{"id":"https://openalex.org/W2120143417","doi":"https://doi.org/10.1093/nar/29.1.344","title":"ICB database: the gyrB database for identification and classification of bacteria","display_name":"ICB database: the gyrB database for identification and classification of bacteria","publication_year":2001,"publication_date":"2001-01-01","ids":{"openalex":"https://openalex.org/W2120143417","doi":"https://doi.org/10.1093/nar/29.1.344","mag":"2120143417","pmid":"https://pubmed.ncbi.nlm.nih.gov/11125132"},"language":"en","primary_location":{"id":"doi:10.1093/nar/29.1.344","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/29.1.344","pdf_url":"https://academic.oup.com/nar/article-pdf/29/1/344/9905812/290344.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/29/1/344/9905812/290344.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001805122","display_name":"Kazuya Watanabe","orcid":"https://orcid.org/0000-0002-1214-9393"},"institutions":[{"id":"https://openalex.org/I4210145261","display_name":"Iwate Prefectural Kamaishi Hospital","ror":"https://ror.org/05d503a40","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210145261"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"K. Watanabe","raw_affiliation_strings":["Marine Biotechnology Institute, Kamaishi Laboratories 3-75-1 Heita, Kamaishi, Iwate 026-0001, Japan"],"affiliations":[{"raw_affiliation_string":"Marine Biotechnology Institute, Kamaishi Laboratories 3-75-1 Heita, Kamaishi, Iwate 026-0001, Japan","institution_ids":["https://openalex.org/I4210145261"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5001805122"],"corresponding_institution_ids":["https://openalex.org/I4210145261"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":1.7439,"has_fulltext":true,"cited_by_count":96,"citation_normalized_percentile":{"value":0.84424642,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"29","issue":"1","first_page":"344","last_page":"345"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8700729608535767},{"id":"https://openalex.org/keywords/dna-gyrase","display_name":"DNA gyrase","score":0.6796209216117859},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5393054485321045},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5313433408737183},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.46228957176208496},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45464783906936646},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.4356079697608948},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4308532178401947},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.09288358688354492},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.08205270767211914}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8700729608535767},{"id":"https://openalex.org/C167125095","wikidata":"https://www.wikidata.org/wiki/Q70551687","display_name":"DNA gyrase","level":4,"score":0.6796209216117859},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5393054485321045},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5313433408737183},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.46228957176208496},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45464783906936646},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.4356079697608948},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4308532178401947},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.09288358688354492},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.08205270767211914},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004250","descriptor_name":"DNA Topoisomerases, Type II","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004250","descriptor_name":"DNA Topoisomerases, Type II","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004250","descriptor_name":"DNA Topoisomerases, Type II","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D027081","descriptor_name":"DNA Gyrase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D027081","descriptor_name":"DNA Gyrase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D027081","descriptor_name":"DNA Gyrase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/29.1.344","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/29.1.344","pdf_url":"https://academic.oup.com/nar/article-pdf/29/1/344/9905812/290344.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:11125132","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/11125132","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:280244","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC29849","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:29849","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/29849","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/29.1.344","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/29.1.344","pdf_url":"https://academic.oup.com/nar/article-pdf/29/1/344/9905812/290344.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120143417.pdf","grobid_xml":"https://content.openalex.org/works/W2120143417.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1524977071","https://openalex.org/W1683661461","https://openalex.org/W1971707621","https://openalex.org/W1977159876","https://openalex.org/W2015427377","https://openalex.org/W2104145483","https://openalex.org/W2109864391","https://openalex.org/W2110041134","https://openalex.org/W2120099995","https://openalex.org/W2149467013","https://openalex.org/W2158714788","https://openalex.org/W4232298325","https://openalex.org/W4247964656","https://openalex.org/W4256622779"],"related_works":["https://openalex.org/W2946088771","https://openalex.org/W1965132849","https://openalex.org/W2045710759","https://openalex.org/W1964030543","https://openalex.org/W754746347","https://openalex.org/W1501176150","https://openalex.org/W4231713137","https://openalex.org/W2092791062","https://openalex.org/W2094679748","https://openalex.org/W972739459"],"abstract_inverted_index":{"The":[0,23],"Identification":[1],"and":[2,42,46,66,73],"Classification":[3],"of":[4,70],"Bacteria":[5],"(ICB)":[6],"database":[7,24],"(http:/www.mbio.co.jp/icb)":[8],"contains":[9],"currently":[10,52],"available":[11,53],"information":[12],"about":[13],"the":[14,29],"DNA":[15],"gyrase":[16],"subunit":[17],"B":[18],"(gyrB)":[19],"gene":[20],"in":[21],"bacteria.":[22],"is":[25],"designed":[26],"to":[27],"provide":[28],"scientific":[30],"community":[31],"with":[32,59],"a":[33],"reference":[34],"point":[35],"for":[36,54],"using":[37],"gyrB":[38],"as":[39],"an":[40,67],"evolutionary":[41],"taxonomic":[43,64],"marker.":[44],"Nucleic":[45],"amino":[47],"acid":[48],"sequence":[49],"data":[50],"are":[51],"over":[55],"850":[56],"strains,":[57],"along":[58],"alignments":[60],"at":[61],"several":[62],"different":[63],"levels":[65],"exhaustive":[68],"review":[69],"primer":[71],"selection":[72],"background":[74],"information.":[75]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
