":0.99973682,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"49","issue":"D1","first_page":"D1197","last_page":"D1206"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12817","display_name":"Pharmacological Effects of Natural Compounds","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12817","display_name":"Pharmacological Effects of Natural Compounds","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11709","display_name":"Traditional Chinese Medicine Analysis","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/herb","display_name":"Herb","score":0.721729576587677},{"id":"https://openalex.org/keywords/chinese-herbs","display_name":"Chinese herbs","score":0.63563072681427},{"id":"https://openalex.org/keywords/traditional-chinese-medicine","display_name":"Traditional Chinese medicine","score":0.495367169380188},{"id":"https://openalex.org/keywords/medicinal-herbs","display_name":"Medicinal herbs","score":0.4933268129825592},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4668444097042084},{"id":"https://openalex.org/keywords/traditional-medicine","display_name":"Traditional medicine","score":0.45811834931373596},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4365575313568115},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42634469270706177},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.41819703578948975},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2832389771938324},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19584855437278748},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13979783654212952},{"id":"https://openalex.org/keywords/alternative-medicine","display_name":"Alternative medicine","score":0.08474239706993103}],"concepts":[{"id":"https://openalex.org/C2779824472","wikidata":"https://www.wikidata.org/wiki/Q207123","display_name":"Herb","level":3,"score":0.721729576587677},{"id":"https://openalex.org/C2909810673","wikidata":"https://www.wikidata.org/wiki/Q261503","display_name":"Chinese herbs","level":4,"score":0.63563072681427},{"id":"https://openalex.org/C188947578","wikidata":"https://www.wikidata.org/wiki/Q200253","display_name":"Traditional Chinese medicine","level":3,"score":0.495367169380188},{"id":"https://openalex.org/C2991655182","wikidata":"https://www.wikidata.org/wiki/Q188840","display_name":"Medicinal herbs","level":2,"score":0.4933268129825592},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4668444097042084},{"id":"https://openalex.org/C556039675","wikidata":"https://www.wikidata.org/wiki/Q771035","display_name":"Traditional medicine","level":1,"score":0.45811834931373596},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4365575313568115},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42634469270706177},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.41819703578948975},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2832389771938324},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19584855437278748},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13979783654212952},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.08474239706993103},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008516","descriptor_name":"Medicine, Chinese Traditional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008516","descriptor_name":"Medicine, Chinese Traditional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008516","descriptor_name":"Medicine, Chinese Traditional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010936","descriptor_name":"Plant Extracts","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D010936","descriptor_name":"Plant Extracts","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D010936","descriptor_name":"Plant Extracts","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D010936","descriptor_name":"Plant Extracts","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010936","descriptor_name":"Plant Extracts","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010936","descriptor_name":"Plant Extracts","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058990","descriptor_name":"Molecular Targeted Therapy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058990","descriptor_name":"Molecular Targeted Therapy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058990","descriptor_name":"Molecular Targeted Therapy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkaa1063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa1063","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D1197/35364047/gkaa1063.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:33264402","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33264402","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:6699089","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7779036","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7779036","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7779036","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkaa1063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkaa1063","pdf_url":"https://academic.oup.com/nar/article-pdf/49/D1/D1197/35364047/gkaa1063.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G3108114227","display_name":null,"funder_award_id":"2018YFD1000604","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G343520545","display_name":null,"funder_award_id":"2018YFC1313000","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3672777899","display_name":null,"funder_award_id":"91740113","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4159343519","display_name":null,"funder_award_id":"2019YFC1709801","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G422962775","display_name":null,"funder_award_id":"LY21C060003","funder_id":"https://openalex.org/F4320338464","funder_display_name":"Natural Science Foundation of Zhejiang Province"},{"id":"https://openalex.org/G4502286047","display_name":null,"funder_award_id":"2018YFC1313001","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5798371271","display_name":null,"funder_award_id":"2019M660033","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G6033746321","display_name":null,"funder_award_id":"20186060","funder_id":"https://openalex.org/F4320332238","funder_display_name":"Center for Africana Studies, Johns Hopkins University"},{"id":"https://openalex.org/G7536392352","display_name":null,"funder_award_id":"32070670","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7574132292","display_name":null,"funder_award_id":"2018YFC1704106","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8334022656","display_name":null,"funder_award_id":"2018YFC1704100","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320332238","display_name":"Center for Africana Studies, Johns Hopkins University","ror":"https://ror.org/00za53h95"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320338464","display_name":"Natural Science Foundation of Zhejiang Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3108860514.pdf","grobid_xml":"https://content.openalex.org/works/W3108860514.