{"id":"https://openalex.org/W4241328656","doi":"https://doi.org/10.1093/nar/29.1.173","title":"The RDP-II (Ribosomal Database Project)","display_name":"The RDP-II (Ribosomal Database Project)","publication_year":2001,"publication_date":"2001-01-01","ids":{"openalex":"https://openalex.org/W4241328656","doi":"https://doi.org/10.1093/nar/29.1.173","pmid":"https://pubmed.ncbi.nlm.nih.gov/11125082"},"language":"en","primary_location":{"id":"doi:10.1093/nar/29.1.173","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/29.1.173","pdf_url":"https://academic.oup.com/nar/article-pdf/29/1/173/9905117/290173.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/29/1/173/9905117/290173.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027397204","display_name":"B. Maidak","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"B. L. Maidak","raw_affiliation_strings":["Center for Microbial Ecology, 540 Plant and Soil Sciences Building, Michigan State University, East Lansing, MI 48824-1325, USA"],"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, 540 Plant and Soil Sciences Building, Michigan State University, East Lansing, MI 48824-1325, USA","institution_ids":["https://openalex.org/I87216513"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5027397204"],"corresponding_institution_ids":["https://openalex.org/I87216513"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":42.9005,"has_fulltext":false,"cited_by_count":1184,"citation_normalized_percentile":{"value":0.99955295,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"29","issue":"1","first_page":"173","last_page":"174"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.804364800453186},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.7686290740966797},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6866744160652161},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.5590794086456299},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4181095361709595},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3889702260494232},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15556567907333374}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.804364800453186},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.7686290740966797},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6866744160652161},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.5590794086456299},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4181095361709595},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3889702260494232},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15556567907333374}],"mesh":[{"descriptor_ui":"D007255","descriptor_name":"Information Services","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007255","descriptor_name":"Information Services","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007255","descriptor_name":"Information Services","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012335","descriptor_name":"RNA, Ribosomal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012335","descriptor_name":"RNA, Ribosomal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012335","descriptor_name":"RNA, Ribosomal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/29.1.173","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/29.1.173","pdf_url":"https://academic.oup.com/nar/article-pdf/29/1/173/9905117/290173.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:11125082","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/11125082","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.102.4908","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.102.4908","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/25/1/109.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:280142","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC29785","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:29785","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/29785","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/29.1.173","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/29.1.173","pdf_url":"https://academic.oup.com/nar/article-pdf/29/1/173/9905117/290173.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4241328656.pdf","grobid_xml":"https://content.openalex.org/works/W4241328656.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1977159876","https://openalex.org/W2031498118","https://openalex.org/W2048192879","https://openalex.org/W2102555068","https://openalex.org/W2103490626","https://openalex.org/W2104145483","https://openalex.org/W2110041134","https://openalex.org/W4247964656"],"related_works":["https://openalex.org/W4312203868","https://openalex.org/W2069013776","https://openalex.org/W2059637021","https://openalex.org/W2038264393","https://openalex.org/W2378282666","https://openalex.org/W4210644918","https://openalex.org/W2243442814","https://openalex.org/W2068841895","https://openalex.org/W2482891981","https://openalex.org/W1615360470"],"abstract_inverted_index":{"The":[0,72,166],"Ribosomal":[1],"Database":[2],"Project":[3],"(RDP-II),":[4],"previously":[5],"described":[6],"by":[7],"Maidak":[8],"et":[9],"al.":[10],"[Nucleic":[11],"Acids":[12],"Res.":[13],"(2000),":[14],"28,":[15],"173-174],":[16],"continued":[17],"during":[18],"the":[19,28,34,54,83],"past":[20],"year":[21],"to":[22,27,32,157,179],"add":[23],"new":[24],"rRNA":[25,51,61,77,113,132,147],"sequences":[26,52,62,78,143],"aligned":[29,46,64,110],"data":[30],"and":[31,58,69,89,111,118,121,155,159,172],"improve":[33],"analysis":[35,122],"commands.":[36],"Release":[37],"8.0":[38],"(June":[39],"1,":[40],"2000)":[41],"consisted":[42],"of":[43,56,74,138,152],"16":[44],"277":[45],"prokaryotic":[47,75],"small":[48],"subunit":[49],"(SSU)":[50],"while":[53],"number":[55,73],"eukaryotic":[57],"mitochondrial":[59],"SSU":[60,76],"in":[63,101],"form":[65],"remained":[66],"at":[67],"2055":[68],"1503,":[70],"respectively.":[71],"more":[79],"than":[80,94],"doubled":[81],"from":[82,177],"previous":[84],"release":[85],"14":[86],"months":[87],"earlier,":[88],"approximately":[90],"75%":[91],"are":[92],"longer":[93],"899":[95],"bp.":[96],"An":[97],"RDP-II":[98,108,167],"mirror":[99],"site":[100],"Japan":[102],"is":[103],"now":[104],"available":[105],"(http://wdcm.nig.ac.jp/RDP/html/index.h":[106],"tml).":[107],"provides":[109],"annotated":[112],"sequences,":[114,140,148],"derived":[115],"phylogenetic":[116,136],"trees":[117],"taxonomic":[119],"hierarchies,":[120],"services":[123,130,156],"through":[124],"its":[125],"WWW":[126],"server":[127],"(http://rdp.cme.msu.edu/).":[128],"Analysis":[129],"include":[131],"probe":[133],"checking,":[134],"approximate":[135],"placement":[137],"user":[139,142],"screening":[141],"for":[144,170],"possible":[145],"chimeric":[146],"automated":[149],"alignment,":[150],"production":[151],"similarity":[153],"matrices":[154],"plan":[158],"analyze":[160],"terminal":[161],"restriction":[162],"fragment":[163],"polymorphism":[164],"experiments.":[165],"email":[168],"address":[169],"questions":[171],"comments":[173],"has":[174],"been":[175],"changed":[176],"curator@cme.msu.edu":[178],"rdpstaff@msu.edu.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":23},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":28},{"year":2015,"cited_by_count":35},{"year":2014,"cited_by_count":37},{"year":2013,"cited_by_count":51},{"year":2012,"cited_by_count":42}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
