{"id":"https://openalex.org/W4232298325","doi":"https://doi.org/10.1093/nar/29.1.17","title":"The EMBL nucleotide sequence database","display_name":"The EMBL nucleotide sequence database","publication_year":2001,"publication_date":"2001-01-01","ids":{"openalex":"https://openalex.org/W4232298325","doi":"https://doi.org/10.1093/nar/29.1.17","pmid":"https://pubmed.ncbi.nlm.nih.gov/11125039"},"language":"en","primary_location":{"id":"doi:10.1093/nar/29.1.17","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/29.1.17","pdf_url":"https://academic.oup.com/nar/article-pdf/29/1/17/9905115/290017.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/29/1/17/9905115/290017.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110897943","display_name":"G. Stoesser","orcid":null},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"G. Stoesser","raw_affiliation_strings":["EMBL Outstation-The European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. stoesser@ebi.ac.uk","EMBL Outstation-The European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"EMBL Outstation-The European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. stoesser@ebi.ac.uk","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"EMBL Outstation-The European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5110897943"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":7.9654,"has_fulltext":true,"cited_by_count":111,"citation_normalized_percentile":{"value":0.98350334,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"29","issue":"1","first_page":"17","last_page":"21"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.8814595341682434},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.6013505458831787},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5965322852134705},{"id":"https://openalex.org/keywords/file-transfer-protocol","display_name":"File Transfer Protocol","score":0.5053863525390625},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48401185870170593},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.433794766664505},{"id":"https://openalex.org/keywords/accession-number","display_name":"Accession number (library science)","score":0.42434024810791016},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3782215714454651},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3627443313598633},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3260953724384308},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2944130301475525},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.24625977873802185},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21996569633483887},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10595542192459106}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.8814595341682434},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.6013505458831787},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5965322852134705},{"id":"https://openalex.org/C169485995","wikidata":"https://www.wikidata.org/wiki/Q42283","display_name":"File Transfer Protocol","level":3,"score":0.5053863525390625},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48401185870170593},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.433794766664505},{"id":"https://openalex.org/C15190224","wikidata":"https://www.wikidata.org/wiki/Q1417099","display_name":"Accession number (library science)","level":4,"score":0.42434024810791016},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3782215714454651},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3627443313598633},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3260953724384308},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2944130301475525},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.24625977873802185},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21996569633483887},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10595542192459106}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005060","descriptor_name":"Europe","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005060","descriptor_name":"Europe","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005060","descriptor_name":"Europe","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/29.1.17","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/29.1.17","pdf_url":"https://academic.oup.com/nar/article-pdf/29/1/17/9905115/290017.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:11125039","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/11125039","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:29766","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/29766","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/29.1.17","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/29.1.17","pdf_url":"https://academic.oup.com/nar/article-pdf/29/1/17/9905115/290017.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.5799999833106995,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4232298325.pdf","grobid_xml":"https://content.openalex.org/works/W4232298325.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1532202009","https://openalex.org/W1730348256","https://openalex.org/W1977159876","https://openalex.org/W2003144438","https://openalex.org/W2022186477","https://openalex.org/W2032991899","https://openalex.org/W2054698853","https://openalex.org/W2055043387","https://openalex.org/W2101690350","https://openalex.org/W2106882534","https://openalex.org/W2125604001","https://openalex.org/W2142890842","https://openalex.org/W4213149192","https://openalex.org/W4236236547","https://openalex.org/W4242043490","https://openalex.org/W4243279010","https://openalex.org/W4247964656","https://openalex.org/W4248628830","https://openalex.org/W4250721369"],"related_works":["https://openalex.org/W1530540721","https://openalex.org/W2100945610","https://openalex.org/W2164453232","https://openalex.org/W4250292613","https://openalex.org/W4243994291","https://openalex.org/W2208487679","https://openalex.org/W4253968388","https://openalex.org/W4240179275","https://openalex.org/W4236549265","https://openalex.org/W4238317775"],"abstract_inverted_index":{"The":[0,43],"EMBL":[1,48,166],"Nucleotide":[2,167],"Sequence":[3,112,168],"Database":[4,87,169],"(http://www.ebi.ac.uk/embl/)":[5],"is":[6,33,58],"maintained":[7],"at":[8,28],"the":[9,19,29,36,47,59,82,98,127,161,165],"European":[10,83],"Bioinformatics":[11],"Institute":[12],"(EBI)":[13],"in":[14,121,164],"an":[15],"international":[16],"collaboration":[17],"with":[18],"DNA":[20],"Data":[21,32],"Bank":[22],"of":[23,72,143],"Japan":[24],"(DDBJ)":[25],"and":[26,53,80,106,125,130,170],"GenBank":[27],"NCBI":[30],"(USA).":[31],"exchanged":[34],"amongst":[35],"collaborating":[37],"databases":[38,132],"on":[39],"a":[40,116,141],"daily":[41],"basis.":[42],"major":[44],"contributors":[45],"to":[46,97,155],"database":[49],"are":[50,89,149],"individual":[51,65],"authors":[52],"genome":[54,77],"project":[55],"groups.":[56],"Webin":[57],"preferred":[60],"web-based":[61],"submission":[62],"system":[63],"for":[64,119],"submitters,":[66],"whilst":[67],"automatic":[68],"procedures":[69],"allow":[70,94,152],"incorporation":[71],"sequence":[73,138],"data":[74,101,163],"from":[75,81],"large-scale":[76],"sequencing":[78],"centres":[79],"Patent":[84],"Office":[85],"(EPO).":[86],"releases":[88],"produced":[90],"quarterly.":[91],"Network":[92],"services":[93],"free":[95],"access":[96],"most":[99],"up-to-date":[100],"collection":[102],"via":[103],"ftp,":[104],"email":[105],"World":[107],"Wide":[108],"Web":[109],"interfaces.":[110],"EBI's":[111],"Retrieval":[113],"System":[114],"(SRS),":[115],"network":[117],"browser":[118],"databanks":[120],"molecular":[122],"biology,":[123],"integrates":[124],"links":[126],"main":[128],"nucleotide":[129],"protein":[131],"plus":[133],"many":[134],"specialized":[135],"databases.":[136],"For":[137],"similarity":[139],"searching":[140],"variety":[142],"tools":[144],"(e.g.":[145],"Blitz,":[146],"Fasta,":[147],"BLAST)":[148],"available":[150],"which":[151],"external":[153],"users":[154],"compare":[156],"their":[157],"own":[158],"sequences":[159],"against":[160],"latest":[162],"SWISS-PROT.":[171]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