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1495214424","https://openalex.org/W1509405108","https://openalex.org/W1920244754","https://openalex.org/W1965003536","https://openalex.org/W1993352447","https://openalex.org/W2002223640","https://openalex.org/W2004307038","https://openalex.org/W2022095992","https://openalex.org/W2035618305","https://openalex.org/W2050113624","https://openalex.org/W2080610214","https://openalex.org/W2088226047","https://openalex.org/W2110065044","https://openalex.org/W2124679671","https://openalex.org/W2132182488","https://openalex.org/W2132832769","https://openalex.org/W2138207763","https://openalex.org/W2140287290","https://openalex.org/W2142019735","https://openalex.org/W2146512944","https://openalex.org/W2148708580","https://openalex.org/W2159092541","https://openalex.org/W2169456326","https://openalex.org/W2339794985","https://openalex.org/W2341128841","https://openalex.org/W2474747771","https://openalex.org/W2493912138","https://openalex.org/W2554320328","https://openalex.org/W2568779902","https://openalex.org/W2595454228","https://openalex.org/W2612467560","https://openalex.org/W2766490148","https://openalex.org/W2767891136","https://openalex.org/W2767918570","https://openalex.org/W2774533844","https://openalex.org/W2796168562","https://openalex.org/W2896015292","https://openalex.org/W2896954393","https://openalex.org/W2897805491","https://openalex.org/W2898468989","https://openalex.org/W2899070097","https://openalex.org/W2899291554","https://openalex.org/W2900502372","https://openalex.org/W2901332105","https://openalex.org/W2947017644","https://openalex.org/W2950595506","https://openalex.org/W2971393852","https://openalex.org/W2983166786","https://openalex.org/W2987928072","https://openalex.org/W3017312058","https://openalex.org/W3025010741","https://openalex.org/W3025733956","https://openalex.org/W4247513463","https://openalex.org/W4249478384","https://openalex.org/W6732085513","https://openalex.org/W6769393422","https://openalex.org/W6770414484"],"related_works":["https://openalex.org/W2361548809","https://openalex.org/W2402777966","https://openalex.org/W2417152746","https://openalex.org/W2982709555","https://openalex.org/W2370805850","https://openalex.org/W2393979392","https://openalex.org/W2163626354","https://openalex.org/W2382387258","https://openalex.org/W2375657128","https://openalex.org/W2424823756"],"abstract_inverted_index":{"Pharmacotranscriptomics":[0],"has":[1],"become":[2],"a":[3,69],"powerful":[4],"approach":[5],"for":[6,32,44,63,120,134,152],"evaluating":[7,93],"the":[8,108,116,192],"therapeutic":[9],"efficacy":[10],"of":[11,20,35,75,194],"drugs":[12,105],"and":[13,46,72,96,102,130,142,158,166,173,177,196],"discovering":[14],"new":[15],"drug":[16,200],"targets.":[17],"Recently,":[18],"studies":[19,39],"traditional":[21],"Chinese":[22,79],"medicine":[23],"(TCM)":[24],"have":[25,40],"increasingly":[26],"turned":[27],"to":[28,49,114,147,170],"high-throughput":[29,70,91],"transcriptomic":[30],"screens":[31],"molecular":[33],"effects":[34],"herbs/ingredients.":[36],"And":[37,203],"numerous":[38],"examined":[41],"gene":[42,86,128],"targets":[43,129,165],"herbs/ingredients,":[45,95],"link":[47],"herbs/ingredients":[48,101,136],"various":[50],"modern":[51,104,121,132,199],"diseases.":[52],"However,":[53],"there":[54],"is":[55,205],"currently":[56],"no":[57],"systematic":[58],"database":[59,74,156],"organizing":[60],"these":[61],"data":[62,151],"TCM.":[64],"Therefore,":[65],"we":[66,124,161],"built":[67],"HERB,":[68],"experiment-":[71],"reference-guided":[73],"TCM,":[76],"with":[77,155],"its":[78],"name":[80],"as":[81],"BenCaoZuJian.":[82],"We":[83],"re-analyzed":[84],"6164":[85],"expression":[87],"profiles":[88],"from":[89,137],"1037":[90],"experiments":[92],"TCM":[94,100,195],"generated":[97],"connections":[98],"between":[99],"2837":[103],"by":[106],"mapping":[107],"comprehensive":[109],"pharmacotranscriptomics":[110],"dataset":[111,119],"in":[112,184],"HERB":[113,188],"CMap,":[115],"largest":[117],"such":[118,150],"drugs.":[122,153],"Moreover,":[123],"manually":[125],"curated":[126],"1241":[127],"494":[131],"diseases":[133,169],"473":[135],"1966":[138],"references":[139],"published":[140],"recently,":[141],"cross-referenced":[143],"this":[144],"novel":[145],"information":[146],"databases":[148],"containing":[149],"Together":[154],"mining":[157],"statistical":[159],"inference,":[160],"linked":[162],"12":[163],"933":[164],"28":[167],"212":[168],"7263":[171],"herbs":[172],"49":[174],"258":[175],"ingredients":[176],"provided":[178],"six":[179],"pairwise":[180],"relationships":[181],"among":[182],"them":[183],"HERB.":[185],"In":[186],"summary,":[187],"will":[189],"intensively":[190],"support":[191],"modernization":[193],"guide":[197],"rational":[198],"discovery":[201],"efforts.":[202],"it":[204],"accessible":[206],"through":[207],"http://herb.ac.cn/.":[208]},"counts_by_year":[{"year":2026,"cited_by_count":38},{"year":2025,"cited_by_count":176},{"year":2024,"cited_by_count":137},{"year":2023,"cited_by_count":129},{"year":2022,"cited_by_count":97},{"year":2021,"cited_by_count":36},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-06T07:47:59.780226","created_date":"2025-10-10T00:00:00"}
